Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47265 * 2 1 4 4 H 1.08994 * 109.47705 * 305.64919 * 3 2 1 5 5 C 1.50705 * 109.47109 * 185.64189 * 3 2 1 6 6 H 1.07998 * 120.00439 * 244.05129 * 5 3 2 7 7 C 1.37879 * 119.99530 * 64.05214 * 5 3 2 8 8 N 1.31509 * 120.00084 * 196.84713 * 7 5 3 9 9 Si 1.86797 * 120.00093 * 16.84682 * 7 5 3 10 10 H 1.48507 * 109.47203 * 85.98065 * 9 7 5 11 11 H 1.48499 * 109.47393 * 205.97823 * 9 7 5 12 12 H 1.48501 * 109.47309 * 325.98221 * 9 7 5 13 13 N 1.46907 * 109.46911 * 65.65116 * 3 2 1 14 14 C 1.46903 * 110.99357 * 253.28843 * 13 3 2 15 15 H 1.08998 * 109.47264 * 34.08728 * 14 13 3 16 16 C 1.50708 * 109.46943 * 154.08716 * 14 13 3 17 17 C 1.38244 * 119.97190 * 39.72206 * 16 14 13 18 18 C 1.38195 * 120.02581 * 179.72369 * 17 16 14 19 19 C 1.38460 * 119.97005 * 0.57485 * 18 17 16 20 20 F 1.35103 * 120.02628 * 179.67844 * 19 18 17 21 21 C 1.38455 * 119.95049 * 359.70065 * 19 18 17 22 22 C 1.38194 * 119.97510 * 0.02562 * 21 19 18 23 23 C 1.53002 * 109.47030 * 274.08313 * 14 13 3 24 24 C 1.52993 * 117.49992 * 248.75073 * 23 14 13 25 25 C 1.53000 * 117.49570 * 180.09132 * 23 14 13 26 26 H 1.09004 * 109.47039 * 298.91617 * 1 2 3 27 27 H 1.09003 * 109.46945 * 58.90798 * 1 2 3 28 28 H 1.08998 * 109.47488 * 178.91320 * 1 2 3 29 29 H 1.09004 * 109.46334 * 240.00260 * 2 1 3 30 30 H 1.09000 * 109.46767 * 120.00756 * 2 1 3 31 31 H 0.96999 * 120.00559 * 179.97438 * 8 7 5 32 32 H 1.00894 * 111.00071 * 129.33420 * 13 3 2 33 33 H 1.08004 * 119.98681 * 359.97438 * 17 16 14 34 34 H 1.08000 * 120.01838 * 180.25321 * 18 17 16 35 35 H 1.08003 * 120.01346 * 179.97438 * 21 19 18 36 36 H 1.08005 * 119.99106 * 179.97438 * 22 21 19 37 37 H 1.08996 * 115.54604 * 34.42681 * 23 14 13 38 38 H 1.09000 * 117.50009 * 359.97438 * 24 23 14 39 39 H 1.09003 * 117.49972 * 145.02396 * 24 23 14 40 40 H 1.09005 * 117.49661 * 214.98014 * 25 23 14 41 41 H 1.08998 * 117.49971 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9847 -0.8350 5 6 3.5406 1.4447 -0.1397 6 1 4.1569 1.8269 0.6606 7 6 4.1266 0.9587 -1.2892 8 7 5.4047 0.6492 -1.2955 9 14 3.1051 0.7398 -2.8377 10 1 3.0689 2.0187 -3.5918 11 1 3.7116 -0.3176 -3.6857 12 1 1.7225 0.3446 -2.4669 13 7 1.6649 2.0944 1.2619 14 6 0.5772 3.0594 1.0526 15 1 -0.0879 2.6933 0.2705 16 6 -0.1985 3.2276 2.3337 17 6 0.4680 3.2697 3.5442 18 6 -0.2417 3.4296 4.7191 19 6 -1.6218 3.5358 4.6846 20 9 -2.3173 3.6856 5.8331 21 6 -2.2887 3.4878 3.4722 22 6 -1.5764 3.3335 2.2980 23 6 1.1656 4.4077 0.6320 24 6 1.0581 5.5663 1.6254 25 6 0.1871 5.5536 0.3667 26 1 -0.3633 0.4969 0.8996 27 1 -0.3633 0.5307 -0.8801 28 1 -0.3634 -1.0274 -0.0195 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8899 31 1 5.8170 0.3069 -2.1041 32 1 2.4633 2.5370 1.6915 33 1 1.5441 3.1816 3.5713 34 1 0.2794 3.4665 5.6644 35 1 -3.3652 3.5701 3.4441 36 1 -2.0963 3.2957 1.3521 37 1 2.0612 4.3571 0.0128 38 1 0.5678 5.3681 2.5785 39 1 1.8828 6.2782 1.6595 40 1 0.4392 6.2572 -0.4268 41 1 -0.8758 5.3468 0.4914 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = -11.502323 kcal Electronic energy + Delta-G solvation = -21953.066396 eV Core-core repulsion = 18747.322066 eV Total energy + Delta-G solvation = -3205.744330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.81292 -40.92686 -38.42531 -37.14209 -34.38196 -33.16979 -32.03759 -31.21461 -28.97059 -26.12871 -24.35219 -23.92802 -23.16349 -22.90789 -21.39468 -20.77463 -19.08401 -18.48981 -17.36146 -17.03334 -16.81161 -16.53846 -16.37414 -15.63718 -15.27857 -15.09056 -14.84821 -14.46125 -14.36400 -14.11643 -13.91449 -13.56593 -13.44074 -13.18506 -12.91683 -12.69875 -12.48819 -12.27105 -12.25467 -12.05047 -11.81565 -11.60416 -11.37973 -11.11693 -11.08374 -10.82951 -10.53160 -9.93776 -9.41109 -9.03866 -8.31258 -6.29044 0.25962 0.38980 1.34485 1.38617 1.47395 2.35748 2.70257 2.89770 3.03912 3.37824 3.60209 3.82369 3.89620 3.96589 4.06142 4.13320 4.22999 4.43527 4.46398 4.51101 4.57724 4.68347 4.77732 4.80745 4.82233 4.95208 5.04934 5.07946 5.09223 5.24662 5.24950 5.29953 5.32615 5.33523 5.44671 5.46002 5.57782 5.71914 5.84197 6.02109 6.08178 6.51406 6.70773 6.90790 7.36439 8.85046 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023378 B = 0.005082 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.405120 B = 5508.212883 C = 5798.238166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.202 3.798 4 H 0.009 0.991 5 C -0.534 4.534 6 H 0.037 0.963 7 C 0.025 3.975 8 N -0.939 5.939 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.225 1.225 13 N -0.666 5.666 14 C 0.159 3.841 15 H 0.084 0.916 16 C -0.066 4.066 17 C -0.073 4.073 18 C -0.158 4.158 19 C 0.073 3.927 20 F -0.151 7.151 21 C -0.149 4.149 22 C -0.091 4.091 23 C -0.193 4.193 24 C -0.173 4.173 25 C -0.164 4.164 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.337 0.663 33 H 0.127 0.873 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.515 7.803 6.515 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.093 3.907 4 H 0.026 0.974 5 C -0.572 4.572 6 H 0.056 0.944 7 C -0.174 4.174 8 N -0.578 5.578 9 Si 0.744 3.256 10 H -0.203 1.203 11 H -0.218 1.218 12 H -0.148 1.148 13 N -0.295 5.295 14 C 0.049 3.951 15 H 0.102 0.898 16 C -0.067 4.067 17 C -0.092 4.092 18 C -0.176 4.176 19 C 0.054 3.946 20 F -0.130 7.130 21 C -0.168 4.168 22 C -0.109 4.109 23 C -0.213 4.213 24 C -0.210 4.210 25 C -0.201 4.201 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.812 7.204 6.656 19.464 hybrid contribution 1.085 0.453 -1.037 1.567 sum -15.727 7.656 5.619 18.372 Atomic orbital electron populations 1.21717 0.95435 1.01000 1.01331 1.21796 0.95542 0.98100 0.99495 1.19267 0.92128 0.91782 0.87561 0.97363 1.21586 0.91883 1.41551 1.02231 0.94433 1.25693 0.95657 0.93953 1.02085 1.70127 1.14058 1.44382 1.29240 0.86296 0.81857 0.77868 0.79541 1.20266 1.21806 1.14754 1.60688 1.11945 1.31575 1.25318 1.20109 0.92808 0.88688 0.93516 0.89821 1.19846 0.93813 0.98400 0.94630 1.20852 1.00548 0.96720 0.91035 1.21252 0.92356 1.03782 1.00242 1.17880 0.90209 1.04545 0.81988 1.91460 1.79447 1.93470 1.48578 1.21250 1.01661 1.03274 0.90575 1.21050 0.92746 0.98425 0.98675 1.23075 1.01833 0.91574 1.04801 1.23121 1.02802 1.00196 0.94871 1.22973 0.97402 1.00224 0.99536 0.91854 0.93627 0.92950 0.94535 0.93795 0.92702 0.84503 0.85488 0.83928 0.82950 0.83454 0.89753 0.87929 0.89110 0.88527 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.02 71.98 0.65 -3.85 16 2 C -0.11 -4.58 4.92 30.59 0.15 -4.43 16 3 C 0.20 8.76 1.56 44.17 0.07 8.82 16 4 H 0.01 0.38 6.15 -2.39 -0.01 0.36 16 5 C -0.53 -28.83 9.02 25.60 0.23 -28.60 16 6 H 0.04 2.25 7.63 -2.91 -0.02 2.23 16 7 C 0.03 1.40 5.30 84.66 0.45 1.85 16 8 N -0.94 -57.22 13.96 21.45 0.30 -56.92 16 9 Si 0.92 42.32 25.84 68.60 1.77 44.09 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.22 -9.34 5.54 99.48 0.55 -8.79 16 13 N -0.67 -24.38 5.19 -477.13 -2.48 -26.86 16 14 C 0.16 4.68 1.71 44.17 0.08 4.76 16 15 H 0.08 2.48 6.67 -2.39 -0.02 2.46 16 16 C -0.07 -1.66 3.40 -19.86 -0.07 -1.73 16 17 C -0.07 -1.84 7.57 22.26 0.17 -1.68 16 18 C -0.16 -3.63 10.03 22.31 0.22 -3.41 16 19 C 0.07 1.67 7.30 22.37 0.16 1.83 16 20 F -0.15 -3.60 17.27 44.97 0.78 -2.82 16 21 C -0.15 -2.99 10.03 22.31 0.22 -2.76 16 22 C -0.09 -1.90 9.20 22.26 0.20 -1.69 16 23 C -0.19 -5.56 5.64 -10.80 -0.06 -5.62 16 24 C -0.17 -4.20 9.50 30.62 0.29 -3.91 16 25 C -0.16 -3.72 10.02 30.62 0.31 -3.41 16 26 H 0.06 1.98 7.16 -2.38 -0.02 1.96 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.60 4.92 -2.38 -0.01 1.58 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.34 13.08 6.97 -89.70 -0.63 12.45 16 33 H 0.13 3.36 7.26 -2.91 -0.02 3.34 16 34 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.15 2.48 8.04 -2.91 -0.02 2.45 16 37 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.10 2.42 5.42 -2.39 -0.01 2.41 16 39 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.11 2.09 7.67 -2.39 -0.02 2.07 16 Total: -1.00 -60.68 327.40 3.70 -56.98 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.25 Total: 29.36 kcal Atomic # 6 Polarization: -46.90 SS G_CDS: 3.08 Total: -43.82 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -2.18 Total: -83.78 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.77 Total: 44.09 kcal Total: -60.68 3.70 -56.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.479 kcal (2) G-P(sol) polarization free energy of solvation -60.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds