Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46827 * 299.99551 * 9 7 5 12 12 H 1.48494 * 109.47116 * 59.99840 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21595 * 119.99683 * 359.97438 * 14 13 3 16 16 C 1.47542 * 120.00156 * 180.02562 * 14 13 3 17 17 C 1.40338 * 120.47539 * 179.97438 * 16 14 13 18 18 C 1.36861 * 118.49397 * 179.97438 * 17 16 14 19 19 C 1.39397 * 119.37624 * 359.97438 * 18 17 16 20 20 N 1.38463 * 119.53996 * 179.97438 * 19 18 17 21 21 C 1.46496 * 119.99613 * 4.99983 * 20 19 18 22 22 C 1.46495 * 119.99835 * 185.00204 * 20 19 18 23 23 N 1.32607 * 120.92237 * 0.02562 * 19 18 17 24 24 C 1.31675 * 121.63840 * 359.72340 * 23 19 18 25 25 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 26 26 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 27 27 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 29 29 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 30 30 H 0.97001 * 119.99819 * 354.83996 * 8 7 5 31 31 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 32 32 H 1.07997 * 120.76011 * 359.97438 * 17 16 14 33 33 H 1.07994 * 120.31472 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.47308 * 60.00823 * 21 20 19 35 35 H 1.09008 * 109.46651 * 179.97438 * 21 20 19 36 36 H 1.08994 * 109.47398 * 299.99930 * 21 20 19 37 37 H 1.09003 * 109.47339 * 89.99802 * 22 20 19 38 38 H 1.09002 * 109.47387 * 209.99870 * 22 20 19 39 39 H 1.08995 * 109.47433 * 330.00081 * 22 20 19 40 40 H 1.08001 * 119.74599 * 180.26694 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0025 -0.1666 -2.6010 12 1 2.5329 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3372 2.6312 0.4571 16 6 0.0689 3.3161 2.6515 17 6 -1.1946 3.9096 2.7954 18 6 -1.5036 4.5065 3.9876 19 6 -0.5626 4.5074 5.0160 20 7 -0.8714 5.1108 6.2234 21 6 -2.2160 5.6455 6.4522 22 6 0.1464 5.2145 7.2719 23 7 0.6246 3.9392 4.8539 24 6 0.9600 3.3501 3.7251 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.9549 0.8550 -0.5314 31 1 2.2901 2.1167 1.9977 32 1 -1.9071 3.8956 1.9839 33 1 -2.4673 4.9725 4.1303 34 1 -2.9465 4.8412 6.3654 35 1 -2.2697 6.0783 7.4512 36 1 -2.4323 6.4144 5.7106 37 1 0.6958 6.1486 7.1539 38 1 -0.3357 5.1976 8.2493 39 1 0.8367 4.3747 7.1926 40 1 1.9338 2.8932 3.6278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183842768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = 7.836845 kcal Electronic energy + Delta-G solvation = -21367.702430 eV Core-core repulsion = 18182.716670 eV Total energy + Delta-G solvation = -3184.985759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54054 -38.87866 -36.61094 -35.20497 -32.59329 -32.44037 -31.70831 -30.19093 -28.50216 -27.26314 -25.66382 -23.33006 -22.54790 -22.04397 -20.51816 -19.53740 -18.21679 -17.55089 -16.81571 -16.43494 -15.60192 -15.31749 -14.87882 -14.72624 -14.38040 -13.88443 -13.45117 -13.35581 -13.03604 -12.94985 -12.72776 -12.55375 -12.45476 -12.34462 -12.20849 -12.08768 -11.67482 -10.87388 -10.65427 -10.40762 -10.07422 -9.85358 -9.83377 -9.73606 -9.50821 -9.11709 -8.97647 -8.31269 -8.08810 -7.69491 -6.55331 -4.19137 1.00149 1.36041 2.67682 3.35984 3.41372 3.47248 3.61950 4.02599 4.16827 4.36363 4.44466 4.66901 4.81021 4.99240 5.03033 5.10549 5.17083 5.19581 5.28267 5.36876 5.42559 5.62250 5.66712 5.92018 6.12217 6.14114 6.24952 6.34345 6.43385 6.66745 6.74676 6.83769 6.99403 7.09921 7.11844 7.40632 7.44949 7.68903 7.99472 8.26229 8.51350 8.73728 9.01841 9.49975 10.85431 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032114 B = 0.003967 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.680473 B = 7057.383260 C = 7559.650921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.248 3.752 4 H 0.043 0.957 5 C -0.616 4.616 6 H 0.062 0.938 7 C 0.039 3.961 8 N -0.899 5.899 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.268 1.268 12 H -0.280 1.280 13 N -0.697 5.697 14 C 0.555 3.445 15 O -0.552 6.552 16 C -0.237 4.237 17 C 0.020 3.980 18 C -0.245 4.245 19 C 0.411 3.589 20 N -0.615 5.615 21 C 0.097 3.903 22 C 0.097 3.903 23 N -0.545 5.545 24 C 0.184 3.816 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.269 0.731 31 H 0.390 0.610 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 8.087 15.654 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.144 3.856 4 H 0.060 0.940 5 C -0.654 4.654 6 H 0.080 0.920 7 C -0.168 4.168 8 N -0.532 5.532 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.345 5.345 14 C 0.341 3.659 15 O -0.433 6.433 16 C -0.245 4.245 17 C -0.006 4.006 18 C -0.270 4.270 19 C 0.176 3.824 20 N -0.328 5.328 21 C -0.047 4.047 22 C -0.046 4.046 23 N -0.263 5.263 24 C 0.024 3.976 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.224 0.776 32 H 0.162 0.838 33 H 0.151 0.849 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.746 7.640 14.270 21.236 hybrid contribution -0.235 0.599 1.442 1.579 sum -13.981 8.239 15.711 22.588 Atomic orbital electron populations 1.21885 0.97391 0.98818 1.02003 1.22359 0.93823 0.99759 1.01849 1.19061 0.95787 0.88556 0.82175 0.93972 1.22105 0.89715 1.49446 1.04159 0.92027 1.25675 0.97538 0.92361 1.01185 1.70876 1.07075 1.40985 1.34299 0.84115 0.75493 0.77737 0.75849 1.20988 1.19452 1.20616 1.46178 1.14356 1.55865 1.18093 1.17895 0.82699 0.78766 0.86569 1.90721 1.51117 1.60685 1.40747 1.20915 0.97442 1.08918 0.97256 1.21160 0.94592 0.88819 0.96058 1.21078 1.01666 1.09945 0.94277 1.18461 0.89600 0.88500 0.85845 1.46129 1.12454 1.61412 1.12854 1.21696 0.82327 0.98629 1.02021 1.21630 0.91543 1.02600 0.88863 1.67196 1.17853 1.15373 1.25847 1.22713 0.98052 0.90519 0.86290 0.93232 0.93021 0.95142 0.91288 0.93066 0.92125 0.77571 0.83847 0.84888 0.92316 0.90341 0.92280 0.93376 0.91909 0.89966 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.53 37.15 0.32 -2.64 16 2 C -0.14 -3.14 5.27 -26.73 -0.14 -3.28 16 3 C 0.25 5.95 1.82 -69.08 -0.13 5.83 16 4 H 0.04 1.10 6.25 -51.93 -0.32 0.78 16 5 C -0.62 -16.70 9.01 -34.44 -0.31 -17.01 16 6 H 0.06 1.74 7.96 -52.49 -0.42 1.32 16 7 C 0.04 1.10 5.32 -17.82 -0.09 1.00 16 8 N -0.90 -26.85 13.70 55.43 0.76 -26.09 16 9 Si 1.04 25.22 26.27 -169.99 -4.47 20.75 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.07 5.67 56.52 0.32 -5.75 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.70 -14.33 4.98 -55.97 -0.28 -14.60 16 14 C 0.55 10.94 6.36 -12.47 -0.08 10.87 16 15 O -0.55 -12.34 13.55 5.28 0.07 -12.27 16 16 C -0.24 -3.85 5.89 -104.82 -0.62 -4.47 16 17 C 0.02 0.28 9.65 -39.29 -0.38 -0.10 16 18 C -0.25 -2.96 9.26 -39.65 -0.37 -3.33 16 19 C 0.41 5.27 7.36 -155.27 -1.14 4.13 16 20 N -0.62 -6.11 3.37 -189.70 -0.64 -6.75 16 21 C 0.10 0.61 9.39 59.84 0.56 1.17 16 22 C 0.10 0.81 10.46 59.84 0.63 1.43 16 23 N -0.55 -7.82 9.04 -12.14 -0.11 -7.93 16 24 C 0.18 2.71 10.71 -17.12 -0.18 2.53 16 25 H 0.05 1.02 5.63 -51.93 -0.29 0.72 16 26 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.62 4.74 -51.93 -0.25 1.37 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.27 7.93 8.73 -40.82 -0.36 7.58 16 31 H 0.39 7.16 6.57 -40.82 -0.27 6.89 16 32 H 0.14 1.96 7.73 -52.49 -0.41 1.56 16 33 H 0.13 1.22 6.66 -52.49 -0.35 0.87 16 34 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 35 H 0.08 0.32 7.79 -51.92 -0.40 -0.08 16 36 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 39 H 0.08 0.81 7.28 -51.93 -0.38 0.43 16 40 H 0.16 2.12 6.41 -52.49 -0.34 1.78 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -32.54 321.60 -7.32 -39.86 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.57 Total: 6.05 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.94 Total: -3.86 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.27 Total: -55.38 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -4.47 Total: 20.75 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.54 -7.32 -39.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183842768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.695 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds