Wall clock time and date at job start Mon Mar 30 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47515 * 2 1 4 4 H 1.08999 * 109.47169 * 53.91036 * 3 2 1 5 5 C 1.50696 * 109.47601 * 173.91819 * 3 2 1 6 6 C 1.38652 * 120.78998 * 97.15251 * 5 3 2 7 7 C 1.38207 * 119.16054 * 179.75985 * 6 5 3 8 8 N 1.31870 * 120.76426 * 0.52814 * 7 6 5 9 9 C 1.31870 * 121.72447 * 359.74981 * 8 7 6 10 10 C 1.38207 * 120.76689 * 359.96905 * 9 8 7 11 11 N 1.46902 * 109.46773 * 293.92129 * 3 2 1 12 12 C 1.46906 * 111.00034 * 323.12444 * 11 3 2 13 13 C 1.46897 * 111.00333 * 87.08280 * 11 3 2 14 14 C 1.50702 * 109.47170 * 163.07773 * 13 11 3 15 15 O 1.21296 * 120.00042 * 359.97438 * 14 13 11 16 16 N 1.34777 * 119.99827 * 180.02562 * 14 13 11 17 17 C 1.37100 * 119.99695 * 179.97438 * 16 14 13 18 18 H 1.07999 * 119.99931 * 359.97438 * 17 16 14 19 19 C 1.38947 * 119.99813 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00306 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00081 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46596 * 60.00133 * 21 19 17 23 23 H 1.48497 * 109.47111 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47171 * 300.00585 * 21 19 17 25 25 H 1.08998 * 109.47415 * 71.30756 * 1 2 3 26 26 H 1.09001 * 109.47086 * 191.30930 * 1 2 3 27 27 H 1.08999 * 109.47325 * 311.30799 * 1 2 3 28 28 H 1.09005 * 109.47170 * 239.99531 * 2 1 3 29 29 H 1.09005 * 109.47349 * 120.00087 * 2 1 3 30 30 H 1.08003 * 120.41964 * 0.02562 * 6 5 3 31 31 H 1.07993 * 119.61785 * 180.25555 * 7 6 5 32 32 H 1.08008 * 119.61504 * 179.97438 * 9 8 7 33 33 H 1.07997 * 120.41606 * 180.02562 * 10 9 8 34 34 H 1.08998 * 109.47064 * 192.91195 * 12 11 3 35 35 H 1.09005 * 109.47012 * 312.91300 * 12 11 3 36 36 H 1.08998 * 109.46525 * 72.91013 * 12 11 3 37 37 H 1.08996 * 109.47203 * 43.07410 * 13 11 3 38 38 H 1.09002 * 109.47024 * 283.07596 * 13 11 3 39 39 H 0.96989 * 120.00022 * 359.97438 * 16 14 13 40 40 H 0.97001 * 120.00715 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5905 1.9868 0.8304 5 6 3.5395 1.4451 0.1505 6 6 4.3640 1.5529 -0.9590 7 6 5.7346 1.5569 -0.7816 8 7 6.2591 1.4494 0.4235 9 6 5.5059 1.3396 1.5003 10 6 4.1274 1.3340 1.4013 11 7 1.6738 2.0913 -1.2661 12 6 1.7672 1.1472 -2.3877 13 6 0.3314 2.6823 -1.1857 14 6 0.1505 3.6725 -2.3073 15 8 1.0515 3.8670 -3.0958 16 7 -1.0120 4.3426 -2.4337 17 6 -1.1763 5.2438 -3.4538 18 1 -0.3741 5.4170 -4.1557 19 6 -2.3750 5.9342 -3.5844 20 7 -3.3510 5.7239 -2.7300 21 14 -2.5987 7.1627 -4.9738 22 1 -2.4400 6.4696 -6.2776 23 1 -3.9561 7.7595 -4.8931 24 1 -1.5780 8.2348 -4.8558 25 1 -0.3634 0.3293 -0.9734 26 1 -0.3633 -1.0077 0.2015 27 1 -0.3634 0.6784 0.7719 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9404 1.6370 -1.9489 31 1 6.3837 1.6446 -1.6403 32 1 5.9716 1.2531 2.4710 33 1 3.5159 1.2442 2.2869 34 1 1.7175 1.6950 -3.3288 35 1 2.7126 0.6077 -2.3308 36 1 0.9407 0.4385 -2.3357 37 1 0.2153 3.1916 -0.2291 38 1 -0.4178 1.8953 -1.2716 39 1 -1.7323 4.1873 -1.8031 40 1 -4.1877 6.2061 -2.8209 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130214488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:58 Heat of formation + Delta-G solvation = -5.008145 kcal Electronic energy + Delta-G solvation = -21607.303317 eV Core-core repulsion = 18421.760557 eV Total energy + Delta-G solvation = -3185.542760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47649 -40.28815 -38.84823 -35.92309 -33.93425 -33.22543 -32.81398 -32.00965 -29.53387 -28.46234 -26.79078 -24.49355 -24.13680 -23.54858 -21.11495 -20.89507 -19.83966 -18.19129 -17.63636 -17.12745 -16.89248 -16.54358 -16.30042 -16.10587 -15.84859 -15.25553 -15.08150 -14.68684 -14.59930 -14.18744 -14.05633 -13.53269 -13.32423 -13.27366 -13.02064 -12.92549 -12.62265 -12.43648 -12.40648 -12.18165 -12.11973 -12.02451 -11.75905 -11.44195 -10.43641 -10.36594 -10.22025 -9.98258 -9.97210 -9.08493 -8.44348 -5.92611 0.29900 0.39210 1.40120 1.41706 1.52255 2.10156 2.28982 2.70621 2.96196 3.22439 3.45951 3.60746 3.67926 3.94402 4.01769 4.14137 4.21910 4.28830 4.33373 4.36514 4.43147 4.52041 4.56489 4.65877 4.70131 4.82703 4.83711 4.99438 5.05142 5.08155 5.19042 5.19458 5.39550 5.42465 5.48387 5.87758 5.91622 6.08507 6.21854 6.64241 7.10655 7.16230 7.60661 8.17356 8.72806 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.003927 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.006763 B = 7129.162218 C = 7677.885813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C 0.120 3.880 4 H 0.103 0.897 5 C -0.031 4.031 6 C -0.168 4.168 7 C 0.081 3.919 8 N -0.516 5.516 9 C 0.086 3.914 10 C -0.167 4.167 11 N -0.526 5.526 12 C 0.023 3.977 13 C 0.053 3.947 14 C 0.441 3.559 15 O -0.615 6.615 16 N -0.577 5.577 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.990 3.010 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.274 1.274 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.164 0.836 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.395 0.605 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -12.921 10.338 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.180 4.180 3 C 0.011 3.989 4 H 0.121 0.879 5 C -0.040 4.040 6 C -0.188 4.188 7 C -0.074 4.074 8 N -0.226 5.226 9 C -0.070 4.070 10 C -0.187 4.187 11 N -0.249 5.249 12 C -0.125 4.125 13 C -0.078 4.078 14 C 0.228 3.772 15 O -0.501 6.501 16 N -0.215 5.215 17 C -0.461 4.461 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.562 5.562 21 Si 0.813 3.187 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.199 1.199 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.154 0.846 31 H 0.181 0.819 32 H 0.197 0.803 33 H 0.179 0.821 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.229 0.771 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.798 -12.321 9.821 18.555 hybrid contribution -2.051 0.204 -0.627 2.155 sum 7.747 -12.118 9.193 17.070 Atomic orbital electron populations 1.22075 0.94954 1.03002 1.01804 1.22149 0.96631 0.95420 1.03753 1.20845 0.90743 0.95024 0.92250 0.87883 1.20380 0.95685 0.94394 0.93535 1.22372 0.94674 1.00703 1.01059 1.22986 0.93425 0.95678 0.95356 1.67666 1.41938 1.13255 0.99774 1.23177 0.90948 0.95030 0.97879 1.22212 0.96596 1.01893 0.98024 1.61530 1.25682 1.34024 1.03656 1.22612 1.01439 0.94414 0.93993 1.22050 0.91288 0.96845 0.97587 1.20911 0.82585 0.85083 0.88598 1.90477 1.42671 1.69471 1.47477 1.41919 1.14232 1.37292 1.28020 1.19596 1.00426 1.18375 1.07737 0.90503 1.25972 0.94549 0.99956 1.00666 1.69656 1.05454 1.43559 1.37570 0.85042 0.77631 0.77992 0.77995 1.19752 1.19490 1.19896 0.93389 0.91104 0.91565 0.91321 0.89528 0.84552 0.81914 0.80311 0.82125 0.93338 0.89806 0.94086 0.87687 0.89964 0.77097 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.44 71.98 0.61 -2.19 16 2 C -0.14 -2.48 4.86 30.59 0.15 -2.33 16 3 C 0.12 2.66 2.20 44.17 0.10 2.75 16 4 H 0.10 2.08 7.43 -2.39 -0.02 2.06 16 5 C -0.03 -0.72 5.09 -19.67 -0.10 -0.82 16 6 C -0.17 -4.38 8.62 22.36 0.19 -4.19 16 7 C 0.08 2.04 11.18 84.68 0.95 2.99 16 8 N -0.52 -13.09 10.36 -195.84 -2.03 -15.12 16 9 C 0.09 1.74 11.18 84.68 0.95 2.68 16 10 C -0.17 -3.15 9.84 22.36 0.22 -2.93 16 11 N -0.53 -15.89 3.70 -906.04 -3.36 -19.25 16 12 C 0.02 0.67 6.79 127.69 0.87 1.54 16 13 C 0.05 1.75 4.74 85.56 0.41 2.16 16 14 C 0.44 20.74 7.59 87.66 0.67 21.40 16 15 O -0.62 -33.82 14.46 -3.08 -0.04 -33.87 16 16 N -0.58 -29.41 5.29 -306.98 -1.62 -31.03 16 17 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 18 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 20 N -0.92 -49.59 13.05 21.66 0.28 -49.31 16 21 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H 0.05 1.01 4.30 -2.39 -0.01 1.00 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 1.06 8.05 -2.39 -0.02 1.05 16 28 H 0.07 1.30 5.97 -2.38 -0.01 1.28 16 29 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.14 3.85 5.04 -2.91 -0.01 3.84 16 31 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.05 1.81 6.66 -2.39 -0.02 1.79 16 35 H 0.08 2.11 5.09 -2.38 -0.01 2.10 16 36 H 0.04 1.07 5.46 -2.39 -0.01 1.06 16 37 H 0.11 3.07 7.60 -2.39 -0.02 3.05 16 38 H 0.08 2.40 4.98 -2.39 -0.01 2.39 16 39 H 0.40 19.08 7.90 -92.72 -0.73 18.34 16 40 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -69.16 317.86 1.88 -67.28 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.34 Total: 33.31 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 6.28 Total: 2.86 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -6.73 Total: -114.70 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.04 Total: -33.87 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -69.16 1.88 -67.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130214488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.276 kcal (2) G-P(sol) polarization free energy of solvation -69.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds