Wall clock time and date at job start Mon Mar 30 2020 02:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21602 * 120.00339 * 359.97438 * 14 13 3 16 16 C 1.47430 * 119.99962 * 180.02562 * 14 13 3 17 17 C 1.41466 * 126.48822 * 359.68130 * 16 14 13 18 18 N 1.30605 * 108.07372 * 179.87362 * 17 16 14 19 19 N 1.39622 * 108.86935 * 0.37074 * 18 17 16 20 20 C 1.34599 * 108.34367 * 359.78768 * 19 18 17 21 21 C 1.50804 * 124.57866 * 179.97438 * 20 19 18 22 22 C 1.53457 * 108.19074 * 344.31027 * 21 20 19 23 23 C 1.53155 * 109.11211 * 48.36461 * 22 21 20 24 24 C 1.46688 * 127.22731 * 179.81050 * 19 18 17 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.08005 * 125.96072 * 0.03238 * 17 16 14 33 33 H 1.08996 * 109.71859 * 104.01407 * 21 20 19 34 34 H 1.09005 * 109.71766 * 224.66401 * 21 20 19 35 35 H 1.09001 * 109.54199 * 288.46646 * 22 21 20 36 36 H 1.09003 * 109.58075 * 168.28389 * 22 21 20 37 37 H 1.08999 * 109.46264 * 170.72659 * 23 22 21 38 38 H 1.09004 * 109.46209 * 50.77266 * 23 22 21 39 39 H 1.08996 * 109.57355 * 282.38280 * 24 19 18 40 40 H 1.09004 * 109.57540 * 42.63710 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4319 16 6 0.0448 3.3231 -2.6268 17 6 0.8368 3.4454 -3.7926 18 7 0.1397 4.0886 -4.6904 19 7 -1.1063 4.4106 -4.1490 20 6 -1.1552 3.9400 -2.8890 21 6 -2.3385 4.0869 -1.9658 22 6 -3.2656 5.1650 -2.5430 23 6 -3.4966 4.8835 -4.0307 24 6 -2.1994 5.1345 -4.8070 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 1.8416 3.0698 -3.9190 33 1 -2.8727 3.1392 -1.8990 34 1 -1.9971 4.3879 -0.9753 35 1 -2.8030 6.1449 -2.4250 36 1 -4.2197 5.1466 -2.0162 37 1 -4.2785 5.5426 -4.4078 38 1 -3.8030 3.8456 -4.1606 39 1 -1.9781 6.2017 -4.8147 40 1 -2.3101 4.7770 -5.8307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097140593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:21 Heat of formation + Delta-G solvation = 20.115386 kcal Electronic energy + Delta-G solvation = -21874.875329 eV Core-core repulsion = 18690.422008 eV Total energy + Delta-G solvation = -3184.453322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.50147 -38.50202 -36.60094 -34.92011 -32.46670 -32.23663 -30.87846 -30.36220 -28.42874 -26.70618 -24.38983 -23.34517 -22.36041 -21.90386 -20.14337 -19.15478 -18.86395 -17.48003 -16.13949 -15.90403 -15.17483 -14.89988 -14.68416 -14.56662 -14.41506 -14.11053 -13.94868 -13.72251 -12.95930 -12.67470 -12.47156 -12.08856 -11.81767 -11.47493 -11.42924 -11.27515 -11.19222 -11.14262 -10.90031 -10.77873 -10.58825 -10.23848 -10.09094 -9.54689 -9.23628 -8.97396 -8.87718 -8.43212 -8.37602 -7.64834 -6.06553 -4.15047 1.79123 2.38763 2.48802 3.27613 3.35599 3.38517 4.11804 4.22085 4.32109 4.39495 4.51870 4.54065 4.58760 4.96709 4.98664 5.16693 5.24842 5.25389 5.38741 5.49441 5.58084 5.71550 5.73505 5.96353 6.00299 6.24300 6.47344 6.55402 6.62024 6.75758 6.96813 7.14499 7.29112 7.46517 7.58690 7.70010 7.72593 7.85197 7.99938 8.26164 8.81450 8.88488 9.30365 9.53333 10.98863 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.004316 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.360392 B = 6486.331560 C = 6991.899550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.705 5.705 14 C 0.580 3.420 15 O -0.557 6.557 16 C -0.279 4.279 17 C 0.079 3.921 18 N -0.305 5.305 19 N -0.367 5.367 20 C 0.147 3.853 21 C -0.057 4.057 22 C -0.129 4.129 23 C -0.138 4.138 24 C 0.133 3.867 25 H 0.049 0.951 26 H 0.020 0.980 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.030 0.970 30 H 0.263 0.737 31 H 0.386 0.614 32 H 0.189 0.811 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.027 8.042 -12.041 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.351 5.351 14 C 0.366 3.634 15 O -0.437 6.437 16 C -0.294 4.294 17 C -0.108 4.108 18 N -0.124 5.124 19 N -0.149 5.149 20 C 0.016 3.984 21 C -0.096 4.096 22 C -0.167 4.167 23 C -0.176 4.176 24 C 0.012 3.988 25 H 0.068 0.932 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.218 0.782 32 H 0.206 0.794 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.637 8.453 -12.465 19.660 hybrid contribution 1.478 -0.389 0.399 1.580 sum -11.158 8.065 -12.066 18.307 Atomic orbital electron populations 1.21833 0.98379 0.97835 1.01314 1.21927 0.92643 0.99890 1.02143 1.18755 0.94050 0.89103 0.81054 0.93280 1.21298 0.90860 1.38640 1.06183 0.92056 1.24875 0.98473 0.94900 0.95441 1.69910 1.34927 1.37862 1.09334 0.86427 0.85085 0.77705 0.78079 1.19748 1.20958 1.20949 1.46270 1.14433 1.56077 1.18364 1.17130 0.82607 0.78282 0.85379 1.90699 1.51813 1.61101 1.40114 1.20269 0.95854 1.14964 0.98306 1.24142 0.99742 0.96406 0.90538 1.77031 0.91468 1.21285 1.22623 1.48488 1.12498 1.44002 1.09892 1.21354 0.96591 0.94213 0.86262 1.20537 0.90981 1.00179 0.97864 1.21761 1.00692 0.99393 0.94858 1.21985 0.95852 1.03712 0.96076 1.21826 0.83343 0.96359 0.97287 0.93171 0.96102 0.94120 0.88406 0.95121 0.92720 0.78200 0.79412 0.88813 0.87453 0.91223 0.90042 0.89078 0.90493 0.89858 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.90 2.24 -69.08 -0.15 6.75 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.81 11.29 55.43 0.63 -24.18 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.70 -15.02 5.01 -56.01 -0.28 -15.30 16 14 C 0.58 12.00 6.38 -12.52 -0.08 11.92 16 15 O -0.56 -12.82 12.56 5.28 0.07 -12.76 16 16 C -0.28 -4.86 6.12 -105.21 -0.64 -5.51 16 17 C 0.08 1.22 11.51 -16.84 -0.19 1.03 16 18 N -0.30 -4.70 12.54 30.93 0.39 -4.31 16 19 N -0.37 -5.01 4.01 -56.39 -0.23 -5.23 16 20 C 0.15 2.22 6.66 -81.61 -0.54 1.68 16 21 C -0.06 -0.71 5.37 -27.60 -0.15 -0.86 16 22 C -0.13 -1.09 5.98 -26.41 -0.16 -1.25 16 23 C -0.14 -0.97 5.93 -26.53 -0.16 -1.12 16 24 C 0.13 1.18 7.27 -3.82 -0.03 1.15 16 25 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 7.24 7.50 -40.82 -0.31 6.93 16 32 H 0.19 2.39 7.51 -52.48 -0.39 2.00 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.11 1.53 7.47 -51.93 -0.39 1.14 16 35 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.58 8.12 -51.93 -0.42 0.15 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -31.80 320.50 -7.78 -39.59 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.83 Total: 6.63 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.33 Total: -4.98 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.51 Total: -49.03 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.80 -7.78 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.704 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds