Wall clock time and date at job start Mon Mar 30 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47058 * 2 1 4 4 N 1.46497 * 109.47522 * 179.97438 * 3 2 1 5 5 C 1.37103 * 119.99699 * 87.94840 * 4 3 2 6 6 H 1.07997 * 119.99872 * 167.94942 * 5 4 3 7 7 C 1.38947 * 120.00128 * 347.94310 * 5 4 3 8 8 N 1.31416 * 120.00119 * 357.99045 * 7 5 4 9 9 Si 1.86798 * 120.00154 * 177.98589 * 7 5 4 10 10 H 1.48499 * 109.47120 * 90.00301 * 9 7 5 11 11 H 1.48500 * 109.47204 * 210.00320 * 9 7 5 12 12 H 1.48504 * 109.47167 * 330.00254 * 9 7 5 13 13 C 1.34771 * 120.00417 * 267.95236 * 4 3 2 14 14 O 1.21299 * 119.99785 * 3.08200 * 13 4 3 15 15 C 1.50702 * 120.00324 * 183.08049 * 13 4 3 16 16 H 1.08999 * 109.46372 * 325.27998 * 15 13 4 17 17 C 1.53111 * 109.46640 * 205.29705 * 15 13 4 18 18 C 1.53366 * 109.50519 * 169.71070 * 17 15 13 19 19 C 1.50834 * 108.37566 * 49.96240 * 18 17 15 20 20 C 1.39294 * 127.89978 * 163.32001 * 19 18 17 21 21 N 1.31063 * 108.08346 * 180.15086 * 20 19 18 22 22 N 1.40302 * 108.26869 * 0.02562 * 21 20 19 23 23 H 0.97004 * 126.09115 * 179.97438 * 22 21 20 24 24 C 1.34320 * 107.81465 * 359.94339 * 22 21 20 25 25 C 1.50827 * 128.03505 * 180.10547 * 24 22 21 26 26 H 1.09005 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47291 * 299.99399 * 1 2 3 28 28 H 1.08993 * 109.47497 * 60.00037 * 1 2 3 29 29 H 1.08997 * 109.47184 * 240.00363 * 2 1 3 30 30 H 1.08993 * 109.47497 * 119.99963 * 2 1 3 31 31 H 1.09002 * 109.47274 * 60.00301 * 3 2 1 32 32 H 1.09001 * 109.46933 * 300.00610 * 3 2 1 33 33 H 0.96998 * 119.99839 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46555 * 289.72928 * 17 15 13 35 35 H 1.09002 * 109.45766 * 49.70441 * 17 15 13 36 36 H 1.08997 * 109.68957 * 290.23608 * 18 17 15 37 37 H 1.09001 * 109.67520 * 169.67482 * 18 17 15 38 38 H 1.08004 * 125.96173 * 0.18656 * 20 19 18 39 39 H 1.09002 * 109.68036 * 43.73024 * 25 24 22 40 40 H 1.09005 * 109.71174 * 283.19578 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1909 1.4000 -1.1857 6 1 5.2530 1.5949 -1.2026 7 6 3.5196 1.1060 -2.3662 8 7 2.2350 0.8300 -2.3404 9 14 4.4431 1.1032 -3.9900 10 1 4.9830 -0.2555 -4.2500 11 1 3.5177 1.4863 -5.0864 12 1 5.5627 2.0766 -3.9244 13 6 4.1784 1.4846 1.1673 14 8 3.5728 1.4657 2.2181 15 6 5.6837 1.5548 1.1663 16 1 6.0736 0.9794 0.3266 17 6 6.2225 0.9742 2.4766 18 6 7.7436 0.8068 2.3754 19 6 8.3327 2.1036 1.8791 20 6 9.6615 2.5174 1.9371 21 7 9.7405 3.7090 1.3971 22 7 8.4561 4.0883 0.9788 23 1 8.2196 4.9235 0.5458 24 6 7.6125 3.0886 1.2842 25 6 6.1267 3.0176 1.0347 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 1.7664 0.6251 -3.1646 34 1 5.9852 1.6501 3.2981 35 1 5.7616 0.0036 2.6603 36 1 7.9791 0.0050 1.6756 37 1 8.1529 0.5697 3.3574 38 1 10.4836 1.9542 2.3538 39 1 5.9055 3.3784 0.0303 40 1 5.6011 3.6288 1.7684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079687035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:27 Heat of formation + Delta-G solvation = 35.409877 kcal Electronic energy + Delta-G solvation = -22263.298361 eV Core-core repulsion = 19079.508258 eV Total energy + Delta-G solvation = -3183.790103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30826 -38.90137 -36.01686 -34.87723 -32.46553 -32.07703 -31.43420 -29.38640 -28.86422 -25.89838 -24.70349 -23.31856 -22.17586 -21.33936 -20.30867 -19.19590 -18.42449 -17.39123 -16.48478 -16.19343 -14.93787 -14.38486 -14.34740 -14.20293 -14.01551 -13.62310 -13.39076 -13.20425 -12.81910 -12.75423 -12.44334 -12.09516 -11.65530 -11.48157 -11.32821 -11.15757 -11.02247 -10.66029 -10.60568 -10.41995 -10.28358 -10.25462 -10.18664 -10.02246 -9.68066 -9.32852 -8.78124 -8.33212 -8.06551 -7.73237 -6.27777 -3.96279 2.05677 2.95683 2.98158 3.06289 3.15678 3.16308 3.84633 4.00831 4.66025 4.92671 5.00256 5.02155 5.22443 5.43241 5.53109 5.69152 5.79669 5.86988 5.99307 6.08621 6.14404 6.17773 6.21608 6.30539 6.40165 6.51650 6.59518 6.62972 6.76811 6.80487 6.89724 6.96798 7.10616 7.15985 7.27888 7.44354 7.54661 7.77279 7.82316 7.89699 8.43913 9.02717 9.51567 9.90902 10.58376 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.006094 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.126741 B = 4593.810196 C = 5649.126992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 C 0.139 3.861 4 N -0.440 5.440 5 C -0.326 4.326 6 H 0.099 0.901 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.923 3.077 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.456 3.544 14 O -0.608 6.608 15 C -0.083 4.083 16 H 0.094 0.906 17 C -0.096 4.096 18 C -0.040 4.040 19 C -0.241 4.241 20 C 0.055 3.945 21 N -0.309 5.309 22 N -0.472 5.472 23 H 0.436 0.564 24 C 0.103 3.897 25 C -0.046 4.046 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.024 0.976 31 H 0.031 0.969 32 H 0.107 0.893 33 H 0.266 0.734 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.180 0.820 39 H 0.089 0.911 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.634 1.560 2.670 7.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 C 0.016 3.984 4 N -0.157 5.157 5 C -0.453 4.453 6 H 0.117 0.883 7 C -0.172 4.172 8 N -0.503 5.503 9 Si 0.750 3.250 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.244 3.756 14 O -0.495 6.495 15 C -0.105 4.105 16 H 0.112 0.888 17 C -0.134 4.134 18 C -0.078 4.078 19 C -0.252 4.252 20 C -0.130 4.130 21 N -0.132 5.132 22 N -0.180 5.180 23 H 0.279 0.721 24 C -0.027 4.027 25 C -0.085 4.085 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.197 0.803 39 H 0.107 0.893 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.955 2.468 2.698 7.858 hybrid contribution -0.185 -0.262 -1.059 1.106 sum 6.771 2.206 1.639 7.307 Atomic orbital electron populations 1.21566 0.97811 0.99491 1.00319 1.21855 0.93603 0.98537 1.01220 1.21460 0.79541 0.97034 1.00332 1.43880 1.05914 1.61290 1.04606 1.19742 0.94221 1.47258 0.84128 0.88349 1.25260 0.95964 0.96355 0.99633 1.70186 1.07742 1.44977 1.27408 0.85987 0.79001 0.78696 0.81358 1.20328 1.20800 1.19698 1.19898 0.88601 0.83263 0.83867 1.90530 1.69948 1.57534 1.31450 1.21041 0.94560 0.95129 0.99762 0.88766 1.21383 0.93458 1.01702 0.96888 1.20026 0.94925 0.92780 1.00075 1.19974 0.92953 0.99907 1.12385 1.23540 0.97145 0.93296 0.99041 1.77403 0.99231 1.15838 1.20729 1.46013 1.05563 1.16988 1.49400 0.72077 1.21105 0.94221 0.89400 0.97936 1.20271 0.86612 0.98312 1.03307 0.94601 0.94679 0.92851 0.88602 0.95722 0.95082 0.87515 0.92304 0.91516 0.91284 0.91405 0.91363 0.80343 0.89268 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.91 37.16 0.37 -2.20 16 2 C -0.11 -2.58 5.57 -26.73 -0.15 -2.73 16 3 C 0.14 3.31 4.65 -4.04 -0.02 3.30 16 4 N -0.44 -10.55 2.63 -114.81 -0.30 -10.85 16 5 C -0.33 -7.66 9.13 -14.93 -0.14 -7.79 16 6 H 0.10 2.18 5.53 -52.49 -0.29 1.89 16 7 C 0.03 0.72 5.36 -17.47 -0.09 0.63 16 8 N -0.86 -20.56 7.29 55.50 0.40 -20.15 16 9 Si 0.92 18.58 29.55 -169.99 -5.02 13.56 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 12 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 13 C 0.46 10.47 6.70 -10.99 -0.07 10.40 16 14 O -0.61 -15.57 15.85 5.54 0.09 -15.48 16 15 C -0.08 -1.54 1.65 -91.51 -0.15 -1.69 16 16 H 0.09 1.80 6.47 -51.93 -0.34 1.46 16 17 C -0.10 -1.61 4.60 -26.48 -0.12 -1.73 16 18 C -0.04 -0.55 6.28 -27.63 -0.17 -0.72 16 19 C -0.24 -3.59 5.91 -105.05 -0.62 -4.21 16 20 C 0.05 0.76 12.00 -17.49 -0.21 0.55 16 21 N -0.31 -4.67 12.71 30.54 0.39 -4.28 16 22 N -0.47 -6.66 7.34 33.48 0.25 -6.41 16 23 H 0.44 4.87 8.96 -182.44 -1.64 3.23 16 24 C 0.10 1.59 7.08 -82.33 -0.58 1.00 16 25 C -0.05 -0.75 5.52 -27.61 -0.15 -0.90 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.10 2.35 6.00 -51.93 -0.31 2.03 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.76 7.40 -51.93 -0.38 0.37 16 32 H 0.11 2.64 5.91 -51.93 -0.31 2.34 16 33 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 34 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 35 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.18 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.09 1.45 7.67 -51.93 -0.40 1.06 16 40 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -27.94 318.55 -8.53 -36.48 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.02 Total: 8.45 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.12 Total: -6.10 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.74 Total: -41.70 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.48 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.94 -8.53 -36.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079687035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.887 kcal (2) G-P(sol) polarization free energy of solvation -27.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds