Wall clock time and date at job start Mon Mar 30 2020 02:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21731 * 120.00062 * 359.97438 * 14 13 3 16 16 C 1.41827 * 119.99874 * 180.02562 * 14 13 3 17 17 C 1.35044 * 119.99783 * 180.02562 * 16 14 13 18 18 C 1.46968 * 119.99610 * 179.97438 * 17 16 14 19 19 C 1.41431 * 126.44723 * 0.02562 * 18 17 16 20 20 N 1.30440 * 108.04434 * 179.97438 * 19 18 17 21 21 N 1.39930 * 108.96131 * 359.97438 * 20 19 18 22 22 C 1.46503 * 125.73800 * 180.02562 * 21 20 19 23 23 C 1.34391 * 108.51563 * 359.74917 * 21 20 19 24 24 C 1.50700 * 126.31879 * 180.24498 * 23 21 20 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08003 * 120.00082 * 359.97438 * 16 14 13 33 33 H 1.07995 * 120.00133 * 359.97438 * 17 16 14 34 34 H 1.08000 * 125.97856 * 359.97438 * 19 18 17 35 35 H 1.08996 * 109.46987 * 90.03112 * 22 21 20 36 36 H 1.09000 * 109.46493 * 210.02501 * 22 21 20 37 37 H 1.08996 * 109.47646 * 330.02217 * 22 21 20 38 38 H 1.09004 * 109.47012 * 270.18031 * 24 23 21 39 39 H 1.08997 * 109.47351 * 30.17520 * 24 23 21 40 40 H 1.09000 * 109.47003 * 150.18120 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3421 2.6326 0.4307 16 6 0.0602 3.2989 2.5787 17 6 -1.1597 3.8665 2.6942 18 6 -1.5484 4.5235 3.9500 19 6 -0.7575 4.6411 5.1166 20 7 -1.4513 5.2883 6.0117 21 7 -2.7006 5.6127 5.4712 22 6 -3.7685 6.3407 6.1611 23 6 -2.7537 5.1493 4.2108 24 6 -3.9143 5.2831 3.2588 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 0.7500 3.3274 3.4093 33 1 -1.8495 3.8376 1.8638 34 1 0.2455 4.2614 5.2441 35 1 -3.6525 7.4099 5.9840 36 1 -4.7360 6.0124 5.7813 37 1 -3.7117 6.1414 7.2312 38 1 -4.5797 4.4276 3.3747 39 1 -4.4604 6.2005 3.4783 40 1 -3.5421 5.3179 2.2349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183797007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:58 Heat of formation + Delta-G solvation = 44.813815 kcal Electronic energy + Delta-G solvation = -20827.309648 eV Core-core repulsion = 17643.927331 eV Total energy + Delta-G solvation = -3183.382318 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.39201 -38.98928 -35.19751 -34.23043 -33.25493 -32.27289 -31.39816 -30.56630 -27.45775 -27.03138 -26.47052 -23.63009 -22.59151 -21.08057 -19.84325 -19.25953 -18.83731 -16.98901 -16.63440 -15.93715 -15.74399 -15.17564 -14.55563 -14.34419 -14.30099 -13.90515 -13.57422 -13.39071 -13.02424 -12.81604 -12.80476 -12.58498 -12.21232 -11.92375 -11.71623 -11.43581 -11.18295 -10.89289 -10.78643 -10.68726 -10.24245 -10.15377 -10.06242 -9.54019 -9.52178 -8.96857 -8.89857 -8.42600 -7.89886 -7.57498 -6.05923 -4.14548 1.11694 1.88798 2.22255 3.02838 3.27711 3.35537 3.38554 4.17541 4.28452 4.33384 4.35732 4.56695 4.73926 4.76336 4.93508 5.02905 5.16710 5.19479 5.25414 5.43847 5.52518 5.58871 5.72989 6.02674 6.42547 6.48175 6.56091 6.62549 6.68390 6.77583 6.80795 7.14872 7.30990 7.47727 7.49654 7.59982 7.71325 7.85626 8.00692 8.27013 8.82080 8.88357 9.30953 9.53714 10.99519 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033220 B = 0.003243 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.675433 B = 8632.388496 C = 9145.545477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.706 5.706 14 C 0.534 3.466 15 O -0.562 6.562 16 C -0.218 4.218 17 C 0.011 3.989 18 C -0.223 4.223 19 C 0.075 3.925 20 N -0.304 5.304 21 N -0.369 5.369 22 C 0.099 3.901 23 C 0.105 3.895 24 C -0.096 4.096 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.020 0.980 28 H 0.030 0.970 29 H 0.097 0.903 30 H 0.263 0.737 31 H 0.388 0.612 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.189 0.811 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.592 9.626 14.431 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.521 5.521 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.352 5.352 14 C 0.323 3.677 15 O -0.445 6.445 16 C -0.240 4.240 17 C -0.011 4.011 18 C -0.234 4.234 19 C -0.112 4.112 20 N -0.124 5.124 21 N -0.149 5.149 22 C -0.043 4.043 23 C -0.024 4.024 24 C -0.155 4.155 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.220 0.780 32 H 0.134 0.866 33 H 0.149 0.851 34 H 0.206 0.794 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.213 10.047 14.863 22.888 hybrid contribution 1.429 -0.353 -0.418 1.530 sum -12.785 9.694 14.446 21.589 Atomic orbital electron populations 1.21834 0.98358 0.97840 1.01338 1.21917 0.92645 0.99873 1.02115 1.18748 0.94038 0.89177 0.81354 0.93332 1.21305 0.90904 1.38607 1.06149 0.92087 1.24893 0.98498 0.94924 0.95459 1.69914 1.34929 1.37891 1.09337 0.86424 0.85074 0.77704 0.78073 1.19755 1.20938 1.20952 1.46438 1.14763 1.55712 1.18321 1.17014 0.82925 0.79740 0.87982 1.90761 1.51549 1.61050 1.41113 1.21969 0.98258 1.04703 0.99035 1.21491 0.95596 0.90815 0.93156 1.19270 0.94786 1.12237 0.97090 1.24129 0.99906 0.96481 0.90646 1.77129 0.91443 1.21039 1.22763 1.48244 1.12922 1.43974 1.09786 1.21879 0.87261 0.96239 0.98904 1.21655 0.97432 0.96657 0.86695 1.20545 0.93927 1.02918 0.98065 0.93204 0.94103 0.96062 0.95143 0.88442 0.92717 0.78024 0.86586 0.85064 0.79418 0.90603 0.89403 0.89082 0.89636 0.90927 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.16 5.45 -26.74 -0.15 -3.30 16 3 C 0.27 6.92 2.24 -69.08 -0.15 6.76 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -25.09 11.30 55.43 0.63 -24.46 16 9 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.71 -15.09 5.01 -57.78 -0.29 -15.38 16 14 C 0.53 10.93 6.13 -14.89 -0.09 10.84 16 15 O -0.56 -13.30 13.24 5.16 0.07 -13.23 16 16 C -0.22 -3.44 9.33 -39.35 -0.37 -3.81 16 17 C 0.01 0.16 9.33 -37.18 -0.35 -0.19 16 18 C -0.22 -2.83 6.08 -105.13 -0.64 -3.47 16 19 C 0.07 0.92 11.39 -16.93 -0.19 0.73 16 20 N -0.30 -3.88 12.49 30.89 0.39 -3.49 16 21 N -0.37 -3.85 3.98 -63.24 -0.25 -4.10 16 22 C 0.10 0.55 11.06 59.85 0.66 1.22 16 23 C 0.11 1.12 7.02 -81.45 -0.57 0.55 16 24 C -0.10 -0.68 9.70 36.01 0.35 -0.33 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 26 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.39 7.24 8.50 -40.82 -0.35 6.90 16 32 H 0.12 1.51 6.93 -52.48 -0.36 1.15 16 33 H 0.13 1.93 7.02 -52.49 -0.37 1.56 16 34 H 0.19 1.88 7.31 -52.49 -0.38 1.49 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.29 7.65 -51.93 -0.40 -0.11 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.35 7.72 -51.93 -0.40 -0.05 16 40 H 0.09 0.70 7.61 -51.93 -0.40 0.30 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -33.55 333.65 -6.74 -40.30 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.71 Total: 6.20 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.58 Total: -6.72 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.47 Total: -47.44 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.55 -6.74 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183797007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.113 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds