Wall clock time and date at job start Mon Mar 30 2020 02:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21602 * 120.00339 * 359.97438 * 14 13 3 16 16 C 1.47430 * 119.99962 * 180.02562 * 14 13 3 17 17 C 1.41466 * 126.48822 * 359.68130 * 16 14 13 18 18 N 1.30605 * 108.07372 * 179.87362 * 17 16 14 19 19 N 1.39622 * 108.86935 * 0.37074 * 18 17 16 20 20 C 1.34599 * 108.34367 * 359.78768 * 19 18 17 21 21 C 1.50804 * 124.57866 * 179.97438 * 20 19 18 22 22 C 1.53457 * 108.19074 * 344.31027 * 21 20 19 23 23 C 1.53155 * 109.11211 * 48.36461 * 22 21 20 24 24 C 1.46688 * 127.22731 * 179.81050 * 19 18 17 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 31 31 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 32 32 H 1.08005 * 125.96072 * 0.03238 * 17 16 14 33 33 H 1.08996 * 109.71859 * 104.01407 * 21 20 19 34 34 H 1.09005 * 109.71766 * 224.66401 * 21 20 19 35 35 H 1.09001 * 109.54199 * 288.46646 * 22 21 20 36 36 H 1.09003 * 109.58075 * 168.28389 * 22 21 20 37 37 H 1.08999 * 109.46264 * 170.72659 * 23 22 21 38 38 H 1.09004 * 109.46209 * 50.77266 * 23 22 21 39 39 H 1.08996 * 109.57355 * 282.38280 * 24 19 18 40 40 H 1.09004 * 109.57540 * 42.63710 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3417 2.6318 -0.4319 16 6 0.0448 3.3231 -2.6268 17 6 0.8368 3.4454 -3.7926 18 7 0.1397 4.0886 -4.6904 19 7 -1.1063 4.4106 -4.1490 20 6 -1.1552 3.9400 -2.8890 21 6 -2.3385 4.0869 -1.9658 22 6 -3.2656 5.1650 -2.5430 23 6 -3.4966 4.8835 -4.0307 24 6 -2.1994 5.1345 -4.8070 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0605 2.9501 31 1 2.2718 2.1232 -1.9978 32 1 1.8416 3.0698 -3.9190 33 1 -2.8727 3.1392 -1.8990 34 1 -1.9971 4.3879 -0.9753 35 1 -2.8030 6.1449 -2.4250 36 1 -4.2197 5.1466 -2.0162 37 1 -4.2785 5.5426 -4.4078 38 1 -3.8030 3.8456 -4.1606 39 1 -1.9781 6.2017 -4.8147 40 1 -2.3101 4.7770 -5.8307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097140593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:21 Heat of formation + Delta-G solvation = -0.728913 kcal Electronic energy + Delta-G solvation = -21875.779206 eV Core-core repulsion = 18690.422008 eV Total energy + Delta-G solvation = -3185.357199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.64520 -40.18546 -37.46163 -36.81558 -34.22406 -33.51361 -32.65903 -31.38964 -29.75781 -28.51418 -25.28767 -25.10265 -23.79166 -22.98329 -21.75384 -20.88915 -19.90494 -19.02565 -17.80552 -17.17169 -16.81709 -16.31364 -16.00730 -15.95892 -15.59111 -15.23691 -15.01804 -14.71070 -14.61679 -14.53947 -13.69573 -13.48285 -13.39890 -13.13681 -12.88596 -12.84126 -12.67302 -12.38736 -12.10375 -12.01697 -11.95254 -11.91359 -11.59870 -11.53762 -10.99112 -10.61015 -10.45728 -10.31410 -9.74541 -9.38336 -8.12464 -6.28939 0.57908 1.19878 1.40901 1.45862 1.47261 1.58946 2.40565 2.66906 2.80811 3.17203 3.44463 3.52919 3.76890 3.79378 3.98377 4.20584 4.30967 4.37852 4.46413 4.54725 4.62584 4.68090 4.70347 4.82285 4.84057 4.97566 5.05188 5.11832 5.15494 5.26338 5.31370 5.43782 5.50029 5.61835 5.70476 5.86125 5.93333 6.01040 6.22404 6.55799 6.79518 7.12821 7.38207 7.69744 8.93190 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030350 B = 0.004316 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.360392 B = 6486.331560 C = 6991.899550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.281 3.719 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.704 5.704 14 C 0.580 3.420 15 O -0.588 6.588 16 C -0.315 4.315 17 C 0.080 3.920 18 N -0.317 5.317 19 N -0.359 5.359 20 C 0.152 3.848 21 C -0.060 4.060 22 C -0.123 4.123 23 C -0.130 4.130 24 C 0.118 3.882 25 H 0.028 0.972 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.399 0.601 32 H 0.208 0.792 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 9.013 -14.212 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.351 5.351 14 C 0.368 3.632 15 O -0.470 6.470 16 C -0.329 4.329 17 C -0.107 4.107 18 N -0.136 5.136 19 N -0.139 5.139 20 C 0.018 3.982 21 C -0.098 4.098 22 C -0.160 4.160 23 C -0.168 4.168 24 C -0.001 4.001 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.233 0.767 32 H 0.225 0.775 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.148 0.852 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.240 9.451 -14.698 21.924 hybrid contribution 1.563 -0.626 1.048 1.983 sum -11.677 8.824 -13.651 20.014 Atomic orbital electron populations 1.21656 0.96939 0.98941 1.00313 1.21779 0.93842 0.99206 1.01119 1.18347 0.93524 0.89086 0.81246 0.98211 1.21624 0.91533 1.38697 1.06635 0.91206 1.25736 1.03157 0.94428 0.95037 1.70056 1.36879 1.38504 1.09846 0.85347 0.79342 0.77789 0.78144 1.18583 1.21023 1.20451 1.46026 1.15267 1.56346 1.17508 1.17552 0.81796 0.77617 0.86229 1.90674 1.52556 1.62215 1.41594 1.20063 0.97890 1.17364 0.97633 1.24419 1.00500 0.96107 0.89648 1.76987 0.92350 1.21458 1.22836 1.48922 1.12726 1.42949 1.09348 1.21680 0.96473 0.92864 0.87153 1.20603 0.91001 1.01682 0.96548 1.21761 1.00528 0.97644 0.96072 1.22017 0.95672 1.04538 0.94532 1.22376 0.82667 0.96925 0.98112 0.95278 0.93797 0.93934 0.90963 0.94342 0.92658 0.76669 0.77522 0.89032 0.89860 0.90967 0.87854 0.85243 0.90793 0.88086 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.51 71.98 0.61 -4.99 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.78 2.24 44.24 0.10 14.88 16 4 H 0.00 0.00 7.58 -2.38 -0.02 -0.02 16 5 C -0.55 -29.47 8.73 25.60 0.22 -29.24 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -52.74 11.29 21.45 0.24 -52.50 16 9 Si 0.97 42.65 29.54 68.60 2.03 44.67 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.70 -30.74 5.01 -449.36 -2.25 -32.99 16 14 C 0.58 24.72 6.38 86.66 0.55 25.27 16 15 O -0.59 -28.34 12.56 -4.04 -0.05 -28.39 16 16 C -0.31 -11.00 6.12 -20.25 -0.12 -11.12 16 17 C 0.08 2.42 11.51 85.67 0.99 3.41 16 18 N -0.32 -9.27 12.54 -56.07 -0.70 -9.98 16 19 N -0.36 -9.10 4.01 -332.32 -1.33 -10.44 16 20 C 0.15 4.49 6.66 41.98 0.28 4.77 16 21 C -0.06 -1.47 5.37 30.03 0.16 -1.31 16 22 C -0.12 -1.75 5.98 30.80 0.18 -1.56 16 23 C -0.13 -1.33 5.93 30.73 0.18 -1.15 16 24 C 0.12 1.71 7.27 86.42 0.63 2.34 16 25 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 26 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.92 5.64 -2.38 -0.01 1.91 16 28 H 0.07 4.05 5.95 -2.39 -0.01 4.03 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 31 H 0.40 15.08 7.50 -92.71 -0.70 14.38 16 32 H 0.21 5.07 7.51 -2.91 -0.02 5.05 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.08 2.46 7.47 -2.38 -0.02 2.45 16 35 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.07 0.86 8.12 -2.38 -0.02 0.84 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -70.99 320.50 2.68 -68.31 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.35 Total: 24.59 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.40 Total: -3.28 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -4.05 Total: -105.90 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.05 Total: -28.39 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -70.99 2.68 -68.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.582 kcal (2) G-P(sol) polarization free energy of solvation -70.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds