Wall clock time and date at job start Mon Mar 30 2020 02:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47325 * 2 1 4 4 H 1.09003 * 109.47300 * 54.99734 * 3 2 1 5 5 C 1.50703 * 109.47203 * 174.99569 * 3 2 1 6 6 H 1.08008 * 119.99747 * 120.00100 * 5 3 2 7 7 C 1.37872 * 120.00334 * 299.99885 * 5 3 2 8 8 N 1.31516 * 120.00050 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00326 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47264 * 120.00307 * 9 7 5 12 12 H 1.48501 * 109.47566 * 240.00527 * 9 7 5 13 13 N 1.46504 * 109.47045 * 294.99681 * 3 2 1 14 14 C 1.34773 * 119.99666 * 85.00111 * 13 3 2 15 15 O 1.21571 * 120.00367 * 0.02562 * 14 13 3 16 16 N 1.34783 * 119.99497 * 180.02562 * 14 13 3 17 17 C 1.39389 * 119.99472 * 185.09148 * 16 14 13 18 18 C 1.39051 * 119.69520 * 174.91376 * 17 16 14 19 19 C 1.38344 * 119.10073 * 180.27687 * 18 17 16 20 20 C 1.50707 * 120.74912 * 179.72754 * 19 18 17 21 21 C 1.38848 * 118.49924 * 359.50368 * 19 18 17 22 22 C 1.38062 * 119.30749 * 0.49355 * 21 19 18 23 23 C 1.50702 * 119.57436 * 179.72554 * 22 21 19 24 24 N 1.31941 * 120.85088 * 359.74983 * 22 21 19 25 25 H 1.08999 * 109.47489 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47363 * 300.00280 * 1 2 3 27 27 H 1.09007 * 109.46936 * 60.00352 * 1 2 3 28 28 H 1.09002 * 109.47363 * 239.99720 * 2 1 3 29 29 H 1.09007 * 109.46936 * 119.99648 * 2 1 3 30 30 H 0.96995 * 120.00623 * 179.97438 * 8 7 5 31 31 H 0.96994 * 119.99869 * 264.99507 * 13 3 2 32 32 H 0.96994 * 120.00317 * 5.08985 * 16 14 13 33 33 H 1.08001 * 120.44801 * 359.97438 * 18 17 16 34 34 H 1.08998 * 109.47133 * 89.99637 * 20 19 18 35 35 H 1.08999 * 109.46655 * 209.99767 * 20 19 18 36 36 H 1.08995 * 109.47254 * 329.99756 * 20 19 18 37 37 H 1.08002 * 120.34627 * 180.22860 * 21 19 18 38 38 H 1.08995 * 109.47194 * 270.02963 * 23 22 21 39 39 H 1.09006 * 109.46889 * 30.02527 * 23 22 21 40 40 H 1.08999 * 109.47325 * 150.02219 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3366 2.1730 9 14 6.0049 0.8799 1.3813 10 1 6.5988 1.5451 0.1939 11 1 6.3999 1.6156 2.6094 12 1 6.4962 -0.5191 1.4629 13 7 1.6525 2.0974 -1.2519 14 6 0.4353 2.6643 -1.3670 15 8 -0.3410 2.6326 -0.4320 16 7 0.0786 3.2664 -2.5189 17 6 -1.1364 3.9444 -2.6037 18 6 -1.4510 4.6523 -3.7584 19 6 -2.6577 5.3255 -3.8271 20 6 -3.0337 6.1094 -5.0582 21 6 -3.5165 5.2587 -2.7382 22 6 -3.1395 4.5367 -1.6235 23 6 -4.0643 4.4653 -0.4357 24 7 -1.9798 3.9087 -1.5844 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.8292 -0.0618 2.9496 31 1 2.2721 2.1231 -1.9977 32 1 0.6673 3.2280 -3.2888 33 1 -0.7606 4.6804 -4.5885 34 1 -3.5686 5.4612 -5.7523 35 1 -3.6733 6.9454 -4.7752 36 1 -2.1311 6.4884 -5.5373 37 1 -4.4676 5.7698 -2.7612 38 1 -3.8458 5.2881 0.2449 39 1 -5.0976 4.5390 -0.7749 40 1 -3.9186 3.5171 0.0818 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162626867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:33 Heat of formation + Delta-G solvation = -15.738550 kcal Electronic energy + Delta-G solvation = -21484.719235 eV Core-core repulsion = 18298.711170 eV Total energy + Delta-G solvation = -3186.008065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81376 -40.45470 -37.30511 -35.84925 -34.95503 -34.29816 -33.00154 -31.77530 -29.08958 -28.64186 -28.05505 -25.19942 -23.90265 -22.86732 -21.72607 -21.14290 -19.73987 -18.50652 -17.89928 -17.03801 -16.88070 -16.73544 -16.56541 -15.86357 -15.50157 -15.01710 -14.65208 -14.48691 -14.15694 -14.05105 -13.61634 -13.56044 -13.26616 -13.19025 -13.18232 -13.05205 -12.83910 -12.69571 -12.47225 -12.15528 -12.05409 -11.62607 -11.35601 -11.20794 -11.02493 -10.53952 -10.29773 -9.93857 -9.64614 -9.05071 -8.15182 -6.32517 0.22794 0.46613 1.44915 1.45319 1.57186 1.69622 2.31721 2.42612 3.00294 3.14023 3.24457 3.67008 3.80751 4.11655 4.25248 4.33003 4.49144 4.56776 4.60866 4.69006 4.75398 4.77501 4.83574 4.88833 4.99093 5.06161 5.12647 5.24205 5.30209 5.41383 5.45662 5.52935 5.53849 5.62359 5.76278 5.85893 6.00824 6.16365 6.19661 6.75948 7.08539 7.35396 7.48527 7.84271 8.90720 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029711 B = 0.003941 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.170389 B = 7103.118524 C = 7581.266795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.298 3.702 4 H -0.005 1.005 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.718 5.718 14 C 0.681 3.319 15 O -0.573 6.573 16 N -0.664 5.664 17 C 0.362 3.638 18 C -0.218 4.218 19 C -0.016 4.016 20 C -0.108 4.108 21 C -0.209 4.209 22 C 0.133 3.867 23 C -0.099 4.099 24 N -0.530 5.530 25 H 0.042 0.958 26 H 0.022 0.978 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.400 0.600 32 H 0.427 0.573 33 H 0.163 0.837 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.163 0.837 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 10.198 -16.196 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C 0.194 3.806 4 H 0.013 0.987 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.798 3.202 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.372 5.372 14 C 0.380 3.620 15 O -0.448 6.448 16 N -0.314 5.314 17 C 0.130 3.870 18 C -0.242 4.242 19 C -0.024 4.024 20 C -0.164 4.164 21 C -0.230 4.230 22 C -0.005 4.005 23 C -0.157 4.157 24 N -0.247 5.247 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.266 0.734 33 H 0.180 0.820 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.180 0.820 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.604 9.541 -14.360 20.782 hybrid contribution 1.396 0.029 -0.554 1.502 sum -10.208 9.570 -14.914 20.451 Atomic orbital electron populations 1.21610 0.97222 0.98660 0.99980 1.21795 0.93424 0.99329 1.01285 1.18243 0.93495 0.88701 0.80160 0.98699 1.21592 0.91203 1.38886 1.06758 0.90930 1.25786 1.03422 0.94380 0.94972 1.70065 1.37036 1.38351 1.09897 0.85288 0.78951 0.77829 0.78176 1.18386 1.21120 1.20375 1.45469 1.13912 1.59346 1.18475 1.16347 0.83151 0.79240 0.83234 1.90980 1.51977 1.62723 1.39079 1.42689 1.19455 1.54690 1.14595 1.18564 0.86005 0.91355 0.91044 1.21549 1.00911 1.03406 0.98336 1.20518 0.91664 0.93528 0.96659 1.20868 1.03359 0.99350 0.92856 1.22013 1.02993 1.04233 0.93800 1.21630 0.90687 0.91576 0.96593 1.20745 0.97860 1.02665 0.94385 1.67438 1.04703 1.23048 1.29531 0.93880 0.95836 0.94368 0.93984 0.90874 0.92600 0.76537 0.73444 0.81956 0.89156 0.89576 0.89878 0.81986 0.90166 0.87552 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.51 71.98 0.61 -5.07 16 2 C -0.12 -6.10 5.45 30.59 0.17 -5.93 16 3 C 0.30 15.77 2.24 44.24 0.10 15.87 16 4 H 0.00 -0.31 7.58 -2.39 -0.02 -0.33 16 5 C -0.55 -29.29 8.73 25.60 0.22 -29.07 16 6 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -53.15 11.29 21.45 0.24 -52.91 16 9 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.72 -30.89 5.03 -461.42 -2.32 -33.21 16 14 C 0.68 29.56 7.09 179.05 1.27 30.83 16 15 O -0.57 -30.19 11.74 -3.94 -0.05 -30.24 16 16 N -0.66 -21.73 5.40 -322.20 -1.74 -23.46 16 17 C 0.36 11.92 7.42 132.93 0.99 12.91 16 18 C -0.22 -4.99 9.64 22.49 0.22 -4.77 16 19 C -0.02 -0.30 5.91 -19.69 -0.12 -0.42 16 20 C -0.11 -1.08 10.06 71.24 0.72 -0.37 16 21 C -0.21 -4.50 9.44 22.37 0.21 -4.29 16 22 C 0.13 3.98 6.78 42.50 0.29 4.27 16 23 C -0.10 -2.47 10.17 71.24 0.72 -1.75 16 24 N -0.53 -20.44 7.80 -181.12 -1.41 -21.86 16 25 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.02 1.22 7.84 -2.39 -0.02 1.20 16 27 H 0.04 1.83 5.65 -2.38 -0.01 1.82 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 4.15 5.95 -2.38 -0.01 4.13 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.40 14.23 8.56 -92.71 -0.79 13.43 16 32 H 0.43 9.85 8.72 -92.71 -0.81 9.05 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.64 8.10 -2.39 -0.02 0.63 16 36 H 0.08 0.66 8.10 -2.39 -0.02 0.64 16 37 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 1.78 8.08 -2.38 -0.02 1.76 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -76.37 330.29 2.06 -74.31 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -0.54 Total: 29.44 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 5.85 Total: 13.45 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -5.23 Total: -131.44 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -76.37 2.06 -74.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162626867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.573 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds