Wall clock time and date at job start Mon Mar 30 2020 02:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 N 1.46490 * 109.46791 * 179.97438 * 3 2 1 5 5 C 1.46508 * 120.00359 * 269.99995 * 4 3 2 6 6 C 1.53003 * 109.46823 * 270.00140 * 5 4 3 7 7 C 1.38470 * 120.00078 * 90.00299 * 4 3 2 8 8 C 1.39415 * 119.53623 * 184.99997 * 7 4 3 9 9 C 1.36845 * 119.38621 * 179.97438 * 8 7 4 10 10 C 1.40399 * 118.48988 * 359.97438 * 9 8 7 11 11 C 1.47435 * 120.48294 * 179.97438 * 10 9 8 12 12 O 1.21624 * 120.00045 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00211 * 180.02562 * 11 10 9 14 14 C 1.36912 * 120.00163 * 179.97438 * 13 11 10 15 15 H 1.07993 * 120.00034 * 0.02562 * 14 13 11 16 16 C 1.39021 * 119.99978 * 179.97438 * 14 13 11 17 17 N 1.31386 * 120.00143 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46853 * 60.00513 * 18 16 14 20 20 H 1.48501 * 109.47252 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47346 * 300.00721 * 18 16 14 22 22 C 1.39629 * 119.03534 * 0.02562 * 10 9 8 23 23 N 1.31663 * 120.51502 * 0.02562 * 22 10 9 24 24 H 1.09002 * 109.46770 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46887 * 300.00048 * 1 2 3 26 26 H 1.09000 * 109.47037 * 59.99779 * 1 2 3 27 27 H 1.08995 * 109.46887 * 239.99952 * 2 1 3 28 28 H 1.09001 * 109.46773 * 119.99488 * 2 1 3 29 29 H 1.08998 * 109.46589 * 59.99829 * 3 2 1 30 30 H 1.08996 * 109.46991 * 299.99827 * 3 2 1 31 31 H 1.08998 * 109.46719 * 30.00175 * 5 4 3 32 32 H 1.08999 * 109.47044 * 150.00356 * 5 4 3 33 33 H 1.09002 * 109.46750 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47501 * 299.99555 * 6 5 4 35 35 H 1.08999 * 109.47135 * 60.00271 * 6 5 4 36 36 H 1.08002 * 120.30353 * 0.24721 * 8 7 4 37 37 H 1.07998 * 120.75086 * 180.02562 * 9 8 7 38 38 H 0.97003 * 119.99857 * 359.97438 * 13 11 10 39 39 H 0.96995 * 119.99741 * 180.02562 * 17 16 14 40 40 H 1.08007 * 119.74557 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4427 1.2697 6 6 4.4918 2.8853 1.7112 7 6 4.1978 1.4424 -1.1983 8 6 5.5879 1.3367 -1.1887 9 6 6.2695 1.3363 -2.3753 10 6 5.5371 1.4428 -3.5684 11 6 6.2268 1.4475 -4.8715 12 8 7.4389 1.3591 -4.9183 13 7 5.5142 1.5507 -6.0107 14 6 6.1547 1.5555 -7.2208 15 1 7.2309 1.4762 -7.2624 16 6 5.4195 1.6615 -8.3959 17 7 4.1101 1.7575 -8.3453 18 14 6.2935 1.6688 -10.0469 19 1 7.0518 0.4025 -10.2111 20 1 5.2920 1.7914 -11.1366 21 1 7.2314 2.8186 -10.1054 22 6 4.1461 1.5454 -3.5028 23 7 3.5297 1.5429 -2.3394 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6476 0.9290 2.0291 32 1 5.1895 0.9289 1.1397 33 1 5.0361 2.8855 2.6556 34 1 5.0812 3.3991 0.9517 35 1 3.5394 3.3991 1.8411 36 1 6.1215 1.2514 -0.2536 37 1 7.3463 1.2551 -2.3936 38 1 4.5475 1.6216 -5.9733 39 1 3.5973 1.8310 -9.1653 40 1 3.5714 1.6283 -4.4135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101516802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:46 Heat of formation + Delta-G solvation = -3.401472 kcal Electronic energy + Delta-G solvation = -21060.443737 eV Core-core repulsion = 17874.970648 eV Total energy + Delta-G solvation = -3185.473089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.16963 -38.17690 -36.82906 -34.05814 -33.89372 -32.09678 -31.57336 -30.79874 -29.28409 -26.22498 -24.99833 -23.92275 -22.65141 -22.13239 -20.75621 -19.43344 -18.18175 -17.44110 -16.64715 -16.00055 -15.19035 -14.96180 -14.74489 -14.58489 -14.32741 -13.76628 -13.66556 -13.53618 -13.22626 -12.90136 -12.71627 -12.48011 -12.41393 -12.04443 -11.89518 -11.73406 -11.54362 -11.42357 -11.16495 -11.10108 -10.71752 -10.45956 -10.25510 -9.76166 -9.49705 -9.42262 -9.19607 -8.38733 -8.03343 -7.34178 -6.49399 -3.83515 1.45398 1.76571 2.95021 3.20414 3.24268 3.28764 3.85562 4.13930 4.57740 4.59571 4.81342 4.89188 4.96663 4.98355 5.11720 5.16567 5.17999 5.21092 5.34924 5.43630 5.50325 5.51326 5.56404 5.66322 5.67463 5.76320 5.92658 6.00634 6.06250 6.08592 6.15348 6.22666 6.39645 6.80628 6.87691 7.08362 7.48821 7.53594 8.01816 8.42540 8.56304 9.11899 9.48431 10.03341 10.67744 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.003824 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.925894 B = 7321.169926 C = 8215.273052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.129 3.871 4 N -0.609 5.609 5 C 0.121 3.879 6 C -0.173 4.173 7 C 0.399 3.601 8 C -0.245 4.245 9 C 0.006 3.994 10 C -0.205 4.205 11 C 0.480 3.520 12 O -0.601 6.601 13 N -0.547 5.547 14 C -0.296 4.296 15 H 0.106 0.894 16 C 0.023 3.977 17 N -0.893 5.893 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.163 3.837 23 N -0.541 5.541 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.393 0.607 39 H 0.275 0.725 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 -0.727 18.737 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.006 3.994 4 N -0.323 5.323 5 C -0.002 4.002 6 C -0.231 4.231 7 C 0.164 3.836 8 C -0.269 4.269 9 C -0.021 4.021 10 C -0.213 4.213 11 C 0.268 3.732 12 O -0.489 6.489 13 N -0.182 5.182 14 C -0.426 4.426 15 H 0.124 0.876 16 C -0.180 4.180 17 N -0.532 5.532 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C 0.004 3.996 23 N -0.257 5.257 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.227 0.773 39 H 0.085 0.915 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.493 -0.690 18.679 19.787 hybrid contribution 0.628 -0.019 -0.845 1.053 sum -5.865 -0.710 17.834 18.787 Atomic orbital electron populations 1.21683 0.95427 1.01675 1.01804 1.21907 0.95816 0.97855 1.02186 1.21391 0.78940 0.96374 1.02708 1.46287 1.05133 1.78808 1.02054 1.21425 0.97299 0.96989 0.84511 1.22237 1.02097 0.97368 1.01433 1.18374 0.88122 0.90846 0.86215 1.21069 0.93146 1.13417 0.99266 1.21101 1.00674 0.90084 0.90267 1.21007 0.94646 1.09848 0.95781 1.17468 0.87202 0.85386 0.83142 1.90586 1.13643 1.57614 1.87017 1.41850 1.09488 1.61907 1.04925 1.19756 0.94233 1.46585 0.81976 0.87587 1.25346 0.95511 0.96966 1.00139 1.69588 1.05189 1.48534 1.29938 0.85860 0.78640 0.79201 0.80228 1.19732 1.20840 1.19737 1.22730 0.91286 0.91148 0.94461 1.67153 1.40073 1.21217 0.97298 0.92765 0.92995 0.92297 0.91479 0.92598 0.91708 0.89382 0.90692 0.90377 0.91763 0.92101 0.92529 0.85318 0.84348 0.77278 0.91485 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.14 -1.41 6.26 -26.72 -0.17 -1.58 16 3 C 0.13 1.39 5.46 -4.04 -0.02 1.37 16 4 N -0.61 -7.29 2.57 -173.86 -0.45 -7.74 16 5 C 0.12 1.07 5.96 -4.04 -0.02 1.04 16 6 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 7 C 0.40 6.13 7.36 -155.25 -1.14 4.99 16 8 C -0.24 -3.68 9.20 -39.65 -0.36 -4.05 16 9 C 0.01 0.10 9.65 -39.27 -0.38 -0.28 16 10 C -0.20 -4.23 5.89 -104.82 -0.62 -4.85 16 11 C 0.48 12.12 7.72 -12.52 -0.10 12.02 16 12 O -0.60 -17.03 15.98 5.26 0.08 -16.95 16 13 N -0.55 -14.28 5.23 -11.95 -0.06 -14.35 16 14 C -0.30 -8.29 9.68 -14.99 -0.15 -8.44 16 15 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 16 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 17 N -0.89 -24.02 13.05 55.50 0.72 -23.30 16 18 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.16 3.06 10.71 -17.11 -0.18 2.88 16 23 N -0.54 -9.36 9.04 -12.11 -0.11 -9.47 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 30 H 0.09 1.11 7.28 -51.93 -0.38 0.73 16 31 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.08 0.66 5.94 -51.93 -0.31 0.35 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.13 1.54 5.98 -52.49 -0.31 1.23 16 37 H 0.14 2.45 7.73 -52.49 -0.41 2.04 16 38 H 0.39 9.69 5.94 -40.82 -0.24 9.45 16 39 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.16 2.89 6.41 -52.48 -0.34 2.56 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -31.44 336.32 -7.97 -39.41 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.72 Total: 9.81 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.49 Total: 1.70 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.10 Total: -54.85 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.08 Total: -16.95 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.44 -7.97 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101516802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.011 kcal (2) G-P(sol) polarization free energy of solvation -31.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds