Wall clock time and date at job start Mon Mar 30 2020 02:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 H 1.08995 * 109.47476 * 305.67408 * 3 2 1 5 5 C 1.50703 * 109.47011 * 185.67416 * 3 2 1 6 6 H 1.08004 * 119.99795 * 245.64347 * 5 3 2 7 7 C 1.37882 * 119.99901 * 65.64482 * 5 3 2 8 8 N 1.31513 * 119.99880 * 196.83467 * 7 5 3 9 9 Si 1.86794 * 120.00016 * 16.55519 * 7 5 3 10 10 H 1.48496 * 109.47103 * 180.27408 * 9 7 5 11 11 H 1.48501 * 109.47197 * 300.27752 * 9 7 5 12 12 H 1.48500 * 109.47105 * 60.27258 * 9 7 5 13 13 N 1.46901 * 109.46973 * 65.67874 * 3 2 1 14 14 C 1.46903 * 110.99901 * 274.99828 * 13 3 2 15 15 C 1.53781 * 113.61403 * 252.50324 * 14 13 3 16 16 C 1.53778 * 87.07853 * 220.01851 * 15 14 13 17 17 C 1.50702 * 113.69427 * 139.99619 * 16 15 14 18 18 C 1.38248 * 119.96817 * 322.18458 * 17 16 15 19 19 C 1.38200 * 120.02488 * 179.73224 * 18 17 16 20 20 C 1.38467 * 119.97020 * 0.56370 * 19 18 17 21 21 F 1.35099 * 120.02484 * 179.68854 * 20 19 18 22 22 C 1.38459 * 119.94612 * 359.70981 * 20 19 18 23 23 C 1.38191 * 119.97834 * 359.97438 * 22 20 19 24 24 C 1.53770 * 113.61787 * 155.00181 * 14 13 3 25 25 H 1.08997 * 109.47404 * 299.99869 * 1 2 3 26 26 H 1.09003 * 109.47165 * 60.00592 * 1 2 3 27 27 H 1.09002 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47348 * 239.99578 * 2 1 3 29 29 H 1.09003 * 109.46839 * 120.00116 * 2 1 3 30 30 H 0.97003 * 119.99707 * 354.36745 * 8 7 5 31 31 H 1.00906 * 111.00168 * 151.04897 * 13 3 2 32 32 H 1.09006 * 112.84771 * 23.80359 * 14 13 3 33 33 H 1.09005 * 113.61084 * 334.56342 * 15 14 13 34 34 H 1.08994 * 113.61919 * 105.46744 * 15 14 13 35 35 H 1.09005 * 113.61206 * 270.87867 * 16 15 14 36 36 H 1.08004 * 119.98962 * 359.97438 * 18 17 16 37 37 H 1.07999 * 120.01769 * 180.25590 * 19 18 17 38 38 H 1.08004 * 120.00741 * 179.97438 * 22 20 19 39 39 H 1.08001 * 119.98790 * 179.97438 * 23 22 20 40 40 H 1.08999 * 113.61551 * 254.53029 * 24 14 13 41 41 H 1.09003 * 113.61598 * 25.43216 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9848 -0.8348 5 6 3.5404 1.4448 -0.1405 6 1 4.1581 1.8031 0.6698 7 6 4.1247 0.9896 -1.3035 8 7 5.4021 0.6774 -1.3191 9 14 3.1000 0.8088 -2.8548 10 1 3.9553 0.2990 -3.9564 11 1 1.9906 -0.1467 -2.6067 12 1 2.5392 2.1304 -3.2344 13 7 1.6654 2.0943 1.2621 14 6 0.3043 2.6420 1.1880 15 6 0.2619 4.1768 1.1001 16 6 -0.9424 4.1196 2.0547 17 6 -0.9397 5.2063 3.0988 18 6 0.2511 5.6062 3.6763 19 6 0.2555 6.6065 4.6298 20 6 -0.9346 7.2002 5.0152 21 9 -0.9322 8.1738 5.9518 22 6 -2.1271 6.7949 4.4401 23 6 -2.1283 5.7989 3.4821 24 6 -0.3797 2.7800 2.5582 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.9517 0.8440 -0.5373 31 1 2.3306 2.8112 1.5102 32 1 -0.3125 2.1434 0.4402 33 1 1.1374 4.6631 1.5304 34 1 0.0143 4.5506 0.1067 35 1 -1.9006 4.0262 1.5436 36 1 1.1786 5.1394 3.3793 37 1 1.1863 6.9216 5.0779 38 1 -3.0560 7.2569 4.7402 39 1 -3.0585 5.4824 3.0337 40 1 -1.1453 2.0262 2.7419 41 1 0.3203 2.8845 3.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:54 Heat of formation + Delta-G solvation = -7.714004 kcal Electronic energy + Delta-G solvation = -21146.781163 eV Core-core repulsion = 17941.201106 eV Total energy + Delta-G solvation = -3205.580056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.02587 -40.13901 -38.12071 -35.49392 -32.26864 -31.33442 -31.11472 -29.85298 -26.88320 -25.44173 -24.04653 -23.22092 -22.28279 -21.09627 -19.84163 -19.08866 -17.86767 -17.46062 -16.47906 -15.91073 -15.72938 -15.42830 -14.70669 -14.58286 -13.77898 -13.69751 -13.51091 -13.30268 -13.15443 -12.72809 -12.57475 -12.31512 -12.22001 -12.15282 -11.92960 -11.55966 -11.21905 -10.96719 -10.69418 -10.51196 -10.37596 -10.28916 -9.95616 -9.79860 -9.36493 -9.26700 -8.84768 -8.59998 -8.25523 -7.45539 -6.47822 -4.09856 0.98895 1.07331 3.36486 3.39226 3.40842 3.57635 4.11188 4.45628 4.50283 4.59812 4.72344 4.84233 4.89545 5.09579 5.12522 5.15373 5.22313 5.27097 5.48342 5.70121 5.80505 5.88696 5.92102 5.96682 5.98866 6.00004 6.01777 6.12264 6.18512 6.22236 6.24879 6.45923 6.62362 6.67716 6.71147 6.74819 6.97383 7.06213 7.47921 7.75592 8.14766 8.37433 8.48389 8.93400 9.59298 10.91848 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029893 B = 0.003634 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.437834 B = 7702.655142 C = 8156.406209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.118 4.118 3 C 0.195 3.805 4 H -0.006 1.006 5 C -0.605 4.605 6 H 0.059 0.941 7 C 0.032 3.968 8 N -0.906 5.906 9 Si 1.044 2.956 10 H -0.286 1.286 11 H -0.271 1.271 12 H -0.286 1.286 13 N -0.667 5.667 14 C 0.060 3.940 15 C -0.162 4.162 16 C -0.079 4.079 17 C -0.068 4.068 18 C -0.086 4.086 19 C -0.150 4.150 20 C 0.084 3.916 21 F -0.145 7.145 22 C -0.154 4.154 23 C -0.092 4.092 24 C -0.118 4.118 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.268 0.732 31 H 0.338 0.662 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.064 0.936 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.607 9.608 8.601 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.156 4.156 3 C 0.086 3.914 4 H 0.012 0.988 5 C -0.643 4.643 6 H 0.077 0.923 7 C -0.174 4.174 8 N -0.540 5.540 9 Si 0.873 3.127 10 H -0.212 1.212 11 H -0.197 1.197 12 H -0.212 1.212 13 N -0.296 5.296 14 C -0.051 4.051 15 C -0.201 4.201 16 C -0.097 4.097 17 C -0.068 4.068 18 C -0.104 4.104 19 C -0.169 4.169 20 C 0.065 3.935 21 F -0.123 7.123 22 C -0.172 4.172 23 C -0.110 4.110 24 C -0.156 4.156 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.083 0.917 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.699 8.506 7.353 19.310 hybrid contribution 0.090 1.595 1.281 2.047 sum -15.609 10.101 8.634 20.499 Atomic orbital electron populations 1.22107 0.98996 0.99898 1.00625 1.21949 0.92428 0.99736 1.01504 1.19406 0.96011 0.90351 0.85676 0.98831 1.22110 0.90361 1.48719 1.03093 0.92276 1.25703 0.97662 0.92688 1.01303 1.70852 1.07393 1.41244 1.34502 0.84052 0.75568 0.77074 0.75996 1.21183 1.19741 1.21213 1.60448 1.00714 1.33212 1.35220 1.23305 0.93555 0.91586 0.96692 1.23877 0.97454 0.99765 0.99004 1.21469 0.99343 0.93781 0.95140 1.19907 0.92800 0.96904 0.97225 1.21001 0.98770 0.95637 0.94963 1.21165 0.97183 0.98510 1.00013 1.17725 0.94929 0.89887 0.90941 1.91481 1.97424 1.60478 1.62953 1.21100 0.97017 0.99934 0.99193 1.20928 0.98226 0.95349 0.96509 1.23198 0.99265 0.94366 0.98816 0.92077 0.94278 0.94477 0.92357 0.92413 0.92208 0.84351 0.88016 0.89771 0.91704 0.88642 0.84616 0.84839 0.85034 0.85168 0.91706 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.50 37.16 0.32 -2.47 16 2 C -0.12 -2.55 5.28 -26.73 -0.14 -2.69 16 3 C 0.19 4.43 1.77 -68.86 -0.12 4.31 16 4 H -0.01 -0.14 6.51 -51.93 -0.34 -0.47 16 5 C -0.60 -16.47 8.83 -34.44 -0.30 -16.78 16 6 H 0.06 1.74 7.92 -52.48 -0.42 1.32 16 7 C 0.03 0.90 5.31 -17.82 -0.09 0.81 16 8 N -0.91 -27.45 13.69 55.43 0.76 -26.69 16 9 Si 1.04 24.81 26.28 -169.99 -4.47 20.34 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -5.96 5.68 56.52 0.32 -5.64 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.67 -12.87 6.38 -100.10 -0.64 -13.51 16 14 C 0.06 0.92 2.55 -66.90 -0.17 0.75 16 15 C -0.16 -2.17 7.07 -25.92 -0.18 -2.35 16 16 C -0.08 -0.89 3.97 -90.96 -0.36 -1.25 16 17 C -0.07 -0.75 5.29 -104.62 -0.55 -1.30 16 18 C -0.09 -0.96 8.59 -39.59 -0.34 -1.30 16 19 C -0.15 -1.64 10.03 -39.51 -0.40 -2.03 16 20 C 0.08 0.95 7.30 -39.42 -0.29 0.66 16 21 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 22 C -0.15 -1.53 10.03 -39.52 -0.40 -1.93 16 23 C -0.09 -0.90 9.71 -39.60 -0.38 -1.29 16 24 C -0.12 -1.52 7.33 -25.93 -0.19 -1.71 16 25 H 0.06 1.00 5.58 -51.93 -0.29 0.71 16 26 H 0.04 0.65 7.93 -51.93 -0.41 0.24 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.34 4.77 -51.93 -0.25 1.09 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 31 H 0.34 6.60 7.72 -39.29 -0.30 6.29 16 32 H 0.10 1.60 5.12 -51.93 -0.27 1.34 16 33 H 0.08 1.13 6.02 -51.93 -0.31 0.82 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 36 H 0.14 1.49 6.68 -52.48 -0.35 1.14 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.13 1.00 8.05 -52.49 -0.42 0.58 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.14 7.71 -51.93 -0.40 0.74 16 LS Contribution 324.62 15.07 4.89 4.89 Total: -1.00 -29.07 324.62 -8.97 -38.05 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.95 Total: 7.19 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -3.61 Total: -28.59 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.12 Total: -40.20 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -4.47 Total: 20.34 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.07 -8.97 -38.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.331 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds