Wall clock time and date at job start Mon Mar 30 2020 02:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 H 1.08996 * 109.47309 * 305.00540 * 3 2 1 5 5 C 1.50703 * 109.47386 * 185.00074 * 3 2 1 6 6 H 1.07996 * 120.00051 * 240.00339 * 5 3 2 7 7 C 1.37877 * 119.99776 * 60.00421 * 5 3 2 8 8 N 1.31512 * 120.00234 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99756 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47299 * 59.99664 * 9 7 5 11 11 H 1.48503 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47198 * 299.99505 * 9 7 5 13 13 N 1.46503 * 109.46778 * 65.00333 * 3 2 1 14 14 C 1.34777 * 119.99847 * 274.99592 * 13 3 2 15 15 O 1.21738 * 120.00335 * 0.02562 * 14 13 3 16 16 C 1.46154 * 120.00247 * 179.97438 * 14 13 3 17 17 C 1.35250 * 120.00449 * 180.02562 * 16 14 13 18 18 C 1.46429 * 120.00139 * 174.88376 * 17 16 14 19 19 C 1.38396 * 126.51318 * 5.18678 * 18 17 16 20 20 C 1.39176 * 107.64260 * 179.97438 * 19 18 17 21 21 N 1.30990 * 108.83110 * 359.97438 * 20 19 18 22 22 N 1.36806 * 126.51269 * 184.86510 * 18 17 16 23 23 C 1.46493 * 126.15651 * 0.02995 * 22 18 17 24 24 C 1.52998 * 109.47756 * 94.95860 * 23 22 18 25 25 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47627 * 59.99608 * 1 2 3 27 27 H 1.08999 * 109.47367 * 299.99346 * 1 2 3 28 28 H 1.08995 * 109.47540 * 120.00562 * 2 1 3 29 29 H 1.08999 * 109.47367 * 240.00654 * 2 1 3 30 30 H 0.97000 * 120.00253 * 179.97438 * 8 7 5 31 31 H 0.96994 * 119.99890 * 95.00184 * 13 3 2 32 32 H 1.08004 * 119.99479 * 0.02562 * 16 14 13 33 33 H 1.07997 * 119.99428 * 354.88862 * 17 16 14 34 34 H 1.08002 * 126.18302 * 359.94908 * 19 18 17 35 35 H 1.08006 * 125.58612 * 180.02562 * 20 19 18 36 36 H 1.09003 * 109.47166 * 214.96387 * 23 22 18 37 37 H 1.09005 * 109.47121 * 334.95921 * 23 22 18 38 38 H 1.08995 * 109.47298 * 180.02562 * 24 23 22 39 39 H 1.08997 * 109.46804 * 300.00511 * 24 23 22 40 40 H 1.09004 * 109.46256 * 59.99990 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8786 -1.2281 8 7 3.4062 0.3368 -2.1730 9 14 6.0049 0.8803 -1.3812 10 1 6.5966 0.1455 -0.2345 11 1 6.3977 0.2160 -2.6500 12 1 6.5003 2.2802 -1.3809 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3426 2.6318 0.4310 16 6 0.0482 3.3172 2.6161 17 6 -1.1736 3.8857 2.7319 18 6 -1.6042 4.4405 4.0168 19 6 -0.8399 4.5464 5.1657 20 6 -1.6342 5.1294 6.1486 21 7 -2.8190 5.3726 5.6454 22 7 -2.8365 4.9584 4.3078 23 6 -3.9713 5.0588 3.3869 24 6 -4.8845 3.8447 3.5682 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1230 1.9978 32 1 0.7379 3.3457 3.4467 33 1 -1.8316 3.9303 1.8767 34 1 0.1874 4.2328 5.2792 35 1 -1.3244 5.3465 7.1602 36 1 -4.5315 5.9696 3.5984 37 1 -3.6050 5.0877 2.3606 38 1 -5.7286 3.9192 2.8827 39 1 -4.3244 2.9339 3.3567 40 1 -5.2509 3.8158 4.5945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183789616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:40 Heat of formation + Delta-G solvation = 24.000016 kcal Electronic energy + Delta-G solvation = -20933.342639 eV Core-core repulsion = 17749.057767 eV Total energy + Delta-G solvation = -3184.284872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97941 -40.63707 -37.03379 -35.43984 -34.87350 -34.26471 -32.77041 -30.62048 -29.96960 -28.86749 -25.68523 -24.82853 -24.28433 -22.34494 -21.58350 -21.02274 -19.98203 -18.85193 -18.17492 -17.16911 -17.04234 -16.22244 -16.15406 -16.07121 -15.77912 -15.20470 -14.91997 -14.58913 -14.28574 -14.13001 -13.83438 -13.51766 -13.43898 -13.15330 -13.06231 -12.88864 -12.69760 -12.63693 -12.27481 -12.17137 -12.04090 -11.69360 -11.61669 -11.51016 -11.04296 -10.75946 -10.49647 -9.99279 -9.63265 -9.21663 -8.13979 -6.31177 -0.33561 1.26871 1.46671 1.47601 1.48706 1.56333 1.93312 2.38460 2.54060 2.69239 3.15705 3.56567 3.59177 3.94063 4.05145 4.12766 4.22521 4.31277 4.46887 4.51662 4.59451 4.70382 4.74802 4.78147 4.86859 4.89915 5.07218 5.13628 5.16731 5.30899 5.33117 5.45908 5.58441 5.64242 5.71664 5.82426 5.96142 5.97671 6.19151 6.69559 6.76825 7.01419 7.35749 7.59228 8.91139 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029437 B = 0.003449 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.959015 B = 8117.195917 C = 8751.819120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.696 5.696 14 C 0.526 3.474 15 O -0.591 6.591 16 C -0.160 4.160 17 C -0.024 4.024 18 C 0.085 3.915 19 C -0.246 4.246 20 C 0.040 3.960 21 N -0.317 5.317 22 N -0.369 5.369 23 C 0.117 3.883 24 C -0.163 4.163 25 H 0.044 0.956 26 H 0.026 0.974 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.264 0.736 31 H 0.406 0.594 32 H 0.163 0.837 33 H 0.129 0.871 34 H 0.174 0.826 35 H 0.216 0.784 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.534 7.326 14.822 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.344 5.344 14 C 0.315 3.685 15 O -0.475 6.475 16 C -0.183 4.183 17 C -0.045 4.045 18 C -0.041 4.041 19 C -0.275 4.275 20 C -0.143 4.143 21 N -0.139 5.139 22 N -0.153 5.153 23 C -0.003 4.003 24 C -0.221 4.221 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.181 0.819 33 H 0.147 0.853 34 H 0.191 0.809 35 H 0.232 0.768 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.341 7.690 14.135 19.687 hybrid contribution 1.848 -0.465 -0.491 1.968 sum -9.493 7.225 13.643 18.124 Atomic orbital electron populations 1.21680 0.96986 0.99094 1.00310 1.21788 0.93758 0.99168 1.01338 1.18385 0.93642 0.89209 0.81395 0.98216 1.21573 0.91469 1.38961 1.06744 0.90885 1.25755 1.03222 0.94396 0.95057 1.70039 1.37108 1.38337 1.09853 0.85444 0.79232 0.78432 0.77507 1.18904 1.21355 1.19669 1.46170 1.15251 1.55303 1.17641 1.18713 0.82117 0.79201 0.88461 1.90777 1.52447 1.61954 1.42305 1.23020 0.97955 0.99944 0.97358 1.21322 0.96191 0.93707 0.93329 1.20218 0.87381 1.00974 0.95500 1.22268 1.02798 1.10797 0.91664 1.24232 0.90193 0.98172 1.01687 1.77235 1.22942 1.23162 0.90591 1.49400 1.10195 1.46535 1.09211 1.21995 0.85271 1.01485 0.91596 1.22129 1.00012 0.96679 1.03272 0.93705 0.95501 0.93677 0.94000 0.91026 0.92635 0.75862 0.81940 0.85308 0.80852 0.76767 0.87459 0.87809 0.88172 0.93224 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.51 71.98 0.61 -4.87 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.74 16 3 C 0.28 13.92 2.24 44.25 0.10 14.02 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 5 C -0.55 -28.48 8.73 25.60 0.22 -28.26 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -51.79 11.29 21.45 0.24 -51.55 16 9 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 10 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 13 N -0.70 -27.61 5.02 -450.57 -2.26 -29.87 16 14 C 0.53 19.88 6.30 86.30 0.54 20.42 16 15 O -0.59 -27.02 13.37 -4.47 -0.06 -27.08 16 16 C -0.16 -4.29 9.54 23.64 0.23 -4.06 16 17 C -0.02 -0.61 9.29 23.71 0.22 -0.39 16 18 C 0.09 2.00 6.91 40.54 0.28 2.28 16 19 C -0.25 -4.91 10.21 22.53 0.23 -4.68 16 20 C 0.04 0.76 11.96 85.04 1.02 1.78 16 21 N -0.32 -7.54 12.54 -57.39 -0.72 -8.26 16 22 N -0.37 -8.47 3.67 -335.28 -1.23 -9.70 16 23 C 0.12 2.00 7.05 86.38 0.61 2.61 16 24 C -0.16 -2.57 10.24 71.98 0.74 -1.83 16 25 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.03 1.28 7.84 -2.38 -0.02 1.26 16 27 H 0.04 1.92 5.64 -2.39 -0.01 1.91 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 3.91 5.95 -2.39 -0.01 3.89 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.41 13.36 8.52 -92.71 -0.79 12.57 16 32 H 0.16 3.18 6.92 -2.91 -0.02 3.16 16 33 H 0.13 3.49 6.83 -2.91 -0.02 3.47 16 34 H 0.17 2.57 7.28 -2.91 -0.02 2.55 16 35 H 0.22 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.61 7.21 -2.38 -0.02 1.59 16 38 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -68.49 335.19 3.67 -64.82 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.26 Total: 25.60 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.41 Total: -7.42 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -3.97 Total: -99.38 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.06 Total: -27.08 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -68.49 3.67 -64.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183789616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.821 kcal (2) G-P(sol) polarization free energy of solvation -68.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds