Wall clock time and date at job start Mon Mar 30 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 N 1.46912 * 109.46710 * 119.99445 * 2 1 3 5 5 C 1.46900 * 110.99496 * 73.55102 * 4 2 1 6 6 C 1.50695 * 109.47600 * 66.04820 * 5 4 2 7 7 O 1.21296 * 119.99949 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00540 * 180.02562 * 6 5 4 9 9 C 1.37091 * 120.00404 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99862 * 359.97438 * 9 8 6 11 11 C 1.38955 * 120.00044 * 179.97438 * 9 8 6 12 12 N 1.31414 * 120.00043 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99956 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47319 * 90.00241 * 13 11 9 15 15 H 1.48503 * 109.47111 * 210.00524 * 13 11 9 16 16 H 1.48508 * 109.47128 * 330.00091 * 13 11 9 17 17 C 1.46896 * 110.99949 * 309.59717 * 4 2 1 18 18 C 1.50707 * 109.46795 * 199.89004 * 17 4 2 19 19 C 1.38664 * 120.41624 * 264.57058 * 18 17 4 20 20 C 1.38633 * 118.42306 * 180.24516 * 19 18 17 21 21 C 1.38234 * 119.15486 * 359.74939 * 20 19 18 22 22 N 1.31852 * 120.76433 * 0.02562 * 21 20 19 23 23 C 1.31885 * 121.72559 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47284 * 300.00800 * 1 2 3 25 25 H 1.09008 * 109.46521 * 60.00584 * 1 2 3 26 26 H 1.08992 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47782 * 239.99202 * 2 1 3 28 28 H 1.09007 * 109.46623 * 174.52014 * 3 2 1 29 29 H 1.08993 * 109.46968 * 294.51174 * 3 2 1 30 30 H 1.09002 * 109.47531 * 54.52040 * 3 2 1 31 31 H 1.09003 * 109.46773 * 186.04520 * 5 4 2 32 32 H 1.08995 * 109.47161 * 306.04249 * 5 4 2 33 33 H 0.97007 * 119.99382 * 359.97438 * 8 6 5 34 34 H 0.97001 * 119.99803 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47401 * 79.88907 * 17 4 2 36 36 H 1.09004 * 109.47101 * 319.88731 * 17 4 2 37 37 H 1.08005 * 120.79441 * 359.97021 * 19 18 17 38 38 H 1.07994 * 120.42643 * 179.72825 * 20 19 18 39 39 H 1.07995 * 119.61199 * 180.02562 * 21 20 19 40 40 H 1.07999 * 119.61385 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.8289 -2.1444 1.0839 6 6 2.7031 -2.6796 -0.0207 7 8 3.4147 -1.9255 -0.6502 8 7 2.6935 -3.9958 -0.3101 9 6 3.4884 -4.4826 -1.3154 10 1 4.1220 -3.8111 -1.8758 11 6 3.4788 -5.8398 -1.6133 12 7 2.7074 -6.6567 -0.9317 13 14 4.5625 -6.5031 -2.9826 14 1 5.8841 -6.8881 -2.4256 15 1 3.9166 -7.6931 -3.5926 16 1 4.7481 -5.4553 -4.0185 17 6 1.3709 -0.1710 2.4101 18 6 2.2038 -0.5204 3.6165 19 6 1.9166 -1.6526 4.3638 20 6 2.7063 -1.9320 5.4684 21 6 3.7496 -1.0814 5.7829 22 7 3.9963 -0.0158 5.0466 23 6 3.2660 0.2808 3.9892 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1256 1.4440 0.0981 29 1 1.7591 1.9271 -0.9350 30 1 1.5988 1.9840 0.8368 31 1 2.0996 -2.6225 2.0254 32 1 0.7844 -2.3566 0.8558 33 1 2.1240 -4.5988 0.1931 34 1 2.7005 -7.6041 -1.1399 35 1 0.3805 -0.6147 2.5114 36 1 1.2777 0.9124 2.3343 37 1 1.0944 -2.2992 4.0943 38 1 2.5087 -2.8028 6.0758 39 1 4.3697 -1.2922 6.6415 40 1 3.4982 1.1626 3.4105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125702559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:29 Heat of formation + Delta-G solvation = -17.907658 kcal Electronic energy + Delta-G solvation = -21708.558903 eV Core-core repulsion = 18522.456778 eV Total energy + Delta-G solvation = -3186.102125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26895 -40.37027 -38.62158 -35.89787 -34.23079 -33.29188 -32.75332 -32.05237 -28.95961 -27.98614 -26.92594 -25.39176 -24.39945 -22.98207 -21.46590 -20.42410 -19.72451 -17.95005 -17.77915 -17.34763 -17.01111 -16.51963 -16.51140 -15.79413 -15.47991 -15.26518 -14.96888 -14.63072 -14.32372 -14.04981 -13.96497 -13.81844 -13.62013 -13.38090 -13.13880 -12.88509 -12.73157 -12.51869 -12.41720 -12.13899 -12.10017 -11.91718 -11.68466 -11.34531 -10.68269 -10.40047 -10.20870 -9.98689 -9.85627 -9.11050 -8.46237 -5.94377 0.23331 0.40777 1.37126 1.40676 1.53141 2.07014 2.28439 2.71134 3.07896 3.20785 3.39347 3.62947 3.89296 3.96574 4.07491 4.15574 4.16120 4.25789 4.27653 4.40379 4.48778 4.54403 4.58676 4.65910 4.79348 4.83737 4.89842 4.94168 5.01712 5.16947 5.24879 5.30880 5.40381 5.41385 5.49203 5.85181 5.93436 6.15426 6.29288 6.61722 7.09843 7.14097 7.57630 8.14053 8.71303 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.004985 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.897683 B = 5615.712347 C = 6632.828506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.069 3.931 3 C -0.129 4.129 4 N -0.521 5.521 5 C 0.058 3.942 6 C 0.442 3.558 7 O -0.612 6.612 8 N -0.576 5.576 9 C -0.330 4.330 10 H 0.077 0.923 11 C -0.012 4.012 12 N -0.921 5.921 13 Si 0.990 3.010 14 H -0.273 1.273 15 H -0.270 1.270 16 H -0.273 1.273 17 C 0.098 3.902 18 C -0.130 4.130 19 C -0.081 4.081 20 C -0.172 4.172 21 C 0.079 3.921 22 N -0.516 5.516 23 C 0.101 3.899 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.395 0.605 34 H 0.277 0.723 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.149 0.851 38 H 0.161 0.839 39 H 0.175 0.825 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 10.131 11.219 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.039 4.039 3 C -0.186 4.186 4 N -0.245 5.245 5 C -0.074 4.074 6 C 0.229 3.771 7 O -0.498 6.498 8 N -0.213 5.213 9 C -0.460 4.460 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.562 5.562 13 Si 0.814 3.186 14 H -0.198 1.198 15 H -0.194 1.194 16 H -0.198 1.198 17 C -0.029 4.029 18 C -0.133 4.133 19 C -0.107 4.107 20 C -0.191 4.191 21 C -0.078 4.078 22 N -0.225 5.225 23 C -0.056 4.056 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.167 0.833 38 H 0.178 0.822 39 H 0.192 0.808 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.886 11.080 11.041 16.712 hybrid contribution -1.037 -1.706 -0.854 2.171 sum -6.923 9.374 10.187 15.478 Atomic orbital electron populations 1.22440 0.95934 1.01696 1.03529 1.21801 0.93355 0.96046 0.92695 1.21707 1.00874 0.93812 1.02239 1.61738 1.58639 1.01540 1.02535 1.21717 0.97681 0.90341 0.97613 1.20781 0.86570 0.82302 0.87408 1.90474 1.46071 1.57698 1.55510 1.41930 1.39775 1.07025 1.32619 1.19624 1.21344 0.92703 1.12338 0.90509 1.25991 0.98832 0.95550 1.00806 1.69669 1.39584 1.05028 1.41928 0.84966 0.78026 0.77778 0.77803 1.19825 1.19437 1.19815 1.21083 0.94294 1.01800 0.85751 1.20924 0.98303 0.96539 0.97487 1.21870 0.99449 0.95421 0.93989 1.22441 0.96488 1.01686 0.98499 1.23204 0.95944 0.89964 0.98659 1.67678 1.28799 1.19465 1.06601 1.22763 0.90645 0.99493 0.92654 0.90279 0.91348 0.93636 0.92156 0.93853 0.91671 0.90819 0.88511 0.91263 0.77183 0.91357 0.91737 0.87698 0.83287 0.82185 0.80821 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.08 8.48 71.98 0.61 -3.47 16 2 C 0.07 2.08 2.50 44.91 0.11 2.20 16 3 C -0.13 -3.25 9.12 71.98 0.66 -2.60 16 4 N -0.52 -16.10 4.08 -880.05 -3.59 -19.69 16 5 C 0.06 2.00 5.17 85.56 0.44 2.44 16 6 C 0.44 21.25 7.37 87.66 0.65 21.89 16 7 O -0.61 -34.00 14.02 -3.08 -0.04 -34.05 16 8 N -0.58 -29.86 5.29 -306.99 -1.62 -31.48 16 9 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 10 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 11 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 12 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 13 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 C 0.10 2.19 3.67 85.56 0.31 2.50 16 18 C -0.13 -3.15 5.05 -19.77 -0.10 -3.25 16 19 C -0.08 -1.75 8.58 22.47 0.19 -1.56 16 20 C -0.17 -3.46 10.11 22.36 0.23 -3.23 16 21 C 0.08 1.80 11.18 84.69 0.95 2.75 16 22 N -0.52 -14.47 10.36 -195.85 -2.03 -16.49 16 23 C 0.10 2.71 10.88 84.67 0.92 3.63 16 24 H 0.08 1.41 6.65 -2.39 -0.02 1.40 16 25 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.04 1.12 6.73 -2.39 -0.02 1.11 16 27 H 0.06 2.44 5.79 -2.39 -0.01 2.42 16 28 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.43 6.61 -2.39 -0.02 1.41 16 31 H 0.10 3.13 6.36 -2.39 -0.02 3.11 16 32 H 0.07 2.12 6.59 -2.39 -0.02 2.11 16 33 H 0.39 19.44 7.90 -92.70 -0.73 18.71 16 34 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.06 1.22 7.27 -2.39 -0.02 1.20 16 36 H 0.10 1.98 6.01 -2.38 -0.01 1.96 16 37 H 0.15 2.60 8.01 -2.91 -0.02 2.58 16 38 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -70.21 326.94 1.59 -68.62 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.32 Total: 34.33 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.25 Total: 2.96 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -6.96 Total: -117.28 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.04 Total: -34.05 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -70.21 1.59 -68.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125702559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.708 kcal (2) G-P(sol) polarization free energy of solvation -70.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds