Wall clock time and date at job start Mon Mar 30 2020 02:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47239 * 2 1 4 4 H 1.09003 * 109.47086 * 305.00518 * 3 2 1 5 5 C 1.53000 * 109.46622 * 65.00081 * 3 2 1 6 6 N 1.46494 * 109.47085 * 185.00009 * 3 2 1 7 7 N 1.39929 * 125.75572 * 300.04132 * 6 3 2 8 8 C 1.30442 * 108.91947 * 179.67979 * 7 6 3 9 9 C 1.41318 * 108.02419 * 0.44666 * 8 7 6 10 10 C 1.47351 * 126.42259 * 179.81823 * 9 8 7 11 11 O 1.21633 * 120.00310 * 185.39299 * 10 9 8 12 12 N 1.34781 * 120.00198 * 5.11487 * 10 9 8 13 13 C 1.36975 * 120.00173 * 180.27874 * 12 10 9 14 14 H 1.07997 * 120.00231 * 359.97438 * 13 12 10 15 15 C 1.38975 * 119.99905 * 180.02562 * 13 12 10 16 16 N 1.31416 * 120.00277 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00034 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46899 * 90.00017 * 17 15 13 19 19 H 1.48504 * 109.47088 * 209.99710 * 17 15 13 20 20 H 1.48493 * 109.47142 * 329.99825 * 17 15 13 21 21 C 1.34286 * 125.74896 * 120.00847 * 6 3 2 22 22 C 1.50705 * 126.29912 * 0.02562 * 21 6 3 23 23 C 1.52993 * 117.49991 * 312.69571 * 22 21 6 24 24 C 1.52992 * 117.50084 * 244.06937 * 22 21 6 25 25 H 1.08999 * 109.46805 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47031 * 299.99890 * 1 2 3 27 27 H 1.09005 * 109.47181 * 59.99696 * 1 2 3 28 28 H 1.09003 * 109.46857 * 240.00579 * 2 1 3 29 29 H 1.08995 * 109.47270 * 120.00318 * 2 1 3 30 30 H 1.09000 * 109.47705 * 60.00118 * 5 3 2 31 31 H 1.09004 * 109.46941 * 179.97438 * 5 3 2 32 32 H 1.09002 * 109.47442 * 299.99998 * 5 3 2 33 33 H 1.07994 * 125.98922 * 180.30316 * 8 7 6 34 34 H 0.97001 * 119.99302 * 0.27811 * 12 10 9 35 35 H 0.97003 * 120.00274 * 179.97438 * 16 15 13 36 36 H 1.09001 * 115.54188 * 98.40396 * 22 21 6 37 37 H 1.08999 * 117.49773 * 0.02562 * 23 22 21 38 38 H 1.09003 * 117.49463 * 145.01562 * 23 22 21 39 39 H 1.08997 * 117.50018 * 214.97634 * 24 22 21 40 40 H 1.09002 * 117.49937 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1264 1.3074 6 7 3.5000 1.4442 -0.1204 7 7 4.3950 0.8484 0.7752 8 6 5.6123 1.0425 0.3487 9 6 5.5422 1.7900 -0.8486 10 6 6.6817 2.2374 -1.6687 11 8 6.4936 2.9605 -2.6285 12 7 7.9332 1.8501 -1.3519 13 6 8.9931 2.2707 -2.1109 14 1 8.8259 2.9123 -2.9633 15 6 10.2834 1.8708 -1.7846 16 7 10.4869 1.0896 -0.7476 17 14 11.7288 2.4438 -2.8200 18 1 12.2532 3.7214 -2.2740 19 1 12.7995 1.4152 -2.7877 20 1 11.2829 2.6503 -4.2213 21 6 4.2051 2.0174 -1.1092 22 6 3.6410 2.7701 -2.2867 23 6 2.4817 2.1245 -3.0482 24 6 3.8744 2.1810 -3.6792 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0699 1.5874 2.1492 31 1 1.9990 3.1540 1.3076 32 1 0.5489 2.1251 1.3970 33 1 6.5156 0.6951 0.8279 34 1 8.0833 1.2735 -0.5865 35 1 11.3875 0.8102 -0.5201 36 1 3.6396 3.8561 -2.1933 37 1 2.1267 1.1555 -2.6973 38 1 1.7172 2.7858 -3.4560 39 1 4.0260 2.8794 -4.5022 40 1 4.4355 1.2488 -3.7438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089854113.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:28 Heat of formation + Delta-G solvation = 31.889084 kcal Electronic energy + Delta-G solvation = -21780.450017 eV Core-core repulsion = 18596.507241 eV Total energy + Delta-G solvation = -3183.942776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.50462 -39.61440 -37.99836 -37.23522 -35.84689 -33.28488 -32.45298 -31.06231 -29.87211 -27.19863 -25.68572 -24.42282 -23.69076 -22.87626 -22.47731 -20.41442 -20.32513 -19.61569 -18.25192 -17.13847 -16.67396 -16.48968 -16.02392 -15.91651 -15.67052 -15.44211 -15.05213 -14.66166 -14.41965 -14.30036 -13.64566 -13.44971 -13.15354 -12.97335 -12.90119 -12.79603 -12.69760 -12.40086 -12.36042 -12.24119 -12.09209 -11.87766 -11.73380 -11.48525 -11.38236 -11.14389 -10.29448 -10.24145 -9.96938 -9.49312 -8.42801 -5.87889 0.61519 1.23089 1.39413 1.43788 1.48847 1.57122 2.33505 2.62007 2.77718 3.24161 3.39416 3.43139 3.57071 3.81162 3.89607 3.94254 3.99539 4.12468 4.23829 4.38701 4.46056 4.48605 4.53014 4.61607 4.70350 4.78936 4.93669 4.98881 5.02162 5.06181 5.09402 5.13755 5.21834 5.25319 5.42166 5.44072 5.51209 6.02621 6.06762 6.58591 6.68136 7.16726 7.63147 8.19019 8.75696 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.004430 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.116876 B = 6319.223053 C = 6960.956439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.142 3.858 4 H 0.126 0.874 5 C -0.157 4.157 6 N -0.344 5.344 7 N -0.305 5.305 8 C 0.065 3.935 9 C -0.292 4.292 10 C 0.517 3.483 11 O -0.619 6.619 12 N -0.569 5.569 13 C -0.327 4.327 14 H 0.083 0.917 15 C -0.016 4.016 16 N -0.923 5.923 17 Si 0.995 3.005 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.270 1.270 21 C 0.167 3.833 22 C -0.107 4.107 23 C -0.145 4.145 24 C -0.144 4.144 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.193 0.807 34 H 0.393 0.607 35 H 0.277 0.723 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.970 -1.036 1.734 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 C 0.043 3.957 4 H 0.144 0.856 5 C -0.214 4.214 6 N -0.125 5.125 7 N -0.125 5.125 8 C -0.121 4.121 9 C -0.306 4.306 10 C 0.306 3.694 11 O -0.507 6.507 12 N -0.205 5.205 13 C -0.457 4.457 14 H 0.101 0.899 15 C -0.216 4.216 16 N -0.564 5.564 17 Si 0.819 3.181 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.195 1.195 21 C 0.034 3.966 22 C -0.127 4.127 23 C -0.182 4.182 24 C -0.182 4.182 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.210 0.790 34 H 0.227 0.773 35 H 0.086 0.914 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.785 -1.187 2.152 21.924 hybrid contribution 2.192 0.171 -0.392 2.233 sum -19.594 -1.016 1.760 19.699 Atomic orbital electron populations 1.21789 0.91735 1.03223 1.03489 1.21822 0.98544 0.93748 1.02386 1.21992 0.72149 0.99502 1.02104 0.85630 1.22162 1.03932 0.99978 0.95347 1.48874 1.07404 1.39961 1.16211 1.76948 0.99046 1.21001 1.15505 1.24160 0.96625 0.96954 0.94391 1.20244 0.93479 1.14827 1.02090 1.17407 0.82519 0.83796 0.85724 1.90528 1.85454 1.42471 1.32236 1.41711 1.04853 1.45383 1.28532 1.19712 0.85936 1.29290 1.10722 0.89861 1.26081 1.00812 0.96547 0.98114 1.69691 1.23784 1.35305 1.27592 0.84894 0.76942 0.78076 0.78210 1.19668 1.19662 1.19512 1.20683 0.90142 0.94592 0.91222 1.20374 1.05055 0.98204 0.89059 1.23338 0.91221 1.02640 1.01003 1.22652 0.98975 1.01891 0.94663 0.91506 0.90878 0.90938 0.92672 0.91951 0.92514 0.92914 0.87157 0.79033 0.77333 0.91371 0.85744 0.88115 0.84499 0.87842 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.67 71.98 0.70 -0.82 16 2 C -0.13 -2.26 5.65 30.60 0.17 -2.09 16 3 C 0.14 2.89 2.60 44.99 0.12 3.01 16 4 H 0.13 2.06 5.60 -2.39 -0.01 2.05 16 5 C -0.16 -2.75 9.20 71.98 0.66 -2.09 16 6 N -0.34 -10.55 3.25 -312.55 -1.02 -11.56 16 7 N -0.30 -10.72 12.33 -56.26 -0.69 -11.41 16 8 C 0.07 2.53 11.50 85.66 0.99 3.51 16 9 C -0.29 -12.64 6.12 -20.15 -0.12 -12.76 16 10 C 0.52 27.08 7.76 86.64 0.67 27.75 16 11 O -0.62 -34.97 14.38 -4.13 -0.06 -35.03 16 12 N -0.57 -31.40 5.27 -310.03 -1.63 -33.04 16 13 C -0.33 -19.23 9.68 84.07 0.81 -18.41 16 14 H 0.08 5.13 7.15 -2.91 -0.02 5.11 16 15 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 16 N -0.92 -51.57 13.05 21.67 0.28 -51.29 16 17 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 C 0.17 5.98 6.45 42.16 0.27 6.25 16 22 C -0.11 -3.26 4.83 -11.54 -0.06 -3.31 16 23 C -0.15 -2.99 8.52 30.59 0.26 -2.73 16 24 C -0.14 -4.40 9.10 30.59 0.28 -4.12 16 25 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.61 6.56 -2.39 -0.02 0.59 16 27 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.16 6.56 -2.39 -0.02 1.14 16 33 H 0.19 6.93 7.52 -2.91 -0.02 6.90 16 34 H 0.39 20.88 6.87 -92.71 -0.64 20.25 16 35 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 37 H 0.10 1.90 7.41 -2.39 -0.02 1.88 16 38 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -71.54 333.17 4.54 -67.00 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.41 Total: 35.56 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 5.22 Total: -6.24 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -3.06 Total: -107.30 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.06 Total: -35.03 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.54 4.54 -67.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089854113.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.888 kcal (2) G-P(sol) polarization free energy of solvation -71.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds