Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 H 1.09003 * 109.47300 * 54.99734 * 3 2 1 5 5 C 1.50703 * 109.47203 * 174.99569 * 3 2 1 6 6 H 1.08008 * 119.99747 * 120.00100 * 5 3 2 7 7 C 1.37872 * 120.00334 * 299.99885 * 5 3 2 8 8 N 1.31516 * 120.00050 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00326 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47264 * 120.00307 * 9 7 5 12 12 H 1.48501 * 109.47566 * 240.00527 * 9 7 5 13 13 N 1.46504 * 109.47045 * 294.99681 * 3 2 1 14 14 C 1.34773 * 119.99666 * 85.00111 * 13 3 2 15 15 O 1.21571 * 120.00367 * 0.02562 * 14 13 3 16 16 N 1.34783 * 119.99497 * 180.02562 * 14 13 3 17 17 C 1.39389 * 119.99472 * 185.09148 * 16 14 13 18 18 C 1.39051 * 119.69520 * 174.91376 * 17 16 14 19 19 C 1.38344 * 119.10073 * 180.27687 * 18 17 16 20 20 C 1.50707 * 120.74912 * 179.72754 * 19 18 17 21 21 C 1.38848 * 118.49924 * 359.50368 * 19 18 17 22 22 C 1.38062 * 119.30749 * 0.49355 * 21 19 18 23 23 C 1.50702 * 119.57436 * 179.72554 * 22 21 19 24 24 N 1.31941 * 120.85088 * 359.74983 * 22 21 19 25 25 H 1.08999 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47363 * 300.00280 * 1 2 3 27 27 H 1.09007 * 109.46936 * 60.00352 * 1 2 3 28 28 H 1.09002 * 109.47363 * 239.99720 * 2 1 3 29 29 H 1.09007 * 109.46936 * 119.99648 * 2 1 3 30 30 H 0.96995 * 120.00623 * 179.97438 * 8 7 5 31 31 H 0.96994 * 119.99869 * 264.99507 * 13 3 2 32 32 H 0.96994 * 120.00317 * 5.08985 * 16 14 13 33 33 H 1.08001 * 120.44801 * 359.97438 * 18 17 16 34 34 H 1.08998 * 109.47133 * 89.99637 * 20 19 18 35 35 H 1.08999 * 109.46655 * 209.99767 * 20 19 18 36 36 H 1.08995 * 109.47254 * 329.99756 * 20 19 18 37 37 H 1.08002 * 120.34627 * 180.22860 * 21 19 18 38 38 H 1.08995 * 109.47194 * 270.02963 * 23 22 21 39 39 H 1.09006 * 109.46889 * 30.02527 * 23 22 21 40 40 H 1.08999 * 109.47325 * 150.02219 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3366 2.1730 9 14 6.0049 0.8799 1.3813 10 1 6.5988 1.5451 0.1939 11 1 6.3999 1.6156 2.6094 12 1 6.4962 -0.5191 1.4629 13 7 1.6525 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3670 15 8 -0.3410 2.6326 -0.4320 16 7 0.0786 3.2664 -2.5189 17 6 -1.1364 3.9444 -2.6037 18 6 -1.4510 4.6523 -3.7584 19 6 -2.6577 5.3255 -3.8271 20 6 -3.0337 6.1094 -5.0582 21 6 -3.5165 5.2587 -2.7382 22 6 -3.1395 4.5367 -1.6235 23 6 -4.0643 4.4653 -0.4357 24 7 -1.9798 3.9087 -1.5844 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8292 -0.0618 2.9496 31 1 2.2721 2.1231 -1.9977 32 1 0.6673 3.2280 -3.2888 33 1 -0.7606 4.6804 -4.5885 34 1 -3.5686 5.4612 -5.7523 35 1 -3.6733 6.9454 -4.7752 36 1 -2.1311 6.4884 -5.5373 37 1 -4.4676 5.7698 -2.7612 38 1 -3.8458 5.2881 0.2449 39 1 -5.0976 4.5390 -0.7749 40 1 -3.9186 3.5171 0.0818 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162626867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = 6.186044 kcal Electronic energy + Delta-G solvation = -21483.768513 eV Core-core repulsion = 18298.711170 eV Total energy + Delta-G solvation = -3185.057344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57749 -38.99060 -35.61559 -34.26869 -34.02212 -32.40946 -31.34619 -30.27929 -27.96595 -27.29983 -26.74406 -23.39597 -22.44964 -21.65077 -20.20139 -19.39175 -18.16265 -17.11025 -16.24685 -15.89180 -15.50056 -15.28101 -14.91917 -14.29145 -14.04902 -13.58687 -13.38935 -13.28970 -12.78039 -12.67589 -12.62037 -12.49618 -12.10786 -11.90112 -11.64375 -11.48280 -11.22441 -10.92318 -10.82379 -10.28023 -10.18005 -10.10935 -9.67615 -9.51474 -9.30205 -8.99587 -8.64090 -8.46304 -8.02514 -7.67494 -6.09805 -4.18866 1.28140 1.45814 3.04008 3.25042 3.33103 3.35745 3.75683 4.24579 4.33053 4.45140 4.63075 4.85574 5.10310 5.16979 5.21437 5.25086 5.36033 5.40497 5.58863 5.65862 5.74314 5.78021 6.02303 6.20035 6.34419 6.46966 6.54226 6.55485 6.73020 6.94905 7.08456 7.20413 7.35880 7.45128 7.53874 7.67664 7.88109 7.97617 8.22761 8.39011 8.79034 8.94279 9.37282 9.52251 10.95611 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029711 B = 0.003941 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.170389 B = 7103.118524 C = 7581.266795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.723 5.723 14 C 0.680 3.320 15 O -0.528 6.528 16 N -0.677 5.677 17 C 0.401 3.599 18 C -0.231 4.231 19 C -0.015 4.015 20 C -0.112 4.112 21 C -0.222 4.222 22 C 0.165 3.835 23 C -0.103 4.103 24 N -0.473 5.473 25 H 0.020 0.980 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.029 0.971 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.383 0.617 32 H 0.407 0.593 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.165 8.813 -13.128 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.375 5.375 14 C 0.380 3.620 15 O -0.399 6.399 16 N -0.325 5.325 17 C 0.167 3.833 18 C -0.255 4.255 19 C -0.023 4.023 20 C -0.169 4.169 21 C -0.244 4.244 22 C 0.026 3.974 23 C -0.160 4.160 24 N -0.189 5.189 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.215 0.785 32 H 0.242 0.758 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.495 8.120 -11.210 17.993 hybrid contribution 1.508 0.365 -1.456 2.127 sum -9.988 8.484 -12.666 18.225 Atomic orbital electron populations 1.21811 0.98182 0.97795 1.01427 1.21955 0.92740 0.99882 1.02111 1.18699 0.93915 0.88848 0.79997 0.93248 1.21266 0.90711 1.38887 1.06253 0.92095 1.24878 0.98566 0.94869 0.95395 1.69909 1.34986 1.37628 1.09341 0.86401 0.84907 0.77727 0.78081 1.19804 1.20907 1.20896 1.45859 1.13183 1.59249 1.19236 1.16234 0.83844 0.79474 0.82479 1.91007 1.50805 1.61151 1.36963 1.43090 1.18706 1.55209 1.15543 1.18196 0.86053 0.89415 0.89636 1.21212 0.99917 1.05174 0.99185 1.19956 0.92640 0.94263 0.95464 1.20780 1.02214 0.99230 0.94672 1.21630 1.01814 1.06003 0.94982 1.21189 0.91080 0.90519 0.94634 1.20703 0.96218 1.04163 0.94920 1.67617 1.02830 1.21002 1.27421 0.96126 0.93085 0.94253 0.95190 0.88322 0.92627 0.78526 0.75767 0.85177 0.90703 0.91152 0.91221 0.85384 0.90463 0.91064 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.32 16 3 C 0.29 7.33 2.24 -69.08 -0.15 7.17 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.84 11.29 55.43 0.63 -24.22 16 9 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 13 N -0.72 -15.23 5.03 -59.81 -0.30 -15.53 16 14 C 0.68 14.31 7.09 -86.92 -0.62 13.69 16 15 O -0.53 -13.13 11.74 5.30 0.06 -13.07 16 16 N -0.68 -11.09 5.40 -15.81 -0.09 -11.17 16 17 C 0.40 6.63 7.42 -154.72 -1.15 5.48 16 18 C -0.23 -2.91 9.64 -39.24 -0.38 -3.29 16 19 C -0.02 -0.17 5.91 -104.35 -0.62 -0.79 16 20 C -0.11 -0.83 10.06 36.01 0.36 -0.47 16 21 C -0.22 -2.68 9.44 -39.42 -0.37 -3.05 16 22 C 0.17 2.48 6.78 -82.61 -0.56 1.92 16 23 C -0.10 -1.26 10.17 36.01 0.37 -0.89 16 24 N -0.47 -8.84 7.80 -8.60 -0.07 -8.91 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.27 7.84 -51.93 -0.41 0.87 16 27 H 0.04 0.91 5.65 -51.93 -0.29 0.62 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.38 6.88 8.56 -40.82 -0.35 6.53 16 32 H 0.41 4.94 8.72 -40.82 -0.36 4.58 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 36 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 37 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -32.98 330.29 -9.02 -42.00 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.87 Total: 9.38 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.34 Total: 0.88 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.17 Total: -59.83 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.06 Total: -13.07 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.98 -9.02 -42.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162626867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.190 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds