Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47058 * 2 1 4 4 N 1.46497 * 109.47522 * 179.97438 * 3 2 1 5 5 C 1.37103 * 119.99699 * 87.94840 * 4 3 2 6 6 H 1.07997 * 119.99872 * 167.94942 * 5 4 3 7 7 C 1.38947 * 120.00128 * 347.94310 * 5 4 3 8 8 N 1.31416 * 120.00119 * 357.99045 * 7 5 4 9 9 Si 1.86798 * 120.00154 * 177.98589 * 7 5 4 10 10 H 1.48499 * 109.47120 * 90.00301 * 9 7 5 11 11 H 1.48500 * 109.47204 * 210.00320 * 9 7 5 12 12 H 1.48504 * 109.47167 * 330.00254 * 9 7 5 13 13 C 1.34771 * 120.00417 * 267.95236 * 4 3 2 14 14 O 1.21299 * 119.99785 * 3.08200 * 13 4 3 15 15 C 1.50702 * 120.00324 * 183.08049 * 13 4 3 16 16 H 1.08999 * 109.46372 * 325.27998 * 15 13 4 17 17 C 1.53111 * 109.46640 * 205.29705 * 15 13 4 18 18 C 1.53366 * 109.50519 * 169.71070 * 17 15 13 19 19 C 1.50834 * 108.37566 * 49.96240 * 18 17 15 20 20 C 1.39294 * 127.89978 * 163.32001 * 19 18 17 21 21 N 1.31063 * 108.08346 * 180.15086 * 20 19 18 22 22 N 1.40302 * 108.26869 * 0.02562 * 21 20 19 23 23 H 0.97004 * 126.09115 * 179.97438 * 22 21 20 24 24 C 1.34320 * 107.81465 * 359.94339 * 22 21 20 25 25 C 1.50827 * 128.03505 * 180.10547 * 24 22 21 26 26 H 1.09005 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47291 * 299.99399 * 1 2 3 28 28 H 1.08993 * 109.47497 * 60.00037 * 1 2 3 29 29 H 1.08997 * 109.47184 * 240.00363 * 2 1 3 30 30 H 1.08993 * 109.47497 * 119.99963 * 2 1 3 31 31 H 1.09002 * 109.47274 * 60.00301 * 3 2 1 32 32 H 1.09001 * 109.46933 * 300.00610 * 3 2 1 33 33 H 0.96998 * 119.99839 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46555 * 289.72928 * 17 15 13 35 35 H 1.09002 * 109.45766 * 49.70441 * 17 15 13 36 36 H 1.08997 * 109.68957 * 290.23608 * 18 17 15 37 37 H 1.09001 * 109.67520 * 169.67482 * 18 17 15 38 38 H 1.08004 * 125.96173 * 0.18656 * 20 19 18 39 39 H 1.09002 * 109.68036 * 43.73024 * 25 24 22 40 40 H 1.09005 * 109.71174 * 283.19578 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1909 1.4000 -1.1857 6 1 5.2530 1.5949 -1.2026 7 6 3.5196 1.1060 -2.3662 8 7 2.2350 0.8300 -2.3404 9 14 4.4431 1.1032 -3.9900 10 1 4.9830 -0.2555 -4.2500 11 1 3.5177 1.4863 -5.0864 12 1 5.5627 2.0766 -3.9244 13 6 4.1784 1.4846 1.1673 14 8 3.5728 1.4657 2.2181 15 6 5.6837 1.5548 1.1663 16 1 6.0736 0.9794 0.3266 17 6 6.2225 0.9742 2.4766 18 6 7.7436 0.8068 2.3754 19 6 8.3327 2.1036 1.8791 20 6 9.6615 2.5174 1.9371 21 7 9.7405 3.7090 1.3971 22 7 8.4561 4.0883 0.9788 23 1 8.2196 4.9235 0.5458 24 6 7.6125 3.0886 1.2842 25 6 6.1267 3.0176 1.0347 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 1.7664 0.6251 -3.1646 34 1 5.9852 1.6501 3.2981 35 1 5.7616 0.0036 2.6603 36 1 7.9791 0.0050 1.6756 37 1 8.1529 0.5697 3.3574 38 1 10.4836 1.9542 2.3538 39 1 5.9055 3.3784 0.0303 40 1 5.6011 3.6288 1.7684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079687035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = 20.320502 kcal Electronic energy + Delta-G solvation = -22263.952685 eV Core-core repulsion = 19079.508258 eV Total energy + Delta-G solvation = -3184.444427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.46389 -40.65124 -37.60043 -36.56771 -34.00027 -33.53947 -33.18665 -30.69631 -30.08319 -27.64931 -26.44678 -24.67355 -23.52908 -22.50085 -22.03658 -20.96155 -19.74357 -18.81115 -18.02506 -17.89444 -16.33921 -16.15578 -15.86084 -15.73546 -15.36680 -15.15966 -14.79064 -14.62346 -14.46152 -14.05548 -13.73840 -13.64523 -13.31755 -13.06783 -12.80760 -12.72303 -12.55055 -12.32515 -12.27222 -12.03779 -11.95057 -11.63454 -11.55968 -11.49248 -11.44905 -10.65783 -10.44250 -10.17194 -9.60710 -9.20989 -8.08408 -5.82541 0.91254 1.43770 1.50922 1.59147 1.84811 1.88077 2.13873 2.31663 3.01035 3.20360 3.68468 3.87093 3.96420 4.03155 4.27593 4.32057 4.46567 4.49221 4.56359 4.63319 4.70006 4.73451 4.76553 4.89552 4.96186 5.03481 5.13673 5.18198 5.30054 5.34408 5.38937 5.39677 5.47836 5.49305 5.68816 5.79204 5.90259 6.00872 6.39307 6.58290 6.73784 7.18998 7.67574 8.07344 8.78411 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.006094 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.126741 B = 4593.810196 C = 5649.126992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.142 3.858 4 N -0.451 5.451 5 C -0.343 4.343 6 H 0.110 0.890 7 C -0.006 4.006 8 N -0.880 5.880 9 Si 0.986 3.014 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.445 3.555 14 O -0.641 6.641 15 C -0.075 4.075 16 H 0.091 0.909 17 C -0.092 4.092 18 C -0.030 4.030 19 C -0.249 4.249 20 C 0.059 3.941 21 N -0.325 5.325 22 N -0.469 5.469 23 H 0.446 0.554 24 C 0.091 3.909 25 C -0.035 4.035 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.005 0.995 31 H 0.017 0.983 32 H 0.098 0.902 33 H 0.267 0.733 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.214 0.786 39 H 0.087 0.913 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 1.341 2.182 8.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.019 3.981 4 N -0.167 5.167 5 C -0.470 4.470 6 H 0.127 0.873 7 C -0.207 4.207 8 N -0.519 5.519 9 Si 0.811 3.189 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.234 3.766 14 O -0.531 6.531 15 C -0.097 4.097 16 H 0.109 0.891 17 C -0.130 4.130 18 C -0.068 4.068 19 C -0.260 4.260 20 C -0.126 4.126 21 N -0.148 5.148 22 N -0.177 5.177 23 H 0.291 0.709 24 C -0.039 4.039 25 C -0.074 4.074 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.024 0.976 31 H 0.035 0.965 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.230 0.770 39 H 0.105 0.895 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.619 2.265 2.201 9.179 hybrid contribution -0.753 -0.195 -0.888 1.180 sum 7.866 2.071 1.313 8.239 Atomic orbital electron populations 1.21477 0.95053 1.00975 1.00766 1.21715 0.96045 0.97189 0.99264 1.21389 0.80186 0.97549 0.98995 1.44113 1.06007 1.61237 1.05343 1.20056 0.94852 1.47990 0.84137 0.87261 1.25994 0.96725 0.95805 1.02207 1.70276 1.08690 1.44852 1.28100 0.85017 0.77918 0.78483 0.77484 1.20439 1.20946 1.18938 1.20664 0.90493 0.82350 0.83058 1.90493 1.71162 1.58945 1.32465 1.20968 0.91190 0.96759 1.00740 0.89076 1.21342 0.95745 1.00580 0.95321 1.19994 0.92272 0.92742 1.01827 1.20205 0.93616 1.00029 1.12195 1.24068 0.97563 0.92826 0.98094 1.77391 0.99498 1.16648 1.21283 1.46030 1.05146 1.17236 1.49307 0.70898 1.20914 0.93553 0.90429 0.99030 1.20046 0.87772 0.96541 1.03064 0.92605 0.93876 0.92690 0.90245 0.97632 0.96476 0.88412 0.92209 0.92548 0.92382 0.90396 0.88800 0.76963 0.89453 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 9.91 71.98 0.71 -4.00 16 2 C -0.10 -4.78 5.57 30.59 0.17 -4.61 16 3 C 0.14 6.94 4.65 86.38 0.40 7.34 16 4 N -0.45 -22.06 2.63 -635.54 -1.67 -23.73 16 5 C -0.34 -16.16 9.13 84.04 0.77 -15.40 16 6 H 0.11 4.79 5.53 -2.91 -0.02 4.78 16 7 C -0.01 -0.28 5.36 84.93 0.46 0.18 16 8 N -0.88 -41.95 7.29 21.66 0.16 -41.79 16 9 Si 0.99 37.43 29.55 68.60 2.03 39.46 16 10 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 12 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 13 C 0.44 20.92 6.70 87.66 0.59 21.51 16 14 O -0.64 -33.89 15.85 -3.09 -0.05 -33.94 16 15 C -0.07 -2.78 1.65 -11.37 -0.02 -2.80 16 16 H 0.09 3.44 6.47 -2.39 -0.02 3.42 16 17 C -0.09 -3.02 4.60 30.75 0.14 -2.88 16 18 C -0.03 -0.77 6.28 30.01 0.19 -0.58 16 19 C -0.25 -6.82 5.91 -20.14 -0.12 -6.94 16 20 C 0.06 1.46 12.00 85.06 1.02 2.48 16 21 N -0.33 -9.04 12.71 -57.28 -0.73 -9.76 16 22 N -0.47 -12.42 7.34 -47.99 -0.35 -12.77 16 23 H 0.45 9.36 8.96 -213.19 -1.91 7.45 16 24 C 0.09 2.66 7.08 41.64 0.29 2.96 16 25 C -0.03 -1.13 5.52 30.02 0.17 -0.96 16 26 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 3.94 6.00 -2.39 -0.01 3.93 16 30 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.02 0.86 7.40 -2.39 -0.02 0.84 16 32 H 0.10 4.96 5.91 -2.39 -0.01 4.94 16 33 H 0.27 12.17 8.31 -92.71 -0.77 11.40 16 34 H 0.06 1.95 8.11 -2.39 -0.02 1.93 16 35 H 0.06 2.01 8.11 -2.39 -0.02 1.99 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.21 3.50 8.06 -2.91 -0.02 3.47 16 39 H 0.09 2.83 7.67 -2.39 -0.02 2.81 16 40 H 0.08 2.64 8.12 -2.38 -0.02 2.62 16 Total: -1.00 -59.55 318.55 3.30 -56.25 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.85 Total: 29.99 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 4.77 Total: -3.71 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -2.59 Total: -88.05 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.05 Total: -33.94 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -59.55 3.30 -56.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079687035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.566 kcal (2) G-P(sol) polarization free energy of solvation -59.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds