Wall clock time and date at job start Mon Mar 30 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 H 1.08995 * 109.47476 * 305.67408 * 3 2 1 5 5 C 1.50703 * 109.47011 * 185.67416 * 3 2 1 6 6 H 1.08004 * 119.99795 * 245.64347 * 5 3 2 7 7 C 1.37882 * 119.99901 * 65.64482 * 5 3 2 8 8 N 1.31513 * 119.99880 * 196.83467 * 7 5 3 9 9 Si 1.86794 * 120.00016 * 16.55519 * 7 5 3 10 10 H 1.48496 * 109.47103 * 180.27408 * 9 7 5 11 11 H 1.48501 * 109.47197 * 300.27752 * 9 7 5 12 12 H 1.48500 * 109.47105 * 60.27258 * 9 7 5 13 13 N 1.46901 * 109.46973 * 65.67874 * 3 2 1 14 14 C 1.46903 * 110.99901 * 274.99828 * 13 3 2 15 15 C 1.53781 * 113.61403 * 252.50324 * 14 13 3 16 16 C 1.53778 * 87.07853 * 220.01851 * 15 14 13 17 17 C 1.50702 * 113.69427 * 139.99619 * 16 15 14 18 18 C 1.38248 * 119.96817 * 322.18458 * 17 16 15 19 19 C 1.38200 * 120.02488 * 179.73224 * 18 17 16 20 20 C 1.38467 * 119.97020 * 0.56370 * 19 18 17 21 21 F 1.35099 * 120.02484 * 179.68854 * 20 19 18 22 22 C 1.38459 * 119.94612 * 359.70981 * 20 19 18 23 23 C 1.38191 * 119.97834 * 359.97438 * 22 20 19 24 24 C 1.53770 * 113.61787 * 155.00181 * 14 13 3 25 25 H 1.08997 * 109.47404 * 299.99869 * 1 2 3 26 26 H 1.09003 * 109.47165 * 60.00592 * 1 2 3 27 27 H 1.09002 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47348 * 239.99578 * 2 1 3 29 29 H 1.09003 * 109.46839 * 120.00116 * 2 1 3 30 30 H 0.97003 * 119.99707 * 354.36745 * 8 7 5 31 31 H 1.00906 * 111.00168 * 151.04897 * 13 3 2 32 32 H 1.09006 * 112.84771 * 23.80359 * 14 13 3 33 33 H 1.09005 * 113.61084 * 334.56342 * 15 14 13 34 34 H 1.08994 * 113.61919 * 105.46744 * 15 14 13 35 35 H 1.09005 * 113.61206 * 270.87867 * 16 15 14 36 36 H 1.08004 * 119.98962 * 359.97438 * 18 17 16 37 37 H 1.07999 * 120.01769 * 180.25590 * 19 18 17 38 38 H 1.08004 * 120.00741 * 179.97438 * 22 20 19 39 39 H 1.08001 * 119.98790 * 179.97438 * 23 22 20 40 40 H 1.08999 * 113.61551 * 254.53029 * 24 14 13 41 41 H 1.09003 * 113.61598 * 25.43216 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9848 -0.8348 5 6 3.5404 1.4448 -0.1405 6 1 4.1581 1.8031 0.6698 7 6 4.1247 0.9896 -1.3035 8 7 5.4021 0.6774 -1.3191 9 14 3.1000 0.8088 -2.8548 10 1 3.9553 0.2990 -3.9564 11 1 1.9906 -0.1467 -2.6067 12 1 2.5392 2.1304 -3.2344 13 7 1.6654 2.0943 1.2621 14 6 0.3043 2.6420 1.1880 15 6 0.2619 4.1768 1.1001 16 6 -0.9424 4.1196 2.0547 17 6 -0.9397 5.2063 3.0988 18 6 0.2511 5.6062 3.6763 19 6 0.2555 6.6065 4.6298 20 6 -0.9346 7.2002 5.0152 21 9 -0.9322 8.1738 5.9518 22 6 -2.1271 6.7949 4.4401 23 6 -2.1283 5.7989 3.4821 24 6 -0.3797 2.7800 2.5582 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 5.9517 0.8440 -0.5373 31 1 2.3306 2.8112 1.5102 32 1 -0.3125 2.1434 0.4402 33 1 1.1374 4.6631 1.5304 34 1 0.0143 4.5506 0.1067 35 1 -1.9006 4.0262 1.5436 36 1 1.1786 5.1394 3.3793 37 1 1.1863 6.9216 5.0779 38 1 -3.0560 7.2569 4.7402 39 1 -3.0585 5.4824 3.0337 40 1 -1.1453 2.0262 2.7419 41 1 0.3203 2.8845 3.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183466.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:53 Heat of formation + Delta-G solvation = -24.324978 kcal Electronic energy + Delta-G solvation = -21147.501469 eV Core-core repulsion = 17941.201106 eV Total energy + Delta-G solvation = -3206.300362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.89491 -41.11378 -39.18488 -37.05875 -34.29993 -32.43944 -32.08076 -31.05237 -28.58694 -26.49440 -25.19171 -24.12126 -23.90299 -22.14463 -21.48388 -20.38580 -19.40944 -18.68213 -17.39150 -17.02176 -16.80314 -16.59470 -15.91235 -15.71084 -15.28173 -14.90805 -14.51217 -14.45487 -14.37841 -14.21588 -14.03582 -13.75711 -13.62947 -13.27237 -13.06164 -12.71509 -12.59778 -12.26440 -12.11450 -11.97686 -11.78715 -11.61277 -11.38383 -11.28286 -11.00889 -10.77283 -10.37339 -10.05138 -9.45715 -9.00664 -8.70341 -6.35868 0.15353 0.29017 1.45279 1.51627 1.70752 2.48514 2.58965 3.06797 3.29862 3.50190 3.69189 3.74993 3.94008 3.97387 4.04161 4.17395 4.21537 4.35473 4.43530 4.50983 4.53788 4.64784 4.75129 4.88868 4.90978 4.94251 4.99242 5.07222 5.14385 5.17555 5.19754 5.26087 5.29394 5.31784 5.40357 5.53240 5.66065 5.72132 5.89724 5.94973 6.05350 6.38840 6.76897 6.85695 7.43104 8.64876 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029893 B = 0.003634 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.437834 B = 7702.655142 C = 8156.406209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.200 3.800 4 H -0.004 1.004 5 C -0.605 4.605 6 H 0.020 0.980 7 C -0.020 4.020 8 N -0.941 5.941 9 Si 1.082 2.918 10 H -0.292 1.292 11 H -0.239 1.239 12 H -0.266 1.266 13 N -0.673 5.673 14 C 0.048 3.952 15 C -0.163 4.163 16 C -0.058 4.058 17 C -0.077 4.077 18 C -0.097 4.097 19 C -0.159 4.159 20 C 0.068 3.932 21 F -0.151 7.151 22 C -0.152 4.152 23 C -0.086 4.086 24 C -0.111 4.111 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.251 0.749 31 H 0.331 0.669 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.078 0.922 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.499 9.956 8.195 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.090 3.910 4 H 0.014 0.986 5 C -0.643 4.643 6 H 0.038 0.962 7 C -0.219 4.219 8 N -0.577 5.577 9 Si 0.903 3.097 10 H -0.218 1.218 11 H -0.164 1.164 12 H -0.191 1.191 13 N -0.302 5.302 14 C -0.062 4.062 15 C -0.202 4.202 16 C -0.077 4.077 17 C -0.078 4.078 18 C -0.115 4.115 19 C -0.178 4.178 20 C 0.049 3.951 21 F -0.130 7.130 22 C -0.171 4.171 23 C -0.104 4.104 24 C -0.149 4.149 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.177 0.823 40 H 0.097 0.903 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.618 8.866 6.984 22.633 hybrid contribution 1.357 1.548 1.529 2.564 sum -18.261 10.414 8.513 22.680 Atomic orbital electron populations 1.22014 0.95166 1.01656 1.01913 1.21835 0.95852 0.98042 0.99875 1.19236 0.92693 0.91766 0.87322 0.98618 1.22406 0.93094 1.47196 1.01650 0.96160 1.27144 0.97808 0.92173 1.04730 1.70986 1.08659 1.44197 1.33900 0.83617 0.75164 0.78780 0.72122 1.21825 1.16354 1.19113 1.60430 1.02685 1.33757 1.33325 1.23498 0.91240 0.92815 0.98681 1.23827 0.98536 0.97999 0.99822 1.21371 0.99299 0.92692 0.94311 1.19956 0.93195 0.97205 0.97404 1.21039 0.99022 0.96001 0.95427 1.21284 0.97722 0.98634 1.00180 1.17973 0.95662 0.90127 0.91295 1.91463 1.97488 1.60794 1.63281 1.21390 0.97336 0.99676 0.98650 1.21222 0.98773 0.94520 0.95893 1.23107 0.99096 0.95855 0.96860 0.90832 0.92939 0.92563 0.93844 0.94301 0.94000 0.85124 0.87541 0.90546 0.91515 0.86187 0.85247 0.84257 0.82831 0.82302 0.90302 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 8.50 71.98 0.61 -4.12 16 2 C -0.12 -4.93 5.28 30.59 0.16 -4.77 16 3 C 0.20 8.97 1.77 44.17 0.08 9.05 16 4 H 0.00 -0.16 6.51 -2.39 -0.02 -0.18 16 5 C -0.61 -33.98 8.83 25.60 0.23 -33.75 16 6 H 0.02 1.25 7.92 -2.91 -0.02 1.23 16 7 C -0.02 -1.18 5.31 84.66 0.45 -0.73 16 8 N -0.94 -59.24 13.69 21.45 0.29 -58.94 16 9 Si 1.08 49.37 26.28 68.60 1.80 51.17 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.24 -9.66 5.68 99.48 0.57 -9.10 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 13 N -0.67 -25.76 6.38 -470.62 -3.00 -28.76 16 14 C 0.05 1.37 2.55 45.44 0.12 1.49 16 15 C -0.16 -4.05 7.07 31.12 0.22 -3.83 16 16 C -0.06 -1.13 3.97 -11.02 -0.04 -1.17 16 17 C -0.08 -1.50 5.29 -19.86 -0.11 -1.61 16 18 C -0.10 -2.08 8.59 22.26 0.19 -1.89 16 19 C -0.16 -3.37 10.03 22.32 0.22 -3.15 16 20 C 0.07 1.44 7.30 22.38 0.16 1.60 16 21 F -0.15 -3.42 17.27 44.97 0.78 -2.65 16 22 C -0.15 -2.59 10.03 22.31 0.22 -2.37 16 23 C -0.09 -1.38 9.71 22.26 0.22 -1.16 16 24 C -0.11 -2.56 7.33 31.11 0.23 -2.34 16 25 H 0.07 2.13 5.58 -2.39 -0.01 2.11 16 26 H 0.05 1.52 7.93 -2.39 -0.02 1.50 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.92 4.77 -2.39 -0.01 1.91 16 29 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 31 H 0.33 13.26 7.72 -89.69 -0.69 12.57 16 32 H 0.11 2.98 5.12 -2.38 -0.01 2.96 16 33 H 0.08 2.02 6.02 -2.38 -0.01 2.01 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.12 1.81 8.09 -2.38 -0.02 1.79 16 36 H 0.13 2.87 6.68 -2.91 -0.02 2.85 16 37 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.16 1.62 8.05 -2.91 -0.02 1.59 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.89 7.71 -2.39 -0.02 1.87 16 Total: -1.00 -64.96 324.62 2.99 -61.97 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.16 Total: 25.95 kcal Atomic # 6 Polarization: -51.70 SS G_CDS: 2.96 Total: -48.74 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -2.71 Total: -87.70 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.65 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.80 Total: 51.17 kcal Total: -64.96 2.99 -61.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183466.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.644 kcal (2) G-P(sol) polarization free energy of solvation -64.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds