Wall clock time and date at job start Mon Mar 30 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46902 * 2 1 4 4 N 1.46490 * 109.46791 * 179.97438 * 3 2 1 5 5 C 1.46508 * 120.00359 * 269.99995 * 4 3 2 6 6 C 1.53003 * 109.46823 * 270.00140 * 5 4 3 7 7 C 1.38470 * 120.00078 * 90.00299 * 4 3 2 8 8 C 1.39415 * 119.53623 * 184.99997 * 7 4 3 9 9 C 1.36845 * 119.38621 * 179.97438 * 8 7 4 10 10 C 1.40399 * 118.48988 * 359.97438 * 9 8 7 11 11 C 1.47435 * 120.48294 * 179.97438 * 10 9 8 12 12 O 1.21624 * 120.00045 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00211 * 180.02562 * 11 10 9 14 14 C 1.36912 * 120.00163 * 179.97438 * 13 11 10 15 15 H 1.07993 * 120.00034 * 0.02562 * 14 13 11 16 16 C 1.39021 * 119.99978 * 179.97438 * 14 13 11 17 17 N 1.31386 * 120.00143 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46853 * 60.00513 * 18 16 14 20 20 H 1.48501 * 109.47252 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47346 * 300.00721 * 18 16 14 22 22 C 1.39629 * 119.03534 * 0.02562 * 10 9 8 23 23 N 1.31663 * 120.51502 * 0.02562 * 22 10 9 24 24 H 1.09002 * 109.46770 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46887 * 300.00048 * 1 2 3 26 26 H 1.09000 * 109.47037 * 59.99779 * 1 2 3 27 27 H 1.08995 * 109.46887 * 239.99952 * 2 1 3 28 28 H 1.09001 * 109.46773 * 119.99488 * 2 1 3 29 29 H 1.08998 * 109.46589 * 59.99829 * 3 2 1 30 30 H 1.08996 * 109.46991 * 299.99827 * 3 2 1 31 31 H 1.08998 * 109.46719 * 30.00175 * 5 4 3 32 32 H 1.08999 * 109.47044 * 150.00356 * 5 4 3 33 33 H 1.09002 * 109.46750 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47501 * 299.99555 * 6 5 4 35 35 H 1.08999 * 109.47135 * 60.00271 * 6 5 4 36 36 H 1.08002 * 120.30353 * 0.24721 * 8 7 4 37 37 H 1.07998 * 120.75086 * 180.02562 * 9 8 7 38 38 H 0.97003 * 119.99857 * 359.97438 * 13 11 10 39 39 H 0.96995 * 119.99741 * 180.02562 * 17 16 14 40 40 H 1.08007 * 119.74557 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4427 1.2697 6 6 4.4918 2.8853 1.7112 7 6 4.1978 1.4424 -1.1983 8 6 5.5879 1.3367 -1.1887 9 6 6.2695 1.3363 -2.3753 10 6 5.5371 1.4428 -3.5684 11 6 6.2268 1.4475 -4.8715 12 8 7.4389 1.3591 -4.9183 13 7 5.5142 1.5507 -6.0107 14 6 6.1547 1.5555 -7.2208 15 1 7.2309 1.4762 -7.2624 16 6 5.4195 1.6615 -8.3959 17 7 4.1101 1.7575 -8.3453 18 14 6.2935 1.6688 -10.0469 19 1 7.0518 0.4025 -10.2111 20 1 5.2920 1.7914 -11.1366 21 1 7.2314 2.8186 -10.1054 22 6 4.1461 1.5454 -3.5028 23 7 3.5297 1.5429 -2.3394 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.6476 0.9290 2.0291 32 1 5.1895 0.9289 1.1397 33 1 5.0361 2.8855 2.6556 34 1 5.0812 3.3991 0.9517 35 1 3.5394 3.3991 1.8411 36 1 6.1215 1.2514 -0.2536 37 1 7.3463 1.2551 -2.3936 38 1 4.5475 1.6216 -5.9733 39 1 3.5973 1.8310 -9.1653 40 1 3.5714 1.6283 -4.4135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101516802.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:45 Heat of formation + Delta-G solvation = -22.228888 kcal Electronic energy + Delta-G solvation = -21061.260155 eV Core-core repulsion = 17874.970648 eV Total energy + Delta-G solvation = -3186.289507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.53998 -39.90876 -38.07356 -36.09080 -34.74444 -33.50280 -33.41959 -32.02437 -30.43895 -27.54563 -26.51654 -25.21074 -23.91024 -23.13774 -21.92718 -21.02948 -20.15346 -18.72554 -18.09214 -17.42521 -16.73411 -16.20072 -16.06897 -15.81176 -15.58816 -15.49738 -15.13249 -14.87590 -14.33750 -14.18135 -13.99072 -13.66916 -13.54821 -13.41259 -13.04008 -12.93980 -12.74541 -12.49327 -12.44105 -12.20525 -12.11726 -11.88499 -11.58687 -11.54172 -10.96308 -10.79131 -10.72344 -10.22192 -10.09100 -8.54605 -8.51839 -5.97220 -0.00310 0.38291 1.41991 1.43450 1.53911 1.93361 2.14793 2.28759 2.92647 3.17075 3.33972 3.45007 3.87619 4.03275 4.05731 4.12582 4.17196 4.22093 4.38556 4.41079 4.44651 4.56099 4.63357 4.73170 4.81190 4.90333 4.95347 4.99986 5.06485 5.20015 5.27237 5.31849 5.37353 5.40292 5.42435 5.54430 5.96335 6.06278 6.36401 6.52936 7.05279 7.09247 7.47073 8.03109 8.65464 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024407 B = 0.003824 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.925894 B = 7321.169926 C = 8215.273052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.124 3.876 4 N -0.599 5.599 5 C 0.112 3.888 6 C -0.168 4.168 7 C 0.405 3.595 8 C -0.231 4.231 9 C 0.003 3.997 10 C -0.240 4.240 11 C 0.481 3.519 12 O -0.640 6.640 13 N -0.557 5.557 14 C -0.338 4.338 15 H 0.084 0.916 16 C -0.010 4.010 17 N -0.914 5.914 18 Si 0.999 3.001 19 H -0.270 1.270 20 H -0.267 1.267 21 H -0.270 1.270 22 C 0.172 3.828 23 N -0.552 5.552 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.167 0.833 37 H 0.137 0.863 38 H 0.396 0.604 39 H 0.282 0.718 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.125 -0.806 21.422 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.002 3.998 4 N -0.310 5.310 5 C -0.010 4.010 6 C -0.226 4.226 7 C 0.168 3.832 8 C -0.255 4.255 9 C -0.023 4.023 10 C -0.249 4.249 11 C 0.271 3.729 12 O -0.530 6.530 13 N -0.192 5.192 14 C -0.468 4.468 15 H 0.102 0.898 16 C -0.211 4.211 17 N -0.553 5.553 18 Si 0.822 3.178 19 H -0.195 1.195 20 H -0.192 1.192 21 H -0.195 1.195 22 C 0.013 3.987 23 N -0.270 5.270 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.185 0.815 37 H 0.155 0.845 38 H 0.231 0.769 39 H 0.091 0.909 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.507 -0.768 21.434 22.724 hybrid contribution 0.816 0.001 -1.350 1.578 sum -6.691 -0.766 20.084 21.183 Atomic orbital electron populations 1.21660 0.94182 1.02154 1.02288 1.21827 0.96889 0.97002 1.01360 1.21542 0.78089 0.96972 1.03215 1.46706 1.05981 1.76413 1.01936 1.21793 0.97924 0.97974 0.83309 1.22194 1.02141 0.96377 1.01934 1.18771 0.88741 0.88813 0.86863 1.21334 0.93037 1.11608 0.99558 1.21179 1.00720 0.89967 0.90434 1.20667 0.95412 1.14544 0.94270 1.18179 0.86899 0.83392 0.84454 1.90529 1.15457 1.59070 1.87968 1.41851 1.09603 1.62836 1.04906 1.19752 0.93672 1.49735 0.83591 0.89800 1.26170 0.96246 0.95677 1.03018 1.69654 1.06106 1.48434 1.31140 0.84906 0.77815 0.79131 0.75986 1.19463 1.19180 1.19474 1.22592 0.90471 0.90456 0.95175 1.67231 1.40015 1.22326 0.97424 0.92341 0.91047 0.93281 0.94534 0.91096 0.88615 0.91497 0.87821 0.89571 0.89380 0.94096 0.92466 0.81523 0.84495 0.76875 0.90881 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 71.99 0.71 -1.44 16 2 C -0.13 -2.36 6.26 30.60 0.19 -2.17 16 3 C 0.12 2.33 5.46 86.38 0.47 2.80 16 4 N -0.60 -12.48 2.57 -703.96 -1.81 -14.29 16 5 C 0.11 1.46 5.96 86.38 0.51 1.98 16 6 C -0.17 -2.07 10.24 71.98 0.74 -1.34 16 7 C 0.40 11.72 7.36 133.25 0.98 12.70 16 8 C -0.23 -6.50 9.20 22.23 0.20 -6.29 16 9 C 0.00 0.12 9.65 22.47 0.22 0.34 16 10 C -0.24 -10.28 5.89 -19.99 -0.12 -10.40 16 11 C 0.48 25.60 7.72 86.67 0.67 26.27 16 12 O -0.64 -38.20 15.98 -4.11 -0.07 -38.27 16 13 N -0.56 -30.69 5.23 -309.98 -1.62 -32.31 16 14 C -0.34 -19.88 9.68 84.09 0.81 -19.06 16 15 H 0.08 5.19 7.15 -2.91 -0.02 5.17 16 16 C -0.01 -0.56 5.50 84.95 0.47 -0.09 16 17 N -0.91 -50.04 13.05 21.68 0.28 -49.76 16 18 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 C 0.17 6.68 10.71 85.05 0.91 7.59 16 23 N -0.55 -18.95 9.04 -192.24 -1.74 -20.69 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.26 8.07 -2.39 -0.02 1.24 16 30 H 0.07 1.59 7.28 -2.39 -0.02 1.57 16 31 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 32 H 0.09 1.04 5.94 -2.39 -0.01 1.03 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.17 3.36 5.98 -2.91 -0.02 3.34 16 37 H 0.14 4.91 7.73 -2.91 -0.02 4.89 16 38 H 0.40 20.68 5.94 -92.71 -0.55 20.13 16 39 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.15 5.93 6.41 -2.91 -0.02 5.91 16 Total: -1.00 -71.17 336.32 4.34 -66.83 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: 0.49 Total: 32.34 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 6.77 Total: 10.89 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -4.89 Total: -117.06 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.07 Total: -38.27 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -71.17 4.34 -66.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101516802.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.597 kcal (2) G-P(sol) polarization free energy of solvation -71.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds