Wall clock time and date at job start Mon Mar 30 2020 03:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46961 * 2 1 4 4 N 1.46498 * 109.47165 * 179.97438 * 3 2 1 5 5 C 1.37092 * 120.00374 * 270.00225 * 4 3 2 6 6 H 1.08004 * 120.00336 * 144.04560 * 5 4 3 7 7 C 1.38951 * 119.99803 * 324.04740 * 5 4 3 8 8 N 1.31412 * 120.00182 * 337.02976 * 7 5 4 9 9 Si 1.86807 * 119.99962 * 157.03177 * 7 5 4 10 10 H 1.48496 * 109.47238 * 89.99799 * 9 7 5 11 11 H 1.48501 * 109.46881 * 210.00159 * 9 7 5 12 12 H 1.48501 * 109.47119 * 329.99792 * 9 7 5 13 13 C 1.34782 * 119.99902 * 90.00121 * 4 3 2 14 14 O 1.21294 * 119.99887 * 4.80403 * 13 4 3 15 15 C 1.50696 * 120.00294 * 184.80658 * 13 4 3 16 16 H 1.09003 * 109.46152 * 35.73227 * 15 13 4 17 17 C 1.53100 * 109.46655 * 155.71501 * 15 13 4 18 18 C 1.53362 * 109.51353 * 190.27870 * 17 15 13 19 19 C 1.50844 * 108.37945 * 310.04946 * 18 17 15 20 20 C 1.39299 * 127.89796 * 196.62805 * 19 18 17 21 21 N 1.31070 * 108.07455 * 179.90274 * 20 19 18 22 22 N 1.40289 * 108.27174 * 0.02562 * 21 20 19 23 23 H 0.97009 * 126.09017 * 180.02562 * 22 21 20 24 24 C 1.34319 * 107.81813 * 0.06177 * 22 21 20 25 25 C 1.50829 * 128.03662 * 179.89884 * 24 22 21 26 26 H 1.09001 * 109.47172 * 59.99916 * 1 2 3 27 27 H 1.08993 * 109.47442 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47171 * 300.00167 * 1 2 3 29 29 H 1.09002 * 109.47282 * 240.00372 * 2 1 3 30 30 H 1.08989 * 109.47007 * 119.99790 * 2 1 3 31 31 H 1.09000 * 109.47314 * 59.99920 * 3 2 1 32 32 H 1.09001 * 109.47245 * 300.00039 * 3 2 1 33 33 H 0.97000 * 120.00217 * 185.34771 * 8 7 5 34 34 H 1.09005 * 109.46135 * 70.27069 * 17 15 13 35 35 H 1.08992 * 109.46310 * 310.28772 * 17 15 13 36 36 H 1.09003 * 109.68172 * 69.77119 * 18 17 15 37 37 H 1.08999 * 109.68409 * 190.32882 * 18 17 15 38 38 H 1.07995 * 125.96028 * 359.90737 * 20 19 18 39 39 H 1.08992 * 109.68482 * 76.85825 * 25 24 22 40 40 H 1.09003 * 109.71385 * 316.32179 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.4428 1.1881 6 1 5.1157 0.8936 1.2777 7 6 3.6933 2.1494 2.2766 8 7 2.8635 3.1505 2.0868 9 14 4.2052 1.6762 4.0097 10 1 5.4244 2.4339 4.3900 11 1 3.1068 1.9985 4.9556 12 1 4.4914 0.2200 4.0612 13 6 4.1793 1.4425 -1.1664 14 8 3.5765 1.5303 -2.2152 15 6 5.6823 1.3332 -1.1681 16 1 5.9994 0.6739 -0.3601 17 6 6.1506 0.7595 -2.5081 18 6 7.6409 0.4078 -2.4220 19 6 8.3791 1.5988 -1.8634 20 6 9.7480 1.8537 -1.9054 21 7 9.9670 2.9983 -1.3055 22 7 8.7363 3.5053 -0.8625 23 1 8.5999 4.3394 -0.3863 24 6 7.7804 2.6298 -1.2146 25 6 6.2963 2.7229 -0.9622 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.5775 3.6927 2.8386 34 1 5.9969 1.4996 -3.2936 35 1 5.5782 -0.1389 -2.7385 36 1 7.7781 -0.4506 -1.7645 37 1 8.0209 0.1737 -3.4165 38 1 10.4978 1.2190 -2.3540 39 1 5.8484 3.4282 -1.6621 40 1 6.1173 3.0565 0.0600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079687038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:31 Heat of formation + Delta-G solvation = 20.016431 kcal Electronic energy + Delta-G solvation = -22210.119998 eV Core-core repulsion = 19025.662385 eV Total energy + Delta-G solvation = -3184.457613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23829 -38.88362 -35.91468 -34.82112 -32.85906 -32.24073 -31.30211 -29.35322 -28.80269 -25.95221 -24.78033 -23.32842 -22.20130 -21.31315 -20.55206 -19.15296 -18.37532 -17.29462 -16.44216 -16.04314 -14.84212 -14.76844 -14.37419 -14.17625 -14.02929 -13.86022 -13.42589 -13.19775 -12.84081 -12.75047 -12.41445 -12.19633 -11.67001 -11.51310 -11.35595 -11.30812 -11.13109 -10.97965 -10.68877 -10.52057 -10.37313 -10.26107 -10.21406 -10.07838 -9.73877 -9.25323 -9.15691 -8.39074 -8.00337 -7.52506 -6.44697 -4.10340 2.13803 3.01582 3.03110 3.07881 3.16080 3.19849 3.84229 4.04956 4.64531 4.84708 5.02785 5.07760 5.28034 5.48233 5.58628 5.74547 5.75818 5.78371 5.87346 5.94841 6.02550 6.07009 6.13781 6.28944 6.33096 6.41030 6.49859 6.58395 6.62293 6.66721 6.71088 6.78720 6.83283 6.94474 7.10105 7.32003 7.46906 7.52124 7.89413 7.90779 8.31517 9.01845 9.48184 9.91243 10.56969 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016798 B = 0.006386 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.503173 B = 4383.796688 C = 5520.516485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.111 3.889 4 N -0.436 5.436 5 C -0.343 4.343 6 H 0.090 0.910 7 C 0.048 3.952 8 N -0.857 5.857 9 Si 0.907 3.093 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.474 3.526 14 O -0.604 6.604 15 C -0.077 4.077 16 H 0.090 0.910 17 C -0.099 4.099 18 C -0.038 4.038 19 C -0.246 4.246 20 C 0.054 3.946 21 N -0.311 5.311 22 N -0.471 5.471 23 H 0.436 0.564 24 C 0.108 3.892 25 C -0.042 4.042 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.054 0.946 33 H 0.270 0.730 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.179 0.821 39 H 0.083 0.917 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 -3.014 -2.719 6.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.013 4.013 4 N -0.153 5.153 5 C -0.471 4.471 6 H 0.108 0.892 7 C -0.159 4.159 8 N -0.493 5.493 9 Si 0.733 3.267 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.263 3.737 14 O -0.490 6.490 15 C -0.099 4.099 16 H 0.108 0.892 17 C -0.137 4.137 18 C -0.076 4.076 19 C -0.257 4.257 20 C -0.131 4.131 21 N -0.134 5.134 22 N -0.178 5.178 23 H 0.280 0.720 24 C -0.022 4.022 25 C -0.082 4.082 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.196 0.804 39 H 0.101 0.899 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.785 -2.025 -2.740 6.714 hybrid contribution -0.351 -0.249 1.159 1.236 sum 5.434 -2.273 -1.581 6.099 Atomic orbital electron populations 1.21659 0.96616 1.00444 1.01396 1.21821 0.94668 0.99425 1.01236 1.21450 0.81652 0.94610 1.03558 1.43468 1.04650 1.62644 1.04522 1.19369 1.08689 1.31443 0.87615 0.89232 1.25300 0.96483 0.94094 1.00004 1.69867 1.32749 1.14451 1.32252 0.86248 0.78329 0.79579 0.82502 1.20332 1.20684 1.19231 1.20256 0.88728 0.80623 0.84108 1.90523 1.70299 1.55996 1.32137 1.20943 0.93730 0.96428 0.98832 0.89166 1.21419 0.94079 1.01345 0.96865 1.19998 0.93988 0.94002 0.99638 1.19945 0.93120 1.00792 1.11885 1.23517 0.96027 0.94641 0.98891 1.77392 1.02745 1.13306 1.19934 1.46020 1.04405 1.20213 1.47208 0.72001 1.21182 0.92973 0.91038 0.97018 1.20189 0.85560 0.98316 1.04092 0.93157 0.93630 0.92990 0.93137 0.92251 0.87800 0.92721 0.91923 0.91463 0.91479 0.91578 0.91441 0.80442 0.89906 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.64 6.26 -26.73 -0.17 -2.81 16 3 C 0.11 2.56 5.05 -4.04 -0.02 2.54 16 4 N -0.44 -10.37 2.53 -114.81 -0.29 -10.66 16 5 C -0.34 -8.13 8.07 -14.94 -0.12 -8.25 16 6 H 0.09 2.05 6.43 -52.48 -0.34 1.71 16 7 C 0.05 1.13 4.93 -17.47 -0.09 1.05 16 8 N -0.86 -21.47 11.45 55.50 0.64 -20.83 16 9 Si 0.91 18.65 29.62 -169.99 -5.03 13.61 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 C 0.47 10.91 6.71 -10.98 -0.07 10.84 16 14 O -0.60 -15.33 15.81 5.55 0.09 -15.24 16 15 C -0.08 -1.46 1.79 -91.56 -0.16 -1.63 16 16 H 0.09 1.71 6.49 -51.93 -0.34 1.38 16 17 C -0.10 -1.65 4.59 -26.49 -0.12 -1.77 16 18 C -0.04 -0.53 6.28 -27.63 -0.17 -0.70 16 19 C -0.25 -3.77 5.91 -105.05 -0.62 -4.39 16 20 C 0.05 0.78 12.00 -17.48 -0.21 0.57 16 21 N -0.31 -4.88 12.71 30.54 0.39 -4.49 16 22 N -0.47 -7.06 7.34 33.48 0.25 -6.82 16 23 H 0.44 5.38 8.96 -182.45 -1.64 3.75 16 24 C 0.11 1.75 7.08 -82.33 -0.58 1.16 16 25 C -0.04 -0.74 5.48 -27.65 -0.15 -0.90 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.19 8.14 -51.94 -0.42 0.77 16 31 H 0.10 2.55 5.46 -51.93 -0.28 2.26 16 32 H 0.05 1.32 7.36 -51.93 -0.38 0.94 16 33 H 0.27 6.43 8.32 -40.82 -0.34 6.09 16 34 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.18 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 40 H 0.10 1.85 7.59 -51.93 -0.39 1.45 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -28.43 324.85 -8.35 -36.78 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.15 Total: 9.03 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.12 Total: -6.29 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.98 Total: -42.80 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.09 Total: -15.24 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.43 -8.35 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079687038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.796 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds