Wall clock time and date at job start Mon Mar 30 2020 02:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21731 * 120.00062 * 359.97438 * 14 13 3 16 16 C 1.41827 * 119.99874 * 180.02562 * 14 13 3 17 17 C 1.35044 * 119.99783 * 180.02562 * 16 14 13 18 18 C 1.46968 * 119.99610 * 179.97438 * 17 16 14 19 19 C 1.41431 * 126.44723 * 0.02562 * 18 17 16 20 20 N 1.30440 * 108.04434 * 179.97438 * 19 18 17 21 21 N 1.39930 * 108.96131 * 359.97438 * 20 19 18 22 22 C 1.46503 * 125.73800 * 180.02562 * 21 20 19 23 23 C 1.34391 * 108.51563 * 359.74917 * 21 20 19 24 24 C 1.50700 * 126.31879 * 180.24498 * 23 21 20 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.08003 * 120.00082 * 359.97438 * 16 14 13 33 33 H 1.07995 * 120.00133 * 359.97438 * 17 16 14 34 34 H 1.08000 * 125.97856 * 359.97438 * 19 18 17 35 35 H 1.08996 * 109.46987 * 90.03112 * 22 21 20 36 36 H 1.09000 * 109.46493 * 210.02501 * 22 21 20 37 37 H 1.08996 * 109.47646 * 330.02217 * 22 21 20 38 38 H 1.09004 * 109.47012 * 270.18031 * 24 23 21 39 39 H 1.08997 * 109.47351 * 30.17520 * 24 23 21 40 40 H 1.09000 * 109.47003 * 150.18120 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3421 2.6326 0.4307 16 6 0.0602 3.2989 2.5787 17 6 -1.1597 3.8665 2.6942 18 6 -1.5484 4.5235 3.9500 19 6 -0.7575 4.6411 5.1166 20 7 -1.4513 5.2883 6.0117 21 7 -2.7006 5.6127 5.4712 22 6 -3.7685 6.3407 6.1611 23 6 -2.7537 5.1493 4.2108 24 6 -3.9143 5.2831 3.2588 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 0.7500 3.3274 3.4093 33 1 -1.8495 3.8376 1.8638 34 1 0.2455 4.2614 5.2441 35 1 -3.6525 7.4099 5.9840 36 1 -4.7360 6.0124 5.7813 37 1 -3.7117 6.1414 7.2312 38 1 -4.5797 4.4276 3.3747 39 1 -4.4604 6.2005 3.4783 40 1 -3.5421 5.3179 2.2349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183797007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:58 Heat of formation + Delta-G solvation = 22.316000 kcal Electronic energy + Delta-G solvation = -20828.285227 eV Core-core repulsion = 17643.927331 eV Total energy + Delta-G solvation = -3184.357896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.24484 -40.65254 -37.01013 -35.27913 -34.22035 -34.13721 -32.87630 -31.86733 -29.11171 -27.86539 -27.52172 -25.25938 -24.13767 -22.29683 -21.32429 -20.66725 -20.11211 -18.66120 -17.69428 -17.28105 -16.97835 -16.65299 -16.14400 -15.97901 -15.35492 -15.10518 -14.70431 -14.45506 -14.12508 -14.04527 -13.79199 -13.46708 -13.40240 -13.30506 -13.14088 -12.92714 -12.83042 -12.75943 -12.67371 -12.11604 -12.00180 -11.60341 -11.56309 -11.22449 -10.99447 -10.64671 -10.47336 -10.32101 -9.54894 -8.79340 -8.13083 -6.29924 0.04194 0.95920 1.45178 1.46139 1.54085 1.58300 1.95451 2.40710 2.82511 2.92138 3.16407 3.54873 3.66065 4.02898 4.12726 4.30798 4.39326 4.40385 4.53951 4.57513 4.62484 4.65903 4.70555 4.74131 4.84028 4.96675 5.04690 5.12452 5.28551 5.46782 5.50405 5.54332 5.59594 5.62812 5.72290 5.86302 6.00884 6.03899 6.22342 6.62895 6.79367 7.14551 7.37723 7.73185 8.92625 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033220 B = 0.003243 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.675433 B = 8632.388496 C = 9145.545477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.706 5.706 14 C 0.534 3.466 15 O -0.604 6.604 16 C -0.248 4.248 17 C 0.047 3.953 18 C -0.261 4.261 19 C 0.072 3.928 20 N -0.333 5.333 21 N -0.367 5.367 22 C 0.085 3.915 23 C 0.122 3.878 24 C -0.099 4.099 25 H 0.026 0.974 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.264 0.736 31 H 0.402 0.598 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.203 0.797 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.344 10.623 16.470 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.354 5.354 14 C 0.326 3.674 15 O -0.489 6.489 16 C -0.269 4.269 17 C 0.025 3.975 18 C -0.272 4.272 19 C -0.114 4.114 20 N -0.152 5.152 21 N -0.146 5.146 22 C -0.054 4.054 23 C -0.010 4.010 24 C -0.157 4.157 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.220 0.780 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.969 11.069 16.968 25.190 hybrid contribution 1.440 -0.527 -0.972 1.815 sum -13.529 10.542 15.997 23.454 Atomic orbital electron populations 1.21663 0.96928 0.98980 1.00339 1.21770 0.93851 0.99215 1.01089 1.18331 0.93495 0.89171 0.81654 0.98498 1.21638 0.91597 1.38638 1.06597 0.91218 1.25783 1.03313 0.94453 0.95056 1.70064 1.36933 1.38562 1.09867 0.85327 0.79189 0.77816 0.78167 1.18528 1.20403 1.20994 1.46206 1.15737 1.56074 1.17376 1.17640 0.81897 0.78878 0.88935 1.90734 1.52533 1.62677 1.42957 1.21718 0.99924 1.07245 0.98026 1.21530 0.94421 0.88090 0.93417 1.19267 0.96460 1.14707 0.96760 1.24431 1.00594 0.95997 0.90342 1.77091 0.92721 1.21902 1.23518 1.48673 1.12941 1.43202 1.09823 1.22321 0.87108 0.96808 0.99145 1.22191 0.97476 0.94228 0.87072 1.20730 0.93034 1.05107 0.96780 0.95524 0.93712 0.93693 0.94261 0.91104 0.92654 0.76375 0.83878 0.85811 0.78016 0.89059 0.86465 0.88575 0.88053 0.87983 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.51 71.98 0.61 -5.09 16 2 C -0.12 -6.15 5.45 30.59 0.17 -5.98 16 3 C 0.28 14.76 2.24 44.24 0.10 14.86 16 4 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 5 C -0.55 -29.79 8.73 25.60 0.22 -29.57 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.01 0.76 5.29 84.65 0.45 1.20 16 8 N -0.92 -53.46 11.30 21.45 0.24 -53.22 16 9 Si 0.97 43.00 29.54 68.60 2.03 45.02 16 10 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.71 -30.78 5.01 -454.92 -2.28 -33.06 16 14 C 0.53 22.32 6.13 85.13 0.52 22.84 16 15 O -0.60 -29.65 13.24 -4.45 -0.06 -29.70 16 16 C -0.25 -7.75 9.33 22.42 0.21 -7.54 16 17 C 0.05 1.32 9.33 23.82 0.22 1.54 16 18 C -0.26 -6.24 6.08 -20.19 -0.12 -6.36 16 19 C 0.07 1.68 11.39 85.69 0.98 2.66 16 20 N -0.33 -7.90 12.49 -56.18 -0.70 -8.61 16 21 N -0.37 -6.68 3.98 -354.00 -1.41 -8.09 16 22 C 0.09 0.67 11.06 127.77 1.41 2.08 16 23 C 0.12 2.30 7.02 42.18 0.30 2.60 16 24 C -0.10 -1.08 9.70 71.24 0.69 -0.39 16 25 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 26 H 0.04 2.03 5.64 -2.39 -0.01 2.02 16 27 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 30 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 31 H 0.40 15.00 8.50 -92.71 -0.79 14.21 16 32 H 0.14 3.58 6.93 -2.91 -0.02 3.56 16 33 H 0.12 3.62 7.02 -2.91 -0.02 3.60 16 34 H 0.20 3.76 7.31 -2.91 -0.02 3.74 16 35 H 0.09 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.12 0.24 7.65 -2.39 -0.02 0.23 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.54 7.72 -2.39 -0.02 0.52 16 40 H 0.09 1.13 7.61 -2.39 -0.02 1.11 16 Total: -1.00 -74.97 333.65 3.84 -71.13 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.26 Total: 23.68 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.76 Total: -7.15 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -4.15 Total: -102.98 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.06 Total: -29.70 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.97 3.84 -71.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183797007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.449 kcal (2) G-P(sol) polarization free energy of solvation -74.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds