Wall clock time and date at job start Mon Mar 30 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47112 * 60.00201 * 9 7 5 11 11 H 1.48503 * 109.47000 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46939 * 299.99464 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21595 * 119.99906 * 359.97438 * 14 13 3 16 16 C 1.47542 * 120.00108 * 179.97438 * 14 13 3 17 17 C 1.40351 * 120.47700 * 179.97438 * 16 14 13 18 18 C 1.36850 * 118.49250 * 180.02562 * 17 16 14 19 19 C 1.39397 * 119.38303 * 359.97438 * 18 17 16 20 20 N 1.38452 * 119.54162 * 179.97438 * 19 18 17 21 21 C 1.46503 * 119.99862 * 5.00803 * 20 19 18 22 22 C 1.46502 * 120.00070 * 185.00044 * 20 19 18 23 23 N 1.32604 * 120.91798 * 0.02562 * 19 18 17 24 24 C 1.31680 * 121.63844 * 359.69874 * 23 19 18 25 25 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 29 29 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 30 30 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 32 32 H 1.08001 * 120.74862 * 359.97438 * 17 16 14 33 33 H 1.08001 * 120.30847 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.47186 * 89.99670 * 21 20 19 35 35 H 1.08997 * 109.46794 * 209.99589 * 21 20 19 36 36 H 1.08997 * 109.47156 * 329.99654 * 21 20 19 37 37 H 1.09000 * 109.46450 * 90.00594 * 22 20 19 38 38 H 1.08997 * 109.47072 * 210.00367 * 22 20 19 39 39 H 1.08997 * 109.47241 * 330.00482 * 22 20 19 40 40 H 1.08003 * 119.74191 * 180.28933 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2170 2.6505 12 1 6.5966 0.1453 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3416 2.6318 -0.4321 16 6 0.0450 3.3243 -2.6276 17 6 -1.2203 3.9174 -2.7587 18 6 -1.5399 4.5180 -3.9461 19 6 -0.6075 4.5240 -4.9823 20 7 -0.9277 5.1303 -6.1852 21 6 -2.1935 5.8543 -6.3265 22 6 -0.0006 5.0479 -7.3166 23 7 0.5814 3.9563 -4.8324 24 6 0.9308 3.3726 -3.7049 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0608 2.9500 31 1 2.2720 2.1231 -1.9978 32 1 -1.9259 3.8994 -1.9413 33 1 -2.5056 4.9830 -4.0791 34 1 -2.0480 6.8981 -6.0482 35 1 -2.5306 5.7978 -7.3615 36 1 -2.9433 5.4056 -5.6750 37 1 -0.2301 4.1632 -7.9105 38 1 -0.1038 5.9385 -7.9364 39 1 1.0217 4.9807 -6.9445 40 1 1.9090 2.9237 -3.6147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183842752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:39 Heat of formation + Delta-G solvation = 9.885686 kcal Electronic energy + Delta-G solvation = -21295.965890 eV Core-core repulsion = 18111.068975 eV Total energy + Delta-G solvation = -3184.896915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46302 -38.70394 -36.52678 -34.99977 -32.55350 -32.36619 -31.27312 -30.00759 -28.46815 -27.03940 -25.59181 -23.24427 -23.09526 -21.99614 -20.28739 -19.33360 -18.01948 -17.18489 -16.67852 -15.75419 -15.53841 -15.18053 -14.86777 -14.56415 -14.47310 -14.04733 -13.48570 -13.29187 -12.90674 -12.87746 -12.70269 -12.47048 -12.31706 -12.10224 -11.89961 -11.46659 -11.20549 -10.96666 -10.79166 -10.30178 -10.14116 -9.99207 -9.77938 -9.63678 -9.53301 -9.02788 -8.90470 -8.45899 -7.84999 -7.58137 -6.08953 -4.18250 1.08607 1.43138 2.73137 3.28380 3.33519 3.34804 3.48141 4.14043 4.28560 4.39253 4.42379 4.75351 4.89664 4.99598 5.11023 5.14646 5.20547 5.22487 5.34852 5.41558 5.56904 5.67927 5.72482 6.00523 6.36842 6.44189 6.50000 6.51839 6.71483 6.72511 7.09886 7.18298 7.25115 7.41537 7.49908 7.66149 7.78179 7.94573 8.06072 8.22050 8.71357 8.81715 9.18043 9.49092 10.96355 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.003899 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.036682 B = 7179.348661 C = 7885.218174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.553 3.447 15 O -0.550 6.550 16 C -0.235 4.235 17 C 0.019 3.981 18 C -0.249 4.249 19 C 0.410 3.590 20 N -0.616 5.616 21 C 0.093 3.907 22 C 0.098 3.902 23 N -0.546 5.546 24 C 0.182 3.818 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.386 0.614 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 8.506 -16.654 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.352 5.352 14 C 0.339 3.661 15 O -0.430 6.430 16 C -0.243 4.243 17 C -0.007 4.007 18 C -0.273 4.273 19 C 0.175 3.825 20 N -0.329 5.329 21 C -0.050 4.050 22 C -0.045 4.045 23 N -0.264 5.264 24 C 0.023 3.977 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.680 8.474 -16.641 20.593 hybrid contribution 0.722 -0.042 0.354 0.805 sum -7.958 8.432 -16.287 19.992 Atomic orbital electron populations 1.21844 0.98367 0.97985 1.01281 1.21934 0.92625 0.99791 1.02273 1.18791 0.94157 0.89180 0.80915 0.93190 1.21206 0.90733 1.39063 1.06312 0.92108 1.24880 0.98558 0.94816 0.95381 1.69892 1.35181 1.37573 1.09329 0.86520 0.84926 0.78306 0.77421 1.20194 1.21178 1.20149 1.46431 1.14380 1.55820 1.18529 1.17841 0.82857 0.78964 0.86455 1.90732 1.51610 1.60623 1.40085 1.21001 0.97429 1.08449 0.97424 1.21172 0.94657 0.88782 0.96089 1.21116 1.01271 1.10298 0.94619 1.18461 0.89326 0.88821 0.85884 1.46104 1.20685 1.56373 1.09781 1.21736 0.84795 0.95939 1.02515 1.21585 0.94724 1.00566 0.87671 1.67191 1.16983 1.15948 1.26247 1.22717 0.98189 0.90598 0.86207 0.93149 0.94223 0.95922 0.95021 0.88289 0.92536 0.78095 0.83876 0.84800 0.92857 0.91049 0.90838 0.93433 0.91986 0.89955 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.76 11.30 55.43 0.63 -24.13 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.70 -14.81 4.97 -55.97 -0.28 -15.09 16 14 C 0.55 11.35 6.34 -12.46 -0.08 11.28 16 15 O -0.55 -13.00 13.54 5.28 0.07 -12.93 16 16 C -0.23 -3.93 5.89 -104.82 -0.62 -4.54 16 17 C 0.02 0.28 9.65 -39.29 -0.38 -0.10 16 18 C -0.25 -3.10 9.20 -39.65 -0.36 -3.46 16 19 C 0.41 5.38 7.36 -155.28 -1.14 4.23 16 20 N -0.62 -6.28 3.37 -189.70 -0.64 -6.92 16 21 C 0.09 0.62 10.27 59.85 0.61 1.23 16 22 C 0.10 0.84 10.49 59.85 0.63 1.46 16 23 N -0.55 -7.94 9.04 -12.14 -0.11 -8.05 16 24 C 0.18 2.73 10.71 -17.12 -0.18 2.55 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 26 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 7.05 6.59 -40.82 -0.27 6.78 16 32 H 0.14 2.06 7.73 -52.49 -0.41 1.65 16 33 H 0.13 1.26 5.99 -52.49 -0.31 0.95 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 36 H 0.07 0.44 5.95 -51.93 -0.31 0.14 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 39 H 0.08 0.82 7.28 -51.93 -0.38 0.45 16 40 H 0.16 2.12 6.41 -52.48 -0.34 1.78 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -31.55 324.93 -7.84 -39.39 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.48 Total: 6.67 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.90 Total: 0.54 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.40 Total: -54.20 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.55 -7.84 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183842752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.278 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds