Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47341 * 2 1 4 4 H 1.09005 * 109.46531 * 54.41426 * 3 2 1 5 5 C 1.50699 * 109.46877 * 174.41023 * 3 2 1 6 6 H 1.08002 * 119.99513 * 120.00732 * 5 3 2 7 7 C 1.37876 * 120.00256 * 300.00289 * 5 3 2 8 8 N 1.31506 * 119.99901 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99865 * 180.02562 * 7 5 3 10 10 H 1.48510 * 109.47306 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47323 * 120.00137 * 9 7 5 12 12 H 1.48502 * 109.46828 * 240.00154 * 9 7 5 13 13 N 1.46895 * 109.47510 * 294.41414 * 3 2 1 14 14 C 1.46896 * 111.00155 * 159.17393 * 13 3 2 15 15 H 1.09000 * 109.47158 * 38.75685 * 14 13 3 16 16 C 1.50700 * 109.47175 * 158.75750 * 14 13 3 17 17 C 1.38244 * 119.97617 * 220.00475 * 16 14 13 18 18 C 1.38194 * 120.03075 * 179.97438 * 17 16 14 19 19 C 1.38465 * 119.97120 * 0.02562 * 18 17 16 20 20 F 1.35101 * 120.02242 * 179.97438 * 19 18 17 21 21 C 1.38456 * 119.95003 * 359.97438 * 19 18 17 22 22 C 1.38202 * 119.97384 * 359.97438 * 21 19 18 23 23 C 1.53006 * 109.47439 * 278.75540 * 14 13 3 24 24 C 1.52999 * 117.49908 * 242.64097 * 23 14 13 25 25 C 1.53000 * 117.49855 * 174.01615 * 23 14 13 26 26 H 1.08995 * 109.47538 * 185.27478 * 1 2 3 27 27 H 1.09002 * 109.46908 * 305.27428 * 1 2 3 28 28 H 1.09000 * 109.47348 * 65.26930 * 1 2 3 29 29 H 1.09005 * 109.46507 * 240.00360 * 2 1 3 30 30 H 1.08998 * 109.46805 * 120.00711 * 2 1 3 31 31 H 0.97007 * 119.99769 * 180.02562 * 8 7 5 32 32 H 1.00907 * 110.99862 * 35.21948 * 13 3 2 33 33 H 1.08002 * 119.98755 * 359.69618 * 17 16 14 34 34 H 1.08003 * 120.01518 * 179.97438 * 18 17 16 35 35 H 1.07995 * 120.01307 * 179.97438 * 21 19 18 36 36 H 1.07996 * 119.98719 * 180.02562 * 22 21 19 37 37 H 1.08999 * 115.54831 * 28.35006 * 23 14 13 38 38 H 1.08997 * 117.50149 * 0.02562 * 24 23 14 39 39 H 1.09000 * 117.49860 * 145.02022 * 24 23 14 40 40 H 1.09003 * 117.49672 * 214.97906 * 25 23 14 41 41 H 1.09001 * 117.49856 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9843 0.8358 5 6 3.5407 1.4446 0.1384 6 1 4.1535 1.8866 -0.6334 7 6 4.1313 0.8824 1.2502 8 7 3.3851 0.3438 2.1897 9 14 5.9914 0.8857 1.4220 10 1 6.5967 1.5467 0.2378 11 1 6.3736 1.6253 2.6517 12 1 6.4826 -0.5128 1.5126 13 7 1.6637 2.0950 -1.2611 14 6 1.6796 3.5573 -1.1224 15 1 2.5246 3.8542 -0.5012 16 6 1.8104 4.1897 -2.4840 17 6 2.6195 5.2973 -2.6564 18 6 2.7407 5.8777 -3.9046 19 6 2.0508 5.3498 -4.9829 20 9 2.1682 5.9167 -6.2036 21 6 1.2408 4.2405 -4.8092 22 6 1.1220 3.6611 -3.5601 23 6 0.3771 4.0218 -0.4674 24 6 -0.5375 4.9365 -1.2846 25 6 0.2572 5.5038 -0.1065 26 1 -0.3634 -1.0232 0.0945 27 1 -0.3633 0.5935 0.8390 28 1 -0.3634 0.4299 -0.9334 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8007 -0.0514 2.9721 32 1 0.7627 1.7719 -1.5806 33 1 3.1536 5.7119 -1.8142 34 1 3.3725 6.7433 -4.0389 35 1 0.7019 3.8281 -5.6494 36 1 0.4905 2.7955 -3.4244 37 1 -0.0966 3.3015 0.1995 38 1 -0.2116 5.2071 -2.2888 39 1 -1.6133 4.8180 -1.1554 40 1 -0.2959 5.7584 0.7976 41 1 1.1063 6.1478 -0.3353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = -13.801112 kcal Electronic energy + Delta-G solvation = -21849.890126 eV Core-core repulsion = 18644.046113 eV Total energy + Delta-G solvation = -3205.844013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.81745 -40.88716 -38.42277 -37.10044 -34.29657 -33.07366 -32.02715 -30.94238 -28.52133 -26.29452 -24.53062 -23.91645 -23.21004 -22.92929 -21.38758 -20.74983 -18.57922 -18.23588 -17.27880 -17.22772 -16.67934 -16.53797 -16.34555 -15.81108 -15.33362 -15.20495 -14.67845 -14.39275 -14.27262 -14.15915 -13.71226 -13.38013 -13.25549 -13.12964 -12.85253 -12.67305 -12.50172 -12.27397 -12.24751 -11.98894 -11.83276 -11.53440 -11.47137 -11.34212 -10.88455 -10.80317 -10.40564 -9.95598 -9.40192 -8.94053 -8.04511 -6.15123 0.26005 0.37887 1.39547 1.42936 1.53511 2.45023 2.70117 2.91198 3.21315 3.36477 3.65787 3.84720 3.90269 3.97780 4.05109 4.14560 4.24262 4.44369 4.49041 4.54106 4.61390 4.72992 4.78557 4.79964 4.88697 5.02909 5.06828 5.08958 5.16101 5.22970 5.26857 5.29910 5.33549 5.41940 5.42462 5.62794 5.72819 5.80868 5.94679 6.02053 6.40851 6.53892 6.99287 7.05290 7.53776 8.98617 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.005500 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.161857 B = 5089.392399 C = 5735.674622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.230 3.770 4 H -0.025 1.025 5 C -0.506 4.506 6 H 0.047 0.953 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.674 5.674 14 C 0.165 3.835 15 H 0.063 0.937 16 C -0.065 4.065 17 C -0.099 4.099 18 C -0.150 4.150 19 C 0.072 3.928 20 F -0.149 7.149 21 C -0.152 4.152 22 C -0.073 4.073 23 C -0.189 4.189 24 C -0.161 4.161 25 C -0.173 4.173 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.059 0.941 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.259 0.741 32 H 0.330 0.670 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.319 9.431 -9.639 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.121 3.879 4 H -0.007 1.007 5 C -0.545 4.545 6 H 0.065 0.935 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.304 5.304 14 C 0.055 3.945 15 H 0.081 0.919 16 C -0.066 4.066 17 C -0.117 4.117 18 C -0.169 4.169 19 C 0.053 3.947 20 F -0.128 7.128 21 C -0.171 4.171 22 C -0.091 4.091 23 C -0.209 4.209 24 C -0.197 4.197 25 C -0.211 4.211 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.650 9.303 -9.779 15.047 hybrid contribution 0.432 -0.081 0.941 1.038 sum -6.218 9.222 -8.838 14.207 Atomic orbital electron populations 1.21740 0.96276 1.00982 1.00530 1.21575 0.94210 0.99113 1.01046 1.18867 0.93652 0.90459 0.84877 1.00716 1.21475 0.92998 1.36200 1.03836 0.93503 1.25584 1.01685 0.95530 0.95754 1.69997 1.35898 1.40077 1.09880 0.85661 0.81569 0.77595 0.77716 1.19715 1.20807 1.20823 1.60705 1.33845 1.03378 1.32486 1.19809 0.94971 0.88304 0.91440 0.91883 1.19897 0.96255 0.94994 0.95407 1.21021 0.97991 0.95527 0.97196 1.21214 1.01609 1.02375 0.91703 1.17839 1.00991 0.95572 0.80312 1.91458 1.95060 1.84390 1.41890 1.21286 1.00630 0.95969 0.99175 1.20870 0.98493 0.98816 0.90928 1.23029 0.99272 0.94325 1.04284 1.23110 0.97679 1.02495 0.96464 1.22942 1.03238 0.95066 0.99861 0.92730 0.94479 0.92211 0.94664 0.91581 0.93202 0.85091 0.84760 0.83272 0.83115 0.84570 0.89368 0.88178 0.88000 0.88369 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.63 71.98 0.69 -4.26 16 2 C -0.12 -5.53 5.39 30.59 0.16 -5.36 16 3 C 0.23 11.00 1.85 44.17 0.08 11.08 16 4 H -0.02 -1.31 7.23 -2.38 -0.02 -1.33 16 5 C -0.51 -27.56 8.25 25.60 0.21 -27.35 16 6 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 7 C 0.01 0.69 5.29 84.66 0.45 1.14 16 8 N -0.92 -52.08 11.29 21.45 0.24 -51.83 16 9 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.67 -26.45 5.55 -477.17 -2.65 -29.10 16 14 C 0.17 5.77 2.38 44.17 0.11 5.87 16 15 H 0.06 2.62 7.37 -2.39 -0.02 2.60 16 16 C -0.06 -1.91 3.27 -19.86 -0.06 -1.98 16 17 C -0.10 -2.67 9.66 22.26 0.21 -2.45 16 18 C -0.15 -3.66 10.03 22.31 0.22 -3.43 16 19 C 0.07 1.81 7.30 22.38 0.16 1.97 16 20 F -0.15 -3.80 17.27 44.97 0.78 -3.02 16 21 C -0.15 -3.63 10.03 22.31 0.22 -3.41 16 22 C -0.07 -1.92 7.94 22.26 0.18 -1.74 16 23 C -0.19 -5.75 5.40 -10.79 -0.06 -5.81 16 24 C -0.16 -3.85 9.45 30.60 0.29 -3.56 16 25 C -0.17 -4.45 10.13 30.60 0.31 -4.14 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.84 6.64 -2.39 -0.02 1.83 16 29 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.07 3.48 5.94 -2.39 -0.01 3.47 16 31 H 0.26 14.05 8.31 -92.70 -0.77 13.28 16 32 H 0.33 11.48 5.59 -89.69 -0.50 10.98 16 33 H 0.13 3.40 8.04 -2.91 -0.02 3.38 16 34 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.14 3.39 7.12 -2.91 -0.02 3.37 16 37 H 0.09 2.99 7.66 -2.39 -0.02 2.97 16 38 H 0.10 2.39 5.66 -2.39 -0.01 2.38 16 39 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.10 2.37 8.13 -2.39 -0.02 2.35 16 Total: -1.00 -58.84 333.29 4.10 -54.74 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.52 Total: 26.64 kcal Atomic # 6 Polarization: -46.61 SS G_CDS: 3.18 Total: -43.43 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.41 Total: -80.93 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.78 Total: -3.02 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -58.84 4.10 -54.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.937 kcal (2) G-P(sol) polarization free energy of solvation -58.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds