Wall clock time and date at job start Mon Mar 30 2020 02:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47265 * 2 1 4 4 H 1.08994 * 109.47705 * 305.64919 * 3 2 1 5 5 C 1.50705 * 109.47109 * 185.64189 * 3 2 1 6 6 H 1.07998 * 120.00439 * 244.05129 * 5 3 2 7 7 C 1.37879 * 119.99530 * 64.05214 * 5 3 2 8 8 N 1.31509 * 120.00084 * 196.84713 * 7 5 3 9 9 Si 1.86797 * 120.00093 * 16.84682 * 7 5 3 10 10 H 1.48507 * 109.47203 * 85.98065 * 9 7 5 11 11 H 1.48499 * 109.47393 * 205.97823 * 9 7 5 12 12 H 1.48501 * 109.47309 * 325.98221 * 9 7 5 13 13 N 1.46907 * 109.46911 * 65.65116 * 3 2 1 14 14 C 1.46903 * 110.99357 * 253.28843 * 13 3 2 15 15 H 1.08998 * 109.47264 * 34.08728 * 14 13 3 16 16 C 1.50708 * 109.46943 * 154.08716 * 14 13 3 17 17 C 1.38244 * 119.97190 * 39.72206 * 16 14 13 18 18 C 1.38195 * 120.02581 * 179.72369 * 17 16 14 19 19 C 1.38460 * 119.97005 * 0.57485 * 18 17 16 20 20 F 1.35103 * 120.02628 * 179.67844 * 19 18 17 21 21 C 1.38455 * 119.95049 * 359.70065 * 19 18 17 22 22 C 1.38194 * 119.97510 * 0.02562 * 21 19 18 23 23 C 1.53002 * 109.47030 * 274.08313 * 14 13 3 24 24 C 1.52993 * 117.49992 * 248.75073 * 23 14 13 25 25 C 1.53000 * 117.49570 * 180.09132 * 23 14 13 26 26 H 1.09004 * 109.47039 * 298.91617 * 1 2 3 27 27 H 1.09003 * 109.46945 * 58.90798 * 1 2 3 28 28 H 1.08998 * 109.47488 * 178.91320 * 1 2 3 29 29 H 1.09004 * 109.46334 * 240.00260 * 2 1 3 30 30 H 1.09000 * 109.46767 * 120.00756 * 2 1 3 31 31 H 0.96999 * 120.00559 * 179.97438 * 8 7 5 32 32 H 1.00894 * 111.00071 * 129.33420 * 13 3 2 33 33 H 1.08004 * 119.98681 * 359.97438 * 17 16 14 34 34 H 1.08000 * 120.01838 * 180.25321 * 18 17 16 35 35 H 1.08003 * 120.01346 * 179.97438 * 21 19 18 36 36 H 1.08005 * 119.99106 * 179.97438 * 22 21 19 37 37 H 1.08996 * 115.54604 * 34.42681 * 23 14 13 38 38 H 1.09000 * 117.50009 * 359.97438 * 24 23 14 39 39 H 1.09003 * 117.49972 * 145.02396 * 24 23 14 40 40 H 1.09005 * 117.49661 * 214.98014 * 25 23 14 41 41 H 1.08998 * 117.49971 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9847 -0.8350 5 6 3.5406 1.4447 -0.1397 6 1 4.1569 1.8269 0.6606 7 6 4.1266 0.9587 -1.2892 8 7 5.4047 0.6492 -1.2955 9 14 3.1051 0.7398 -2.8377 10 1 3.0689 2.0187 -3.5918 11 1 3.7116 -0.3176 -3.6857 12 1 1.7225 0.3446 -2.4669 13 7 1.6649 2.0944 1.2619 14 6 0.5772 3.0594 1.0526 15 1 -0.0879 2.6933 0.2705 16 6 -0.1985 3.2276 2.3337 17 6 0.4680 3.2697 3.5442 18 6 -0.2417 3.4296 4.7191 19 6 -1.6218 3.5358 4.6846 20 9 -2.3173 3.6856 5.8331 21 6 -2.2887 3.4878 3.4722 22 6 -1.5764 3.3335 2.2980 23 6 1.1656 4.4077 0.6320 24 6 1.0581 5.5663 1.6254 25 6 0.1871 5.5536 0.3667 26 1 -0.3633 0.4969 0.8996 27 1 -0.3633 0.5307 -0.8801 28 1 -0.3634 -1.0274 -0.0195 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8899 31 1 5.8170 0.3069 -2.1041 32 1 2.4633 2.5370 1.6915 33 1 1.5441 3.1816 3.5713 34 1 0.2794 3.4665 5.6644 35 1 -3.3652 3.5701 3.4441 36 1 -2.0963 3.2957 1.3521 37 1 2.0612 4.3571 0.0128 38 1 0.5678 5.3681 2.5785 39 1 1.8828 6.2782 1.6595 40 1 0.4392 6.2572 -0.4268 41 1 -0.8758 5.3468 0.4914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:56 Heat of formation + Delta-G solvation = 2.956757 kcal Electronic energy + Delta-G solvation = -21952.439403 eV Core-core repulsion = 18747.322066 eV Total energy + Delta-G solvation = -3205.117338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.82743 -39.83758 -37.23053 -35.68574 -32.54875 -31.64527 -31.08080 -29.96033 -27.31919 -24.73113 -23.15544 -22.43217 -22.11902 -21.89705 -19.80630 -19.49779 -17.64249 -17.09021 -16.19264 -15.78632 -15.48114 -15.36267 -15.19437 -14.22068 -13.94100 -13.86306 -13.45677 -13.35411 -12.83550 -12.67611 -12.63111 -12.16953 -12.08169 -11.84288 -11.47702 -11.28637 -11.15654 -10.87136 -10.84835 -10.80308 -10.40160 -10.13473 -9.85966 -9.71171 -9.41402 -9.20071 -8.98922 -8.47933 -8.36846 -7.54092 -6.18706 -4.13627 1.25706 1.33647 3.23928 3.33716 3.36584 3.69346 3.98505 4.33812 4.36182 4.76348 4.89111 4.91899 4.96817 5.08994 5.15640 5.23021 5.36707 5.40668 5.53902 5.79250 5.81428 5.92350 6.02698 6.04644 6.09411 6.10464 6.13059 6.19706 6.27540 6.28956 6.37371 6.54093 6.65631 6.71792 6.76937 6.99038 7.02819 7.07289 7.42213 7.59756 7.92636 8.27870 8.53203 8.90049 9.47894 10.94039 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023378 B = 0.005082 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.405120 B = 5508.212883 C = 5798.238166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.193 3.807 4 H 0.009 0.991 5 C -0.537 4.537 6 H 0.075 0.925 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.860 3.140 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.250 1.250 13 N -0.668 5.668 14 C 0.153 3.847 15 H 0.085 0.915 16 C -0.058 4.058 17 C -0.064 4.064 18 C -0.157 4.157 19 C 0.082 3.918 20 F -0.148 7.148 21 C -0.155 4.155 22 C -0.094 4.094 23 C -0.172 4.172 24 C -0.182 4.182 25 C -0.182 4.182 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.264 0.736 32 H 0.343 0.657 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.159 7.205 6.688 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C 0.084 3.916 4 H 0.026 0.974 5 C -0.575 4.575 6 H 0.093 0.907 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.687 3.313 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.298 5.298 14 C 0.042 3.958 15 H 0.103 0.897 16 C -0.059 4.059 17 C -0.082 4.082 18 C -0.175 4.175 19 C 0.063 3.937 20 F -0.126 7.126 21 C -0.174 4.174 22 C -0.112 4.112 23 C -0.192 4.192 24 C -0.219 4.219 25 C -0.219 4.219 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.162 0.838 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.423 6.592 6.814 16.433 hybrid contribution -0.004 0.587 -1.218 1.352 sum -13.427 7.179 5.595 16.221 Atomic orbital electron populations 1.21832 0.98644 0.99513 1.00533 1.21871 0.92698 0.99333 1.00877 1.19459 0.95324 0.90739 0.86030 0.97353 1.21256 0.89470 1.43194 1.03568 0.90696 1.24879 0.94694 0.93893 0.98815 1.69990 1.11938 1.42113 1.28376 0.87267 0.82249 0.78014 0.83763 1.20646 1.21471 1.17423 1.60716 1.11567 1.30223 1.27288 1.20166 0.93963 0.89280 0.92394 0.89696 1.20002 0.93171 0.97036 0.95695 1.20886 1.00782 0.95940 0.90597 1.21139 0.92142 1.04254 1.00006 1.17692 0.90074 1.04290 0.81630 1.91464 1.79440 1.93420 1.48318 1.21004 1.00445 1.04647 0.91337 1.20870 0.93544 0.99239 0.97563 1.23313 1.01780 0.90740 1.03346 1.23109 1.02586 1.01542 0.94629 1.22873 0.97060 1.02172 0.99842 0.92571 0.94566 0.94733 0.93088 0.92351 0.92612 0.83796 0.84656 0.85137 0.85320 0.85493 0.86613 0.88392 0.89363 0.89317 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.02 37.16 0.34 -2.31 16 2 C -0.11 -2.32 4.92 -26.73 -0.13 -2.45 16 3 C 0.19 4.19 1.56 -68.86 -0.11 4.09 16 4 H 0.01 0.20 6.15 -51.93 -0.32 -0.12 16 5 C -0.54 -14.01 9.02 -34.44 -0.31 -14.32 16 6 H 0.08 2.12 7.63 -52.49 -0.40 1.71 16 7 C 0.08 2.21 5.30 -17.82 -0.09 2.12 16 8 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 9 Si 0.86 20.42 25.84 -169.99 -4.39 16.03 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.25 -5.60 5.54 56.52 0.31 -5.29 16 13 N -0.67 -12.22 5.19 -102.16 -0.53 -12.75 16 14 C 0.15 2.35 1.71 -68.86 -0.12 2.23 16 15 H 0.09 1.36 6.67 -51.93 -0.35 1.02 16 16 C -0.06 -0.79 3.40 -104.61 -0.36 -1.15 16 17 C -0.06 -0.84 7.57 -39.59 -0.30 -1.14 16 18 C -0.16 -1.94 10.03 -39.52 -0.40 -2.34 16 19 C 0.08 1.05 7.30 -39.42 -0.29 0.76 16 20 F -0.15 -1.94 17.27 2.25 0.04 -1.90 16 21 C -0.16 -1.84 10.03 -39.52 -0.40 -2.23 16 22 C -0.09 -1.14 9.20 -39.60 -0.36 -1.51 16 23 C -0.17 -2.54 5.64 -90.62 -0.51 -3.05 16 24 C -0.18 -2.34 9.50 -26.70 -0.25 -2.59 16 25 C -0.18 -2.29 10.02 -26.69 -0.27 -2.56 16 26 H 0.06 0.96 7.16 -51.93 -0.37 0.59 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.15 4.92 -51.93 -0.26 0.89 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.34 6.41 6.97 -39.30 -0.27 6.14 16 33 H 0.14 1.78 7.26 -52.48 -0.38 1.40 16 34 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.13 1.35 8.04 -52.48 -0.42 0.93 16 37 H 0.12 1.99 8.14 -51.93 -0.42 1.56 16 38 H 0.10 1.25 5.42 -51.93 -0.28 0.96 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.06 7.67 -51.93 -0.40 0.66 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -27.63 327.40 -8.79 -36.42 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.06 Total: 8.98 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -3.56 Total: -26.44 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.24 Total: -38.03 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.39 Total: 16.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.63 -8.79 -36.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.382 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds