Wall clock time and date at job start Mon Mar 30 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47515 * 2 1 4 4 H 1.08999 * 109.47169 * 53.91036 * 3 2 1 5 5 C 1.50696 * 109.47601 * 173.91819 * 3 2 1 6 6 C 1.38652 * 120.78998 * 97.15251 * 5 3 2 7 7 C 1.38207 * 119.16054 * 179.75985 * 6 5 3 8 8 N 1.31870 * 120.76426 * 0.52814 * 7 6 5 9 9 C 1.31870 * 121.72447 * 359.74981 * 8 7 6 10 10 C 1.38207 * 120.76689 * 359.96905 * 9 8 7 11 11 N 1.46902 * 109.46773 * 293.92129 * 3 2 1 12 12 C 1.46906 * 111.00034 * 323.12444 * 11 3 2 13 13 C 1.46897 * 111.00333 * 87.08280 * 11 3 2 14 14 C 1.50702 * 109.47170 * 163.07773 * 13 11 3 15 15 O 1.21296 * 120.00042 * 359.97438 * 14 13 11 16 16 N 1.34777 * 119.99827 * 180.02562 * 14 13 11 17 17 C 1.37100 * 119.99695 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99931 * 359.97438 * 17 16 14 19 19 C 1.38947 * 119.99813 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00306 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00081 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46596 * 60.00133 * 21 19 17 23 23 H 1.48497 * 109.47111 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47171 * 300.00585 * 21 19 17 25 25 H 1.08998 * 109.47415 * 71.30756 * 1 2 3 26 26 H 1.09001 * 109.47086 * 191.30930 * 1 2 3 27 27 H 1.08999 * 109.47325 * 311.30799 * 1 2 3 28 28 H 1.09005 * 109.47170 * 239.99531 * 2 1 3 29 29 H 1.09005 * 109.47349 * 120.00087 * 2 1 3 30 30 H 1.08003 * 120.41964 * 0.02562 * 6 5 3 31 31 H 1.07993 * 119.61785 * 180.25555 * 7 6 5 32 32 H 1.08008 * 119.61504 * 179.97438 * 9 8 7 33 33 H 1.07997 * 120.41606 * 180.02562 * 10 9 8 34 34 H 1.08998 * 109.47064 * 192.91195 * 12 11 3 35 35 H 1.09005 * 109.47012 * 312.91300 * 12 11 3 36 36 H 1.08998 * 109.46525 * 72.91013 * 12 11 3 37 37 H 1.08996 * 109.47203 * 43.07410 * 13 11 3 38 38 H 1.09002 * 109.47024 * 283.07596 * 13 11 3 39 39 H 0.96989 * 120.00022 * 359.97438 * 16 14 13 40 40 H 0.97001 * 120.00715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5905 1.9868 0.8304 5 6 3.5395 1.4451 0.1505 6 6 4.3640 1.5529 -0.9590 7 6 5.7346 1.5569 -0.7816 8 7 6.2591 1.4494 0.4235 9 6 5.5059 1.3396 1.5003 10 6 4.1274 1.3340 1.4013 11 7 1.6738 2.0913 -1.2661 12 6 1.7672 1.1472 -2.3877 13 6 0.3314 2.6823 -1.1857 14 6 0.1505 3.6725 -2.3073 15 8 1.0515 3.8670 -3.0958 16 7 -1.0120 4.3426 -2.4337 17 6 -1.1763 5.2438 -3.4538 18 1 -0.3741 5.4170 -4.1557 19 6 -2.3750 5.9342 -3.5844 20 7 -3.3510 5.7239 -2.7300 21 14 -2.5987 7.1627 -4.9738 22 1 -2.4400 6.4696 -6.2776 23 1 -3.9561 7.7595 -4.8931 24 1 -1.5780 8.2348 -4.8558 25 1 -0.3634 0.3293 -0.9734 26 1 -0.3633 -1.0077 0.2015 27 1 -0.3634 0.6784 0.7719 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9404 1.6370 -1.9489 31 1 6.3837 1.6446 -1.6403 32 1 5.9716 1.2531 2.4710 33 1 3.5159 1.2442 2.2869 34 1 1.7175 1.6950 -3.3288 35 1 2.7126 0.6077 -2.3308 36 1 0.9407 0.4385 -2.3357 37 1 0.2153 3.1916 -0.2291 38 1 -0.4178 1.8953 -1.2716 39 1 -1.7323 4.1873 -1.8031 40 1 -4.1877 6.2061 -2.8209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130214488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:59 Heat of formation + Delta-G solvation = 16.723178 kcal Electronic energy + Delta-G solvation = -21606.360976 eV Core-core repulsion = 18421.760557 eV Total energy + Delta-G solvation = -3184.600419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48283 -38.87422 -37.37231 -33.95973 -32.80636 -31.92969 -31.24778 -31.06339 -28.12257 -27.45485 -24.98455 -23.40784 -22.96915 -22.67947 -20.08354 -19.16073 -17.85939 -16.96003 -16.61468 -15.84090 -15.77070 -15.22427 -15.01301 -14.65865 -14.25824 -13.94680 -13.71137 -13.70010 -13.41948 -13.04289 -12.64024 -12.26395 -12.18669 -11.94090 -11.66420 -11.52036 -11.37321 -11.19963 -11.02867 -10.97677 -10.79666 -10.43949 -10.20749 -9.47605 -9.42904 -9.40944 -9.07301 -8.50860 -7.95851 -7.80661 -6.40754 -3.81486 1.19588 1.32759 3.20433 3.25996 3.30290 3.80808 3.91963 3.93343 4.23431 4.49799 4.53384 4.82271 4.86629 4.97337 5.12942 5.17346 5.19606 5.25530 5.29756 5.40255 5.50299 5.58084 5.67232 5.71814 5.73697 5.82442 5.85097 5.94519 6.01748 6.08165 6.20058 6.28827 6.41210 6.46363 6.77405 7.20673 7.30297 7.55755 8.01419 8.07302 8.63373 9.19502 9.55982 10.08286 10.77023 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.003927 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.006763 B = 7129.162218 C = 7677.885813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.148 4.148 3 C 0.116 3.884 4 H 0.092 0.908 5 C -0.021 4.021 6 C -0.151 4.151 7 C 0.092 3.908 8 N -0.494 5.494 9 C 0.091 3.909 10 C -0.174 4.174 11 N -0.506 5.506 12 C 0.014 3.986 13 C 0.039 3.961 14 C 0.444 3.556 15 O -0.577 6.577 16 N -0.566 5.566 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.130 0.870 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.391 0.609 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.430 -12.095 8.510 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.187 4.187 3 C 0.007 3.993 4 H 0.110 0.890 5 C -0.029 4.029 6 C -0.171 4.171 7 C -0.065 4.065 8 N -0.203 5.203 9 C -0.066 4.066 10 C -0.194 4.194 11 N -0.229 5.229 12 C -0.134 4.134 13 C -0.092 4.092 14 C 0.230 3.770 15 O -0.460 6.460 16 N -0.203 5.203 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.545 5.545 21 Si 0.757 3.243 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.168 0.832 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.148 0.852 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.224 0.776 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.078 -11.476 7.972 17.229 hybrid contribution -2.212 -0.012 -0.112 2.214 sum 7.866 -11.488 7.861 15.989 Atomic orbital electron populations 1.22094 0.95187 1.01954 1.02692 1.22218 0.96596 0.96913 1.03020 1.20782 0.90750 0.93858 0.93929 0.88982 1.20226 0.95648 0.94073 0.92989 1.22406 0.94174 0.99323 1.01183 1.22784 0.93310 0.95576 0.94784 1.67624 1.41101 1.12403 0.99213 1.22618 0.90500 0.96227 0.97257 1.21924 0.96437 1.03283 0.97752 1.61670 1.26657 1.32706 1.01853 1.22753 0.99891 0.94860 0.95849 1.22187 0.89548 0.97723 0.99763 1.19780 0.83973 0.85324 0.87972 1.90500 1.41569 1.68314 1.45635 1.41850 1.13317 1.36983 1.28183 1.19639 1.00261 1.16311 1.06575 0.88020 1.25236 0.95261 0.98811 0.98586 1.69598 1.05196 1.43044 1.36659 0.85938 0.77252 0.80298 0.80854 1.19947 1.21006 1.19906 0.91581 0.92542 0.92250 0.90814 0.91528 0.83222 0.83019 0.83206 0.85199 0.89342 0.91613 0.95393 0.89652 0.92137 0.77586 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.44 37.16 0.31 -1.33 16 2 C -0.15 -1.52 4.86 -26.73 -0.13 -1.65 16 3 C 0.12 1.42 2.20 -68.87 -0.15 1.27 16 4 H 0.09 1.09 7.43 -51.93 -0.39 0.70 16 5 C -0.02 -0.26 5.09 -104.32 -0.53 -0.79 16 6 C -0.15 -2.00 8.62 -39.44 -0.34 -2.34 16 7 C 0.09 1.17 11.18 -17.55 -0.20 0.97 16 8 N -0.49 -6.58 10.36 -13.25 -0.14 -6.72 16 9 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 10 C -0.17 -1.90 9.84 -39.44 -0.39 -2.29 16 11 N -0.51 -7.84 3.70 -237.73 -0.88 -8.72 16 12 C 0.01 0.20 6.79 60.07 0.41 0.61 16 13 C 0.04 0.66 4.74 -4.98 -0.02 0.63 16 14 C 0.44 10.25 7.59 -10.98 -0.08 10.16 16 15 O -0.58 -15.26 14.46 5.54 0.08 -15.18 16 16 N -0.57 -14.15 5.29 -10.96 -0.06 -14.21 16 17 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 18 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 21 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H 0.07 0.76 4.30 -51.93 -0.22 0.54 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 28 H 0.07 0.78 5.97 -51.93 -0.31 0.47 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.15 2.06 5.04 -52.48 -0.26 1.79 16 31 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.09 1.58 6.66 -51.93 -0.35 1.23 16 35 H 0.07 0.82 5.09 -51.93 -0.26 0.56 16 36 H 0.03 0.37 5.46 -51.93 -0.28 0.09 16 37 H 0.09 1.33 7.60 -51.93 -0.39 0.94 16 38 H 0.06 0.93 4.98 -51.93 -0.26 0.67 16 39 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -31.48 317.86 -7.16 -38.64 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.10 Total: 10.93 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.56 Total: -1.82 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.35 Total: -53.36 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.08 Total: -15.18 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.48 -7.16 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130214488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.362 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds