Wall clock time and date at job start Mon Mar 30 2020 02:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46969 * 2 1 4 4 H 1.09007 * 109.47040 * 55.00585 * 3 2 1 5 5 C 1.52995 * 109.47406 * 295.00443 * 3 2 1 6 6 N 1.46505 * 109.46951 * 174.99832 * 3 2 1 7 7 N 1.39933 * 125.75090 * 60.02962 * 6 3 2 8 8 C 1.30442 * 108.91338 * 179.97438 * 7 6 3 9 9 C 1.41318 * 108.02950 * 359.97438 * 8 7 6 10 10 C 1.47352 * 126.42269 * 179.97438 * 9 8 7 11 11 O 1.21624 * 120.00541 * 185.40541 * 10 9 8 12 12 N 1.34780 * 119.99837 * 5.40280 * 10 9 8 13 13 C 1.36983 * 120.00065 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00109 * 0.02562 * 13 12 10 15 15 C 1.38978 * 119.99757 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00222 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99530 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47207 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47303 * 120.00087 * 17 15 13 20 20 H 1.48508 * 109.46875 * 239.99836 * 17 15 13 21 21 C 1.34282 * 125.75218 * 239.71783 * 6 3 2 22 22 C 1.50703 * 126.30178 * 359.97438 * 21 6 3 23 23 C 1.53007 * 117.49714 * 312.39925 * 22 21 6 24 24 C 1.52999 * 117.49955 * 243.77893 * 22 21 6 25 25 H 1.08991 * 109.47304 * 59.99876 * 1 2 3 26 26 H 1.08999 * 109.47097 * 299.99732 * 1 2 3 27 27 H 1.08999 * 109.46725 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47019 * 119.99753 * 2 1 3 29 29 H 1.08999 * 109.47097 * 240.00268 * 2 1 3 30 30 H 1.09005 * 109.46597 * 299.99548 * 5 3 2 31 31 H 1.08994 * 109.47623 * 59.99497 * 5 3 2 32 32 H 1.09002 * 109.47194 * 180.02562 * 5 3 2 33 33 H 1.08000 * 125.97775 * 180.02562 * 8 7 6 34 34 H 0.97002 * 120.00202 * 0.02562 * 12 10 9 35 35 H 0.97001 * 119.99301 * 180.02562 * 16 15 13 36 36 H 1.09001 * 115.54934 * 98.10029 * 22 21 6 37 37 H 1.08999 * 117.49946 * 359.97438 * 23 22 21 38 38 H 1.09003 * 117.50083 * 145.01637 * 23 22 21 39 39 H 1.09009 * 117.49543 * 214.97466 * 24 22 21 40 40 H 1.08994 * 117.50284 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1266 -1.3072 6 7 3.5001 1.4442 0.1204 7 7 4.3951 0.8495 -0.7759 8 6 5.6127 1.0497 -0.3530 9 6 5.5422 1.7916 0.8477 10 6 6.6818 2.2392 1.6677 11 8 6.4847 2.7887 2.7347 12 7 7.9427 2.0397 1.2353 13 6 9.0020 2.4562 1.9973 14 1 8.8270 2.9441 2.9447 15 6 10.3021 2.2509 1.5511 16 7 10.5152 1.6576 0.3980 17 14 11.7468 2.8183 2.5906 18 1 11.2423 3.4535 3.8345 19 1 12.5947 1.6501 2.9395 20 1 12.5518 3.8029 1.8239 21 6 4.2053 2.0218 1.1064 22 6 3.6416 2.7804 2.2803 23 6 2.5725 3.8362 1.9917 24 6 3.9851 4.2671 2.3915 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.0698 1.5876 -2.1491 31 1 0.5489 2.1253 -1.3969 32 1 1.9989 3.1541 -1.3074 33 1 6.5163 0.7088 -0.8364 34 1 8.1000 1.6018 0.3841 35 1 11.4227 1.5141 0.0869 36 1 3.5524 2.2137 3.2072 37 1 2.2772 3.9825 0.9527 38 1 1.7797 3.9643 2.7286 39 1 4.1216 4.6788 3.3916 40 1 4.6191 4.6966 1.6159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089854114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:33 Heat of formation + Delta-G solvation = 51.479204 kcal Electronic energy + Delta-G solvation = -21760.675147 eV Core-core repulsion = 18577.581862 eV Total energy + Delta-G solvation = -3183.093285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09601 -37.70344 -36.78421 -36.22251 -33.79264 -31.57795 -30.96015 -29.70745 -28.79260 -25.43816 -24.50218 -23.06122 -22.60382 -21.57015 -21.08694 -19.10361 -18.62760 -17.70692 -16.86227 -15.73140 -15.22069 -15.02962 -14.87343 -14.47954 -14.11561 -13.86834 -13.72878 -13.24328 -12.96307 -12.81364 -12.48521 -12.38041 -11.95967 -11.87480 -11.66563 -11.45354 -11.33697 -11.16876 -11.06946 -10.97745 -10.66382 -10.29489 -10.26492 -10.15814 -9.88666 -9.45854 -8.95143 -8.28524 -8.00519 -7.83780 -6.36047 -3.72054 2.06968 2.63734 2.84519 3.25720 3.30832 3.38084 3.94604 4.23527 4.38548 4.53427 4.65453 4.67920 4.85870 4.98683 5.04246 5.12760 5.21299 5.23403 5.30344 5.42108 5.47810 5.50590 5.59150 5.61675 5.70534 5.77250 5.80347 5.92481 6.04472 6.08151 6.17388 6.19547 6.27638 6.44042 6.68035 7.00945 7.30989 7.61205 8.04401 8.17237 8.72128 9.25894 9.66278 10.20208 10.82298 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.004424 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.772095 B = 6326.971988 C = 6977.697203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C 0.156 3.844 4 H 0.105 0.895 5 C -0.162 4.162 6 N -0.359 5.359 7 N -0.303 5.303 8 C 0.069 3.931 9 C -0.246 4.246 10 C 0.515 3.485 11 O -0.593 6.593 12 N -0.557 5.557 13 C -0.291 4.291 14 H 0.105 0.895 15 C 0.020 3.980 16 N -0.900 5.900 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.152 3.848 22 C -0.081 4.081 23 C -0.198 4.198 24 C -0.121 4.121 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.187 0.813 34 H 0.391 0.609 35 H 0.271 0.729 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.376 -0.308 -2.293 18.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.054 3.946 4 H 0.123 0.877 5 C -0.219 4.219 6 N -0.140 5.140 7 N -0.123 5.123 8 C -0.118 4.118 9 C -0.261 4.261 10 C 0.302 3.698 11 O -0.478 6.478 12 N -0.192 5.192 13 C -0.421 4.421 14 H 0.122 0.878 15 C -0.182 4.182 16 N -0.541 5.541 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.021 3.979 22 C -0.101 4.101 23 C -0.235 4.235 24 C -0.158 4.158 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.204 0.796 34 H 0.225 0.775 35 H 0.080 0.920 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.160 -0.523 -2.615 19.345 hybrid contribution 1.570 0.172 0.452 1.643 sum -17.590 -0.350 -2.162 17.726 Atomic orbital electron populations 1.21797 0.94664 1.02255 1.02089 1.21848 0.96158 0.95274 1.03686 1.21415 0.74939 0.97968 1.00257 0.87733 1.22172 1.01745 1.00978 0.97050 1.48432 1.05903 1.41751 1.17925 1.76985 0.99350 1.20896 1.15090 1.24085 0.95774 0.97239 0.94729 1.20457 0.93372 1.11770 1.00507 1.16836 0.81942 0.84597 0.86437 1.90575 1.85007 1.48402 1.23864 1.41698 1.03994 1.52453 1.21066 1.19766 0.83921 1.34970 1.03474 0.87761 1.25264 0.98851 0.97393 0.96642 1.69625 1.22266 1.42624 1.19628 0.85810 0.80624 0.78244 0.79725 1.19230 1.20819 1.20831 1.20372 0.90770 0.96114 0.90616 1.20238 1.02676 0.91689 0.95471 1.23214 0.93569 1.04570 1.02128 1.22709 0.95177 0.94605 1.03345 0.92149 0.92472 0.92155 0.91411 0.90510 0.91048 0.90732 0.92196 0.79640 0.77508 0.91957 0.85981 0.89217 0.88381 0.88086 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.13 -1.36 5.65 -26.73 -0.15 -1.52 16 3 C 0.16 1.80 2.60 -67.93 -0.18 1.63 16 4 H 0.10 1.08 5.64 -51.93 -0.29 0.79 16 5 C -0.16 -1.63 9.20 37.15 0.34 -1.29 16 6 N -0.36 -5.69 3.25 -50.14 -0.16 -5.85 16 7 N -0.30 -5.35 12.33 30.87 0.38 -4.97 16 8 C 0.07 1.29 11.50 -16.97 -0.20 1.10 16 9 C -0.25 -5.16 6.12 -105.07 -0.64 -5.81 16 10 C 0.52 12.85 7.76 -12.55 -0.10 12.75 16 11 O -0.59 -15.97 14.37 5.26 0.08 -15.89 16 12 N -0.56 -14.62 5.27 -11.97 -0.06 -14.68 16 13 C -0.29 -8.21 9.68 -14.98 -0.14 -8.36 16 14 H 0.10 3.05 7.15 -52.49 -0.38 2.68 16 15 C 0.02 0.54 5.50 -17.46 -0.10 0.44 16 16 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 17 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 C 0.15 2.73 6.45 -81.57 -0.53 2.21 16 22 C -0.08 -1.27 4.82 -91.77 -0.44 -1.72 16 23 C -0.20 -2.36 8.52 -26.73 -0.23 -2.59 16 24 C -0.12 -1.86 9.09 -26.73 -0.24 -2.11 16 25 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.19 3.19 7.53 -52.49 -0.40 2.80 16 34 H 0.39 9.87 6.88 -40.82 -0.28 9.59 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.12 1.90 8.14 -51.93 -0.42 1.47 16 37 H 0.09 1.03 7.45 -51.93 -0.39 0.64 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 1.49 8.14 -51.92 -0.42 1.07 16 40 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -31.68 333.23 -7.07 -38.74 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.77 Total: 11.50 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.24 Total: -6.01 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.88 Total: -49.53 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.68 -7.07 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089854114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.220 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds