Wall clock time and date at job start Mon Mar 30 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47008 * 2 1 4 4 N 1.46497 * 109.47118 * 119.99929 * 2 1 3 5 5 C 1.38457 * 120.00515 * 84.72336 * 4 2 1 6 6 C 1.39402 * 119.53195 * 0.02562 * 5 4 2 7 7 C 1.36867 * 119.37509 * 179.97438 * 6 5 4 8 8 C 1.40343 * 118.49379 * 359.97438 * 7 6 5 9 9 C 1.47540 * 120.47553 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00321 * 141.63567 * 9 8 7 11 11 N 1.34775 * 120.00137 * 321.63430 * 9 8 7 12 12 C 1.46505 * 119.99823 * 4.81090 * 11 9 8 13 13 C 1.46496 * 120.00353 * 184.81135 * 11 9 8 14 14 C 1.50700 * 109.47003 * 89.99901 * 13 11 9 15 15 H 1.08004 * 120.00468 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00002 * 180.02562 * 14 13 11 17 17 N 1.31519 * 120.00305 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00368 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47282 * 89.99718 * 18 16 14 20 20 H 1.48501 * 109.47425 * 210.00078 * 18 16 14 21 21 H 1.48500 * 109.46778 * 330.00337 * 18 16 14 22 22 C 1.39562 * 119.05218 * 0.02562 * 8 7 6 23 23 N 1.31683 * 120.51265 * 359.73904 * 22 8 7 24 24 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47232 * 300.00076 * 1 2 3 26 26 H 1.08998 * 109.47127 * 60.00319 * 1 2 3 27 27 H 1.08999 * 109.46798 * 239.99738 * 2 1 3 28 28 H 1.09004 * 109.47671 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47384 * 300.00139 * 3 2 1 30 30 H 1.08999 * 109.47554 * 60.00201 * 3 2 1 31 31 H 0.97007 * 119.99922 * 265.00184 * 4 2 1 32 32 H 1.07993 * 120.31486 * 359.95644 * 6 5 4 33 33 H 1.07997 * 120.74555 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47289 * 84.95017 * 12 11 9 35 35 H 1.08995 * 109.47080 * 204.94553 * 12 11 9 36 36 H 1.08998 * 109.47502 * 324.94854 * 12 11 9 37 37 H 1.08998 * 109.47436 * 210.00157 * 13 11 9 38 38 H 1.08995 * 109.47227 * 330.00148 * 13 11 9 39 39 H 0.96989 * 120.00590 * 179.97438 * 17 16 14 40 40 H 1.07997 * 119.74509 * 179.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1452 -2.0693 1.1964 6 6 1.8059 -2.7907 0.0528 7 6 1.9330 -4.1535 0.0564 8 6 2.4047 -4.7789 1.2209 9 6 2.5580 -6.2453 1.2730 10 8 3.5061 -6.7372 1.8540 11 7 1.6472 -7.0398 0.6766 12 6 0.5637 -6.4481 -0.1121 13 6 1.7406 -8.4950 0.8171 14 6 0.9587 -8.9339 2.0284 15 1 0.4434 -8.2021 2.6328 16 6 0.9012 -10.2697 2.3649 17 7 1.5282 -11.1610 1.6286 18 14 -0.0686 -10.8139 3.8659 19 1 -1.4692 -11.1088 3.4702 20 1 0.5513 -12.0354 4.4396 21 1 -0.0588 -9.7302 4.8811 22 6 2.7256 -3.9939 2.3293 23 7 2.5929 -2.6846 2.2822 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 2.2490 -0.1822 1.9895 32 1 1.4459 -2.2792 -0.8276 33 1 1.6770 -4.7342 -0.8175 34 1 0.9133 -6.2619 -1.1277 35 1 -0.2825 -7.1344 -0.1394 36 1 0.2542 -5.5076 0.3436 37 1 1.3308 -8.9730 -0.0727 38 1 2.7853 -8.7824 0.9354 39 1 1.4881 -12.1007 1.8655 40 1 3.0891 -4.4635 3.2313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153190632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:17 Heat of formation + Delta-G solvation = -13.260086 kcal Electronic energy + Delta-G solvation = -21136.520063 eV Core-core repulsion = 17950.619472 eV Total energy + Delta-G solvation = -3185.900591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.70109 -40.16852 -37.88476 -36.68187 -34.91156 -33.74627 -32.92795 -30.54962 -29.39033 -28.06018 -27.48304 -25.65319 -24.50441 -23.83296 -21.82254 -20.61513 -18.86613 -18.67061 -18.21609 -17.63624 -17.07859 -16.29320 -16.22942 -16.02789 -15.56701 -15.36225 -14.89104 -14.70502 -14.40988 -14.27142 -13.80899 -13.71089 -13.59407 -13.37862 -13.02423 -12.94687 -12.87033 -12.77430 -12.52744 -12.29875 -12.20896 -11.91449 -11.73259 -11.22881 -10.88693 -10.76817 -10.63460 -10.38984 -9.46554 -8.72665 -8.22248 -6.37586 0.01919 0.34537 1.36659 1.39965 1.50449 1.89893 2.10249 2.33642 2.46215 2.92220 3.06886 3.54827 3.74519 3.91572 3.94840 4.05118 4.13272 4.22506 4.37016 4.40062 4.63022 4.74072 4.80110 4.84329 4.90024 4.91973 4.98066 5.02127 5.04988 5.19002 5.24554 5.29920 5.41552 5.47687 5.56437 5.83624 6.05460 6.05851 6.51378 6.68438 6.74532 7.11013 7.26450 7.43511 8.84701 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032962 B = 0.003505 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.266286 B = 7986.209149 C = 8009.667678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 C -0.156 4.156 4 N -0.707 5.707 5 C 0.411 3.589 6 C -0.233 4.233 7 C -0.004 4.004 8 C -0.254 4.254 9 C 0.552 3.448 10 O -0.600 6.600 11 N -0.602 5.602 12 C 0.075 3.925 13 C 0.259 3.741 14 C -0.546 4.546 15 H 0.052 0.948 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.968 3.032 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.274 1.274 22 C 0.193 3.807 23 N -0.567 5.567 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.406 0.594 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.000 1.000 39 H 0.268 0.732 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.814 26.238 -8.131 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.034 3.966 3 C -0.213 4.213 4 N -0.338 5.338 5 C 0.173 3.827 6 C -0.257 4.257 7 C -0.030 4.030 8 C -0.262 4.262 9 C 0.341 3.659 10 O -0.482 6.482 11 N -0.332 5.332 12 C -0.066 4.066 13 C 0.137 3.863 14 C -0.585 4.585 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.186 1.186 20 H -0.205 1.205 21 H -0.199 1.199 22 C 0.035 3.965 23 N -0.285 5.285 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.242 0.758 32 H 0.189 0.811 33 H 0.182 0.818 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.018 0.982 39 H 0.077 0.923 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.185 26.399 -7.368 27.726 hybrid contribution -0.223 -1.339 0.681 1.518 sum -4.409 25.061 -6.687 26.310 Atomic orbital electron populations 1.22308 0.94778 1.02383 1.03256 1.21281 0.94399 0.93896 0.86975 1.22038 1.01640 0.93634 1.04036 1.44811 1.69886 1.01316 1.17749 1.18887 0.87888 0.86737 0.89203 1.21391 1.10579 0.93747 0.99974 1.21759 0.89728 0.94916 0.96570 1.20453 1.13913 0.92563 0.99303 1.18599 0.81864 0.87163 0.78225 1.90699 1.33684 1.77355 1.46490 1.48038 1.27535 1.07691 1.49985 1.22239 0.89734 0.99473 0.95190 1.18821 0.95856 0.75388 0.96193 1.21707 1.31870 0.92893 1.11985 0.93018 1.25855 0.96649 0.96465 1.00060 1.70045 1.43752 1.02271 1.40629 0.85406 0.78973 0.77587 0.78787 1.18650 1.20485 1.19922 1.22357 0.89778 0.87614 0.96770 1.67287 1.22550 1.10537 1.28161 0.93057 0.92611 0.89446 0.88993 0.92236 0.88984 0.91704 0.75770 0.81129 0.81758 0.89892 0.91068 0.89906 0.95227 0.98157 0.92304 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.38 71.98 0.68 -0.79 16 2 C 0.14 1.30 2.86 44.99 0.13 1.43 16 3 C -0.16 -0.93 9.38 71.98 0.68 -0.26 16 4 N -0.71 -11.27 5.22 -324.65 -1.70 -12.96 16 5 C 0.41 9.57 7.61 133.26 1.01 10.58 16 6 C -0.23 -4.70 8.72 22.23 0.19 -4.51 16 7 C 0.00 -0.11 7.62 22.46 0.17 0.06 16 8 C -0.25 -8.93 5.27 -19.99 -0.11 -9.03 16 9 C 0.55 25.44 7.37 86.70 0.64 26.08 16 10 O -0.60 -33.76 16.46 -4.00 -0.07 -33.83 16 11 N -0.60 -27.02 2.86 -854.94 -2.44 -29.47 16 12 C 0.08 2.34 8.87 127.77 1.13 3.47 16 13 C 0.26 14.39 5.17 85.63 0.44 14.83 16 14 C -0.55 -32.36 9.39 25.60 0.24 -32.12 16 15 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 16 C 0.01 0.52 5.46 84.65 0.46 0.98 16 17 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 18 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 22 C 0.19 6.71 10.80 85.03 0.92 7.63 16 23 N -0.57 -17.04 10.38 -192.32 -2.00 -19.04 16 24 H 0.05 0.59 7.59 -2.39 -0.02 0.57 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.09 0.76 6.44 -2.39 -0.02 0.74 16 28 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.09 0.26 8.14 -2.38 -0.02 0.25 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.41 6.17 8.72 -92.70 -0.81 5.36 16 32 H 0.17 2.13 6.00 -2.91 -0.02 2.11 16 33 H 0.17 3.36 5.30 -2.91 -0.02 3.35 16 34 H 0.08 1.95 6.86 -2.38 -0.02 1.94 16 35 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 36 H 0.08 2.22 5.83 -2.39 -0.01 2.20 16 37 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 38 H 0.00 0.02 7.36 -2.39 -0.02 0.00 16 39 H 0.27 15.35 8.31 -92.72 -0.77 14.58 16 40 H 0.15 5.38 8.05 -2.91 -0.02 5.36 16 Total: -1.00 -78.83 332.05 2.95 -75.88 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.25 Total: 9.90 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.59 Total: 18.35 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -5.85 Total: -118.05 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.07 Total: -33.83 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -78.83 2.95 -75.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153190632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.623 kcal (2) G-P(sol) polarization free energy of solvation -78.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds