Wall clock time and date at job start Mon Mar 30 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 N 1.46912 * 109.46710 * 119.99445 * 2 1 3 5 5 C 1.46900 * 110.99496 * 73.55102 * 4 2 1 6 6 C 1.50695 * 109.47600 * 66.04820 * 5 4 2 7 7 O 1.21296 * 119.99949 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00540 * 180.02562 * 6 5 4 9 9 C 1.37091 * 120.00404 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99862 * 359.97438 * 9 8 6 11 11 C 1.38955 * 120.00044 * 179.97438 * 9 8 6 12 12 N 1.31414 * 120.00043 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99956 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47319 * 90.00241 * 13 11 9 15 15 H 1.48503 * 109.47111 * 210.00524 * 13 11 9 16 16 H 1.48508 * 109.47128 * 330.00091 * 13 11 9 17 17 C 1.46896 * 110.99949 * 309.59717 * 4 2 1 18 18 C 1.50707 * 109.46795 * 199.89004 * 17 4 2 19 19 C 1.38664 * 120.41624 * 264.57058 * 18 17 4 20 20 C 1.38633 * 118.42306 * 180.24516 * 19 18 17 21 21 C 1.38234 * 119.15486 * 359.74939 * 20 19 18 22 22 N 1.31852 * 120.76433 * 0.02562 * 21 20 19 23 23 C 1.31885 * 121.72559 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47284 * 300.00800 * 1 2 3 25 25 H 1.09008 * 109.46521 * 60.00584 * 1 2 3 26 26 H 1.08992 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47782 * 239.99202 * 2 1 3 28 28 H 1.09007 * 109.46623 * 174.52014 * 3 2 1 29 29 H 1.08993 * 109.46968 * 294.51174 * 3 2 1 30 30 H 1.09002 * 109.47531 * 54.52040 * 3 2 1 31 31 H 1.09003 * 109.46773 * 186.04520 * 5 4 2 32 32 H 1.08995 * 109.47161 * 306.04249 * 5 4 2 33 33 H 0.97007 * 119.99382 * 359.97438 * 8 6 5 34 34 H 0.97001 * 119.99803 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47401 * 79.88907 * 17 4 2 36 36 H 1.09004 * 109.47101 * 319.88731 * 17 4 2 37 37 H 1.08005 * 120.79441 * 359.97021 * 19 18 17 38 38 H 1.07994 * 120.42643 * 179.72825 * 20 19 18 39 39 H 1.07995 * 119.61199 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.61385 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.8289 -2.1444 1.0839 6 6 2.7031 -2.6796 -0.0207 7 8 3.4147 -1.9255 -0.6502 8 7 2.6935 -3.9958 -0.3101 9 6 3.4884 -4.4826 -1.3154 10 1 4.1220 -3.8111 -1.8758 11 6 3.4788 -5.8398 -1.6133 12 7 2.7074 -6.6567 -0.9317 13 14 4.5625 -6.5031 -2.9826 14 1 5.8841 -6.8881 -2.4256 15 1 3.9166 -7.6931 -3.5926 16 1 4.7481 -5.4553 -4.0185 17 6 1.3709 -0.1710 2.4101 18 6 2.2038 -0.5204 3.6165 19 6 1.9166 -1.6526 4.3638 20 6 2.7063 -1.9320 5.4684 21 6 3.7496 -1.0814 5.7829 22 7 3.9963 -0.0158 5.0466 23 6 3.2660 0.2808 3.9892 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1256 1.4440 0.0981 29 1 1.7591 1.9271 -0.9350 30 1 1.5988 1.9840 0.8368 31 1 2.0996 -2.6225 2.0254 32 1 0.7844 -2.3566 0.8558 33 1 2.1240 -4.5988 0.1931 34 1 2.7005 -7.6041 -1.1399 35 1 0.3805 -0.6147 2.5114 36 1 1.2777 0.9124 2.3343 37 1 1.0944 -2.2992 4.0943 38 1 2.5087 -2.8028 6.0758 39 1 4.3697 -1.2922 6.6415 40 1 3.4982 1.1626 3.4105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125702559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:29 Heat of formation + Delta-G solvation = 4.103345 kcal Electronic energy + Delta-G solvation = -21707.604434 eV Core-core repulsion = 18522.456778 eV Total energy + Delta-G solvation = -3185.147656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.24136 -38.87481 -37.09421 -33.88566 -33.21057 -31.82356 -31.32910 -30.75155 -27.65374 -26.93405 -25.34330 -23.91251 -23.40997 -21.99253 -19.91607 -18.86242 -17.81069 -17.02125 -16.34608 -16.06340 -15.91076 -15.14239 -14.67895 -14.44268 -14.04331 -13.83985 -13.62217 -13.38777 -13.11756 -12.98788 -12.93760 -12.72723 -12.12853 -11.84121 -11.72403 -11.51188 -11.44147 -11.10719 -11.01702 -10.76494 -10.41906 -10.37250 -10.21064 -9.73097 -9.44908 -9.40758 -8.92259 -8.38606 -7.96254 -7.84466 -6.40945 -3.81440 1.17159 1.33934 3.18367 3.26857 3.32545 3.76631 3.92459 4.12698 4.29668 4.51113 4.80040 4.83582 5.00970 5.05441 5.08386 5.19275 5.25506 5.33879 5.37170 5.54552 5.60966 5.67656 5.72982 5.81071 5.84551 5.91308 5.98366 6.04391 6.14675 6.21411 6.26257 6.32457 6.52745 6.60348 6.76162 7.32666 7.42304 7.56039 8.04451 8.07499 8.62917 9.19280 9.55638 10.07614 10.76929 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.004985 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.897683 B = 5615.712347 C = 6632.828506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.071 3.929 3 C -0.136 4.136 4 N -0.502 5.502 5 C 0.042 3.958 6 C 0.445 3.555 7 O -0.575 6.575 8 N -0.565 5.565 9 C -0.297 4.297 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.929 3.071 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.092 3.908 18 C -0.120 4.120 19 C -0.072 4.072 20 C -0.173 4.173 21 C 0.091 3.909 22 N -0.488 5.488 23 C 0.120 3.880 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.391 0.609 34 H 0.271 0.729 35 H 0.045 0.955 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 10.231 10.143 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.037 4.037 3 C -0.193 4.193 4 N -0.226 5.226 5 C -0.089 4.089 6 C 0.231 3.769 7 O -0.459 6.459 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.544 5.544 13 Si 0.756 3.244 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.036 4.036 18 C -0.123 4.123 19 C -0.099 4.099 20 C -0.193 4.193 21 C -0.066 4.066 22 N -0.196 5.196 23 C -0.037 4.037 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.224 0.776 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.608 11.174 9.945 15.653 hybrid contribution -1.446 -1.778 -0.576 2.363 sum -6.054 9.396 9.369 14.585 Atomic orbital electron populations 1.22539 0.98435 1.01746 1.01805 1.21908 0.91384 0.95650 0.94726 1.21767 1.02322 0.94787 1.00455 1.61809 1.56999 1.02731 1.01013 1.21909 0.98220 0.88934 0.99862 1.19715 0.86994 0.83213 0.87022 1.90496 1.44495 1.56942 1.53991 1.41863 1.39554 1.06151 1.32629 1.19690 1.20004 0.92201 1.10789 0.87943 1.25246 0.97883 0.95900 0.98905 1.69613 1.39075 1.04632 1.41129 0.85872 0.79533 0.78332 0.80643 1.20417 1.20964 1.19427 1.21029 0.93943 1.00812 0.87805 1.20840 0.98261 0.96093 0.97083 1.21535 0.98857 0.95573 0.93931 1.22098 0.97354 1.01225 0.98618 1.22708 0.95287 0.90388 0.98238 1.67689 1.27948 1.18149 1.05852 1.22597 0.90028 0.98801 0.92303 0.92892 0.92204 0.92745 0.87212 0.91507 0.92716 0.93616 0.89710 0.93314 0.77607 0.91928 0.93708 0.89395 0.85139 0.84978 0.83128 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 8.48 37.16 0.32 -2.04 16 2 C 0.07 1.10 2.50 -67.71 -0.17 0.93 16 3 C -0.14 -1.78 9.12 37.16 0.34 -1.44 16 4 N -0.50 -8.02 4.08 -229.51 -0.94 -8.96 16 5 C 0.04 0.75 5.17 -4.98 -0.03 0.72 16 6 C 0.45 10.46 7.37 -10.99 -0.08 10.38 16 7 O -0.58 -15.35 14.02 5.54 0.08 -15.27 16 8 N -0.57 -14.33 5.29 -10.96 -0.06 -14.38 16 9 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 12 N -0.90 -24.59 13.05 55.50 0.72 -23.86 16 13 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 C 0.09 1.15 3.67 -4.97 -0.02 1.13 16 18 C -0.12 -1.57 5.05 -104.48 -0.53 -2.09 16 19 C -0.07 -0.87 8.58 -39.28 -0.34 -1.21 16 20 C -0.17 -1.95 10.11 -39.44 -0.40 -2.35 16 21 C 0.09 1.11 11.18 -17.54 -0.20 0.91 16 22 N -0.49 -7.01 10.36 -13.25 -0.14 -7.14 16 23 C 0.12 1.65 10.88 -17.55 -0.19 1.46 16 24 H 0.05 0.57 6.65 -51.93 -0.35 0.23 16 25 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.05 0.73 6.73 -51.93 -0.35 0.38 16 27 H 0.11 2.14 5.79 -51.93 -0.30 1.84 16 28 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.50 6.61 -51.93 -0.34 0.16 16 31 H 0.08 1.43 6.36 -51.93 -0.33 1.10 16 32 H 0.05 0.79 6.59 -51.93 -0.34 0.45 16 33 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.04 0.51 7.27 -51.93 -0.38 0.13 16 36 H 0.09 0.97 6.01 -51.93 -0.31 0.66 16 37 H 0.13 1.35 8.01 -52.48 -0.42 0.93 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -31.62 326.94 -7.45 -39.07 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.49 Total: 11.06 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.53 Total: -1.56 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.41 Total: -54.35 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.08 Total: -15.27 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.62 -7.45 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125702559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.171 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds