Wall clock time and date at job start Mon Mar 30 2020 02:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47239 * 2 1 4 4 H 1.09003 * 109.47086 * 305.00518 * 3 2 1 5 5 C 1.53000 * 109.46622 * 65.00081 * 3 2 1 6 6 N 1.46494 * 109.47085 * 185.00009 * 3 2 1 7 7 N 1.39929 * 125.75572 * 300.04132 * 6 3 2 8 8 C 1.30442 * 108.91947 * 179.67979 * 7 6 3 9 9 C 1.41318 * 108.02419 * 0.44666 * 8 7 6 10 10 C 1.47351 * 126.42259 * 179.81823 * 9 8 7 11 11 O 1.21633 * 120.00310 * 185.39299 * 10 9 8 12 12 N 1.34781 * 120.00198 * 5.11487 * 10 9 8 13 13 C 1.36975 * 120.00173 * 180.27874 * 12 10 9 14 14 H 1.07997 * 120.00231 * 359.97438 * 13 12 10 15 15 C 1.38975 * 119.99905 * 180.02562 * 13 12 10 16 16 N 1.31416 * 120.00277 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00034 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46899 * 90.00017 * 17 15 13 19 19 H 1.48504 * 109.47088 * 209.99710 * 17 15 13 20 20 H 1.48493 * 109.47142 * 329.99825 * 17 15 13 21 21 C 1.34286 * 125.74896 * 120.00847 * 6 3 2 22 22 C 1.50705 * 126.29912 * 0.02562 * 21 6 3 23 23 C 1.52993 * 117.49991 * 312.69571 * 22 21 6 24 24 C 1.52992 * 117.50084 * 244.06937 * 22 21 6 25 25 H 1.08999 * 109.46805 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47031 * 299.99890 * 1 2 3 27 27 H 1.09005 * 109.47181 * 59.99696 * 1 2 3 28 28 H 1.09003 * 109.46857 * 240.00579 * 2 1 3 29 29 H 1.08995 * 109.47270 * 120.00318 * 2 1 3 30 30 H 1.09000 * 109.47705 * 60.00118 * 5 3 2 31 31 H 1.09004 * 109.46941 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.47442 * 299.99998 * 5 3 2 33 33 H 1.07994 * 125.98922 * 180.30316 * 8 7 6 34 34 H 0.97001 * 119.99302 * 0.27811 * 12 10 9 35 35 H 0.97003 * 120.00274 * 179.97438 * 16 15 13 36 36 H 1.09001 * 115.54188 * 98.40396 * 22 21 6 37 37 H 1.08999 * 117.49773 * 0.02562 * 23 22 21 38 38 H 1.09003 * 117.49463 * 145.01562 * 23 22 21 39 39 H 1.08997 * 117.50018 * 214.97634 * 24 22 21 40 40 H 1.09002 * 117.49937 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1264 1.3074 6 7 3.5000 1.4442 -0.1204 7 7 4.3950 0.8484 0.7752 8 6 5.6123 1.0425 0.3487 9 6 5.5422 1.7900 -0.8486 10 6 6.6817 2.2374 -1.6687 11 8 6.4936 2.9605 -2.6285 12 7 7.9332 1.8501 -1.3519 13 6 8.9931 2.2707 -2.1109 14 1 8.8259 2.9123 -2.9633 15 6 10.2834 1.8708 -1.7846 16 7 10.4869 1.0896 -0.7476 17 14 11.7288 2.4438 -2.8200 18 1 12.2532 3.7214 -2.2740 19 1 12.7995 1.4152 -2.7877 20 1 11.2829 2.6503 -4.2213 21 6 4.2051 2.0174 -1.1092 22 6 3.6410 2.7701 -2.2867 23 6 2.4817 2.1245 -3.0482 24 6 3.8744 2.1810 -3.6792 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0699 1.5874 2.1492 31 1 1.9990 3.1540 1.3076 32 1 0.5489 2.1251 1.3970 33 1 6.5156 0.6951 0.8279 34 1 8.0833 1.2735 -0.5865 35 1 11.3875 0.8102 -0.5201 36 1 3.6396 3.8561 -2.1933 37 1 2.1267 1.1555 -2.6973 38 1 1.7172 2.7858 -3.4560 39 1 4.0260 2.8794 -4.5022 40 1 4.4355 1.2488 -3.7438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089854113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:28 Heat of formation + Delta-G solvation = 51.605355 kcal Electronic energy + Delta-G solvation = -21779.595055 eV Core-core repulsion = 18596.507241 eV Total energy + Delta-G solvation = -3183.087814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.09693 -37.70184 -36.79485 -36.21495 -33.79103 -31.59199 -30.96224 -29.66250 -28.80267 -25.48013 -24.50157 -23.03251 -22.56384 -21.60143 -21.10699 -19.10493 -18.63380 -17.71037 -16.81515 -15.72573 -15.30267 -15.13008 -14.58271 -14.55269 -14.25869 -13.86405 -13.58855 -13.31089 -12.99626 -12.77417 -12.50666 -12.36093 -11.96682 -11.86840 -11.66338 -11.45230 -11.33283 -11.16682 -11.04929 -10.98895 -10.65935 -10.34446 -10.26712 -10.15163 -9.89013 -9.44705 -8.94821 -8.28388 -8.00436 -7.83720 -6.35845 -3.71933 2.07020 2.63824 2.84711 3.26992 3.30564 3.36492 3.94615 4.23564 4.38476 4.53850 4.62333 4.69737 4.86522 4.97506 5.05174 5.12766 5.21699 5.22862 5.30178 5.42330 5.47847 5.50157 5.59532 5.64020 5.69651 5.76278 5.79625 5.93082 6.03893 6.08230 6.17229 6.19705 6.27673 6.43948 6.68102 7.01016 7.31070 7.61076 8.04460 8.17077 8.72264 9.25878 9.66304 10.20340 10.82410 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.004430 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.116876 B = 6319.223053 C = 6960.956439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.156 3.844 4 H 0.105 0.895 5 C -0.161 4.161 6 N -0.359 5.359 7 N -0.303 5.303 8 C 0.068 3.932 9 C -0.246 4.246 10 C 0.515 3.485 11 O -0.593 6.593 12 N -0.557 5.557 13 C -0.292 4.292 14 H 0.104 0.896 15 C 0.020 3.980 16 N -0.900 5.900 17 Si 0.929 3.071 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.152 3.848 22 C -0.081 4.081 23 C -0.198 4.198 24 C -0.121 4.121 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.187 0.813 34 H 0.391 0.609 35 H 0.271 0.729 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.402 -1.153 1.786 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.123 0.877 5 C -0.219 4.219 6 N -0.140 5.140 7 N -0.123 5.123 8 C -0.118 4.118 9 C -0.261 4.261 10 C 0.302 3.698 11 O -0.479 6.479 12 N -0.192 5.192 13 C -0.422 4.422 14 H 0.122 0.878 15 C -0.181 4.181 16 N -0.542 5.542 17 Si 0.757 3.243 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.021 3.979 22 C -0.101 4.101 23 C -0.235 4.235 24 C -0.158 4.158 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.204 0.796 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.178 -1.282 2.167 19.343 hybrid contribution 1.567 0.220 -0.435 1.641 sum -17.611 -1.062 1.731 17.728 Atomic orbital electron populations 1.21801 0.94630 1.02265 1.02133 1.21856 0.96189 0.95303 1.03648 1.21420 0.74942 0.97907 1.00341 0.87716 1.22162 1.01698 1.01071 0.96958 1.48428 1.05909 1.41984 1.17686 1.76982 0.99363 1.20887 1.15089 1.24084 0.95774 0.97089 0.94881 1.20457 0.93383 1.11504 1.00749 1.16838 0.81968 0.84998 0.86033 1.90576 1.84872 1.41450 1.30975 1.41687 1.04573 1.44627 1.28282 1.19712 0.84473 1.27865 1.10148 0.87818 1.25261 0.98866 0.96892 0.97093 1.69616 1.22888 1.34941 1.26713 0.85866 0.80288 0.78132 0.80049 1.20473 1.20993 1.19434 1.20375 0.90789 0.96012 0.90705 1.20237 1.01764 0.98130 0.89936 1.23212 0.92635 1.02181 1.05458 1.22708 0.95675 1.02934 0.94525 0.92147 0.92115 0.92454 0.91510 0.90466 0.91102 0.92105 0.90775 0.79639 0.77505 0.91901 0.85972 0.89200 0.88389 0.88082 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.16 0.36 -0.74 16 2 C -0.13 -1.35 5.65 -26.73 -0.15 -1.50 16 3 C 0.16 1.80 2.60 -67.93 -0.18 1.62 16 4 H 0.11 1.08 5.60 -51.93 -0.29 0.79 16 5 C -0.16 -1.65 9.20 37.16 0.34 -1.31 16 6 N -0.36 -5.69 3.25 -50.14 -0.16 -5.85 16 7 N -0.30 -5.35 12.33 30.87 0.38 -4.97 16 8 C 0.07 1.29 11.50 -16.97 -0.20 1.10 16 9 C -0.25 -5.16 6.12 -105.06 -0.64 -5.81 16 10 C 0.51 12.85 7.76 -12.55 -0.10 12.75 16 11 O -0.59 -15.98 14.38 5.25 0.08 -15.90 16 12 N -0.56 -14.62 5.27 -11.97 -0.06 -14.68 16 13 C -0.29 -8.24 9.68 -14.98 -0.14 -8.38 16 14 H 0.10 3.03 7.15 -52.49 -0.38 2.66 16 15 C 0.02 0.55 5.50 -17.46 -0.10 0.46 16 16 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 17 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.15 2.73 6.45 -81.56 -0.53 2.21 16 22 C -0.08 -1.27 4.83 -91.78 -0.44 -1.72 16 23 C -0.20 -2.36 8.52 -26.74 -0.23 -2.59 16 24 C -0.12 -1.86 9.10 -26.74 -0.24 -2.11 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 33 H 0.19 3.20 7.52 -52.49 -0.39 2.80 16 34 H 0.39 9.87 6.87 -40.82 -0.28 9.59 16 35 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.09 1.03 7.41 -51.93 -0.38 0.64 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -31.66 333.17 -7.06 -38.72 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.77 Total: 11.53 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.24 Total: -6.01 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.88 Total: -49.54 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.08 Total: -15.90 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.66 -7.06 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089854113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.328 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds