Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47200 * 2 1 4 4 N 1.46497 * 109.46928 * 179.97438 * 3 2 1 5 5 C 1.36712 * 120.00169 * 85.51382 * 4 3 2 6 6 H 1.07999 * 120.00260 * 226.13278 * 5 4 3 7 7 C 1.39110 * 120.00015 * 46.13027 * 5 4 3 8 8 N 1.31333 * 120.00030 * 356.48313 * 7 5 4 9 9 Si 1.86802 * 120.00221 * 176.48492 * 7 5 4 10 10 H 1.48501 * 109.46837 * 89.99817 * 9 7 5 11 11 H 1.48492 * 109.47260 * 209.99749 * 9 7 5 12 12 H 1.48503 * 109.46932 * 330.00180 * 9 7 5 13 13 C 1.34777 * 120.00103 * 265.23489 * 4 3 2 14 14 O 1.21796 * 119.99924 * 4.47072 * 13 4 3 15 15 C 1.41666 * 120.00198 * 184.47748 * 13 4 3 16 16 C 1.35419 * 119.99924 * 185.24088 * 15 13 4 17 17 C 1.46354 * 119.99927 * 185.14154 * 16 15 13 18 18 C 1.38464 * 126.52173 * 5.14597 * 17 16 15 19 19 C 1.39156 * 107.63770 * 180.02562 * 18 17 16 20 20 N 1.30997 * 108.84524 * 0.02562 * 19 18 17 21 21 N 1.36831 * 126.52119 * 184.83989 * 17 16 15 22 22 C 1.46502 * 126.15671 * 359.95920 * 21 17 16 23 23 C 1.53003 * 109.46795 * 94.97894 * 22 21 17 24 24 H 1.09000 * 109.47749 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47659 * 299.99947 * 1 2 3 26 26 H 1.09006 * 109.47153 * 60.00054 * 1 2 3 27 27 H 1.08996 * 109.47659 * 240.00052 * 2 1 3 28 28 H 1.09006 * 109.47153 * 119.99946 * 2 1 3 29 29 H 1.09001 * 109.47215 * 60.00073 * 3 2 1 30 30 H 1.08998 * 109.46769 * 299.99800 * 3 2 1 31 31 H 0.96998 * 119.99880 * 180.02562 * 8 7 5 32 32 H 1.08001 * 119.99788 * 5.22928 * 15 13 4 33 33 H 1.08000 * 120.00012 * 5.13632 * 16 15 13 34 34 H 1.08004 * 126.17836 * 0.02562 * 18 17 16 35 35 H 1.08002 * 125.58111 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47272 * 214.97645 * 22 21 17 37 37 H 1.08996 * 109.47082 * 334.98606 * 22 21 17 38 38 H 1.08996 * 109.47503 * 300.00443 * 23 22 21 39 39 H 1.09002 * 109.47162 * 60.00590 * 23 22 21 40 40 H 1.09002 * 109.47122 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1890 1.3496 -1.1794 6 1 5.0203 0.6661 -1.2694 7 6 3.8143 2.1356 -2.2643 8 7 2.7613 2.9157 -2.1775 9 14 4.8086 2.0814 -3.8447 10 1 4.2627 1.0273 -4.7370 11 1 4.7270 3.3981 -4.5264 12 1 6.2267 1.7754 -3.5271 13 6 4.1783 1.5396 1.1640 14 8 3.5717 1.5453 2.2202 15 6 5.5918 1.6351 1.1586 16 6 6.2756 1.6257 2.3274 17 6 7.7237 1.8371 2.3297 18 6 8.5117 2.1559 1.2366 19 6 9.8257 2.2648 1.6815 20 7 9.8573 2.0287 2.9696 21 7 8.5558 1.7632 3.4134 22 6 8.1575 1.4572 4.7896 23 6 8.3420 -0.0385 5.0534 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 2.4998 3.4634 -2.9341 32 1 6.1239 1.7153 0.2222 33 1 5.7522 1.4622 3.2579 34 1 8.1684 2.2950 0.2221 35 1 10.6799 2.5047 1.0656 36 1 8.7765 2.0274 5.4824 37 1 7.1107 1.7249 4.9329 38 1 7.7231 -0.6087 4.3607 39 1 9.3889 -0.3063 4.9101 40 1 8.0461 -0.2662 6.0775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126311180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = 50.795505 kcal Electronic energy + Delta-G solvation = -21284.012808 eV Core-core repulsion = 18100.889876 eV Total energy + Delta-G solvation = -3183.122932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71432 -38.81286 -35.35936 -34.37812 -33.32994 -32.69763 -31.36211 -29.47933 -28.62663 -26.06120 -24.95470 -23.81539 -22.79857 -20.92893 -20.38558 -19.39620 -18.54595 -17.16388 -16.46179 -15.76006 -15.04615 -14.81584 -14.72912 -14.36792 -14.03579 -13.81264 -13.73381 -13.28774 -12.89844 -12.66674 -12.49350 -12.39377 -12.11530 -11.60567 -11.54879 -11.33413 -11.28490 -11.10170 -10.96570 -10.72472 -10.48581 -10.37025 -10.29498 -10.02508 -9.69121 -9.20249 -8.72154 -8.60991 -7.84116 -7.49097 -6.38887 -4.28749 1.18187 2.60034 2.64043 3.06776 3.14900 3.16971 3.27285 3.98704 4.43740 4.56479 4.71739 4.93834 4.96913 5.09251 5.16898 5.20451 5.45626 5.57316 5.67412 5.82950 5.87316 5.94857 5.99155 6.05224 6.11498 6.17113 6.41042 6.55264 6.57934 6.72471 6.83459 6.85871 6.88329 6.95992 7.18148 7.23274 7.26555 7.62138 7.92014 7.93720 8.31686 8.95480 9.39393 9.85368 10.51987 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016153 B = 0.005182 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.043288 B = 5402.046570 C = 6828.866626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.129 4.129 3 C 0.095 3.905 4 N -0.420 5.420 5 C -0.337 4.337 6 H 0.090 0.910 7 C 0.049 3.951 8 N -0.860 5.860 9 Si 0.920 3.080 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.265 1.265 13 C 0.486 3.514 14 O -0.612 6.612 15 C -0.102 4.102 16 C -0.090 4.090 17 C 0.126 3.874 18 C -0.261 4.261 19 C 0.043 3.957 20 N -0.306 5.306 21 N -0.370 5.370 22 C 0.129 3.871 23 C -0.169 4.169 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.126 0.874 31 H 0.273 0.727 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.180 0.820 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -2.854 4.990 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.028 4.028 4 N -0.136 5.136 5 C -0.465 4.465 6 H 0.107 0.893 7 C -0.158 4.158 8 N -0.496 5.496 9 Si 0.746 3.254 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.189 1.189 13 C 0.278 3.722 14 O -0.501 6.501 15 C -0.125 4.125 16 C -0.114 4.114 17 C 0.000 4.000 18 C -0.290 4.290 19 C -0.141 4.141 20 N -0.128 5.128 21 N -0.154 5.154 22 C 0.008 3.992 23 C -0.227 4.227 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.143 0.857 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.170 0.830 35 H 0.197 0.803 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.754 -2.815 6.511 9.794 hybrid contribution -0.052 0.042 -1.683 1.685 sum 6.702 -2.773 4.827 8.713 Atomic orbital electron populations 1.21650 0.96664 1.00314 1.01387 1.21767 0.94597 0.99413 1.01010 1.21890 0.81474 0.94997 1.04467 1.43410 1.05251 1.59987 1.04918 1.19447 1.15441 1.22567 0.89071 0.89257 1.25654 0.96006 0.94045 1.00102 1.69532 1.23353 1.24612 1.32069 0.86029 0.80389 0.77928 0.81050 1.20116 1.20569 1.18936 1.17214 0.87974 0.82336 0.84642 1.90666 1.70869 1.57385 1.31181 1.22381 0.95534 0.96349 0.98263 1.21255 0.88093 1.02401 0.99604 1.20298 0.91774 1.00505 0.87399 1.21894 0.92582 1.14982 0.99560 1.23567 0.97936 1.00243 0.92335 1.77187 0.98482 1.23661 1.13435 1.49047 1.04528 1.54682 1.07177 1.21648 1.01608 0.97278 0.78705 1.22176 1.03077 0.94947 1.02512 0.93771 0.93268 0.92866 0.92275 0.93473 0.93002 0.85710 0.91611 0.84747 0.85269 0.83035 0.80302 0.89111 0.88604 0.91745 0.91807 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.15 0.37 -2.05 16 2 C -0.13 -2.66 6.24 -26.73 -0.17 -2.83 16 3 C 0.09 2.25 5.08 -4.04 -0.02 2.23 16 4 N -0.42 -10.40 2.52 -118.05 -0.30 -10.69 16 5 C -0.34 -8.16 7.97 -15.05 -0.12 -8.28 16 6 H 0.09 2.06 7.38 -52.49 -0.39 1.68 16 7 C 0.05 1.16 5.41 -17.44 -0.09 1.07 16 8 N -0.86 -21.58 10.75 55.50 0.60 -20.99 16 9 Si 0.92 18.46 29.56 -169.99 -5.02 13.43 16 10 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 13 C 0.49 11.82 7.40 -14.95 -0.11 11.71 16 14 O -0.61 -16.06 15.68 5.10 0.08 -15.98 16 15 C -0.10 -2.11 8.62 -39.28 -0.34 -2.45 16 16 C -0.09 -1.66 9.24 -37.32 -0.34 -2.00 16 17 C 0.13 2.13 6.91 -82.29 -0.57 1.57 16 18 C -0.26 -4.18 10.20 -39.16 -0.40 -4.58 16 19 C 0.04 0.62 11.96 -17.57 -0.21 0.41 16 20 N -0.31 -4.88 12.54 30.50 0.38 -4.50 16 21 N -0.37 -5.74 3.67 -57.32 -0.21 -5.95 16 22 C 0.13 1.53 7.05 -4.04 -0.03 1.50 16 23 C -0.17 -1.77 10.24 37.16 0.38 -1.39 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.28 7.34 -51.93 -0.38 0.90 16 30 H 0.13 3.12 5.17 -51.93 -0.27 2.86 16 31 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 32 H 0.13 2.67 5.69 -52.49 -0.30 2.37 16 33 H 0.13 2.35 6.78 -52.49 -0.36 1.99 16 34 H 0.15 2.29 7.33 -52.48 -0.38 1.90 16 35 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.06 7.21 -51.93 -0.37 0.69 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -29.19 338.79 -6.83 -36.03 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.81 Total: 8.63 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.65 Total: -5.09 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.47 Total: -42.13 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.08 Total: -15.98 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.19 -6.83 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126311180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.821 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds