Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 H 1.08998 * 109.46991 * 305.54790 * 3 2 1 5 5 C 1.50703 * 109.46993 * 185.55161 * 3 2 1 6 6 H 1.07999 * 119.99715 * 245.60397 * 5 3 2 7 7 C 1.37879 * 120.00117 * 65.60375 * 5 3 2 8 8 N 1.31512 * 119.99978 * 196.28070 * 7 5 3 9 9 Si 1.86805 * 119.99966 * 16.28830 * 7 5 3 10 10 H 1.48497 * 109.46898 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.46827 * 299.99551 * 9 7 5 12 12 H 1.48494 * 109.47116 * 59.99840 * 9 7 5 13 13 N 1.46499 * 109.47140 * 65.55383 * 3 2 1 14 14 C 1.34781 * 119.99694 * 275.00048 * 13 3 2 15 15 O 1.21595 * 119.99683 * 359.97438 * 14 13 3 16 16 C 1.47542 * 120.00156 * 180.02562 * 14 13 3 17 17 C 1.40338 * 120.47539 * 179.97438 * 16 14 13 18 18 C 1.36861 * 118.49397 * 179.97438 * 17 16 14 19 19 C 1.39397 * 119.37624 * 359.97438 * 18 17 16 20 20 N 1.38463 * 119.53996 * 179.97438 * 19 18 17 21 21 C 1.46496 * 119.99613 * 4.99983 * 20 19 18 22 22 C 1.46495 * 119.99835 * 185.00204 * 20 19 18 23 23 N 1.32607 * 120.92237 * 0.02562 * 19 18 17 24 24 C 1.31675 * 121.63840 * 359.72340 * 23 19 18 25 25 H 1.08999 * 109.47111 * 300.00221 * 1 2 3 26 26 H 1.09006 * 109.47148 * 60.00076 * 1 2 3 27 27 H 1.08996 * 109.47553 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47111 * 239.99779 * 2 1 3 29 29 H 1.09000 * 109.47249 * 120.00370 * 2 1 3 30 30 H 0.97001 * 119.99819 * 354.83996 * 8 7 5 31 31 H 0.96993 * 120.00114 * 95.00036 * 13 3 2 32 32 H 1.07997 * 120.76011 * 359.97438 * 17 16 14 33 33 H 1.07994 * 120.31472 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.47308 * 60.00823 * 21 20 19 35 35 H 1.09008 * 109.46651 * 179.97438 * 21 20 19 36 36 H 1.08994 * 109.47398 * 299.99930 * 21 20 19 37 37 H 1.09003 * 109.47339 * 89.99802 * 22 20 19 38 38 H 1.09002 * 109.47387 * 209.99870 * 22 20 19 39 39 H 1.08995 * 109.47433 * 330.00081 * 22 20 19 40 40 H 1.08001 * 119.74599 * 180.26694 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5978 1.9842 -0.8361 5 6 3.5407 1.4446 -0.1375 6 1 4.1567 1.8041 0.6736 7 6 4.1273 0.9878 -1.2986 8 7 5.4073 0.6860 -1.3140 9 14 3.1041 0.7977 -2.8498 10 1 3.9637 0.2944 -3.9512 11 1 2.0025 -0.1666 -2.6010 12 1 2.5329 2.1144 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4476 2.6600 1.3854 15 8 -0.3372 2.6312 0.4571 16 6 0.0689 3.3161 2.6515 17 6 -1.1946 3.9096 2.7954 18 6 -1.5036 4.5065 3.9876 19 6 -0.5626 4.5074 5.0160 20 7 -0.8714 5.1108 6.2234 21 6 -2.2160 5.6455 6.4522 22 6 0.1464 5.2145 7.2719 23 7 0.6246 3.9392 4.8539 24 6 0.9600 3.3501 3.7251 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.9549 0.8550 -0.5314 31 1 2.2901 2.1167 1.9977 32 1 -1.9071 3.8956 1.9839 33 1 -2.4673 4.9725 4.1303 34 1 -2.9465 4.8412 6.3654 35 1 -2.2697 6.0783 7.4512 36 1 -2.4323 6.4144 5.7106 37 1 0.6958 6.1486 7.1539 38 1 -0.3357 5.1976 8.2493 39 1 0.8367 4.3747 7.1926 40 1 1.9338 2.8932 3.6278 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183842768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = -13.961814 kcal Electronic energy + Delta-G solvation = -21368.647691 eV Core-core repulsion = 18182.716670 eV Total energy + Delta-G solvation = -3185.931020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.67287 -40.33444 -37.54596 -36.96079 -34.48873 -33.58888 -33.38076 -31.39168 -29.17150 -29.03393 -26.70218 -24.38322 -24.32277 -23.32572 -21.97462 -21.21999 -19.99523 -18.77639 -18.08216 -17.69660 -16.96217 -16.44667 -16.19761 -15.89966 -15.61102 -15.26531 -14.87696 -14.56809 -14.52115 -14.39934 -14.13349 -13.86166 -13.60694 -13.52241 -13.43839 -13.12342 -12.75572 -12.66908 -12.46082 -12.27650 -11.76697 -11.40757 -11.12672 -11.07164 -10.97951 -10.82268 -10.46725 -10.40275 -9.80947 -8.79079 -8.61662 -6.43079 -0.13353 0.31404 1.46667 1.51929 1.71113 1.91320 2.01814 2.42508 2.49673 2.94865 3.02961 3.39392 3.85423 3.92099 3.96438 4.12114 4.33925 4.35354 4.42694 4.49035 4.52042 4.57091 4.63722 4.76424 4.85116 4.89488 4.92634 4.97736 5.11452 5.19838 5.24120 5.34250 5.42379 5.56860 5.67746 5.70818 5.90818 6.02194 6.22473 6.54145 6.85413 6.98359 7.29665 7.44789 8.61098 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032114 B = 0.003967 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.680473 B = 7057.383260 C = 7559.650921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C 0.252 3.748 4 H 0.024 0.976 5 C -0.613 4.613 6 H 0.040 0.960 7 C -0.005 4.005 8 N -0.929 5.929 9 Si 1.071 2.929 10 H -0.283 1.283 11 H -0.242 1.242 12 H -0.275 1.275 13 N -0.701 5.701 14 C 0.558 3.442 15 O -0.582 6.582 16 C -0.263 4.263 17 C 0.016 3.984 18 C -0.235 4.235 19 C 0.405 3.595 20 N -0.611 5.611 21 C 0.086 3.914 22 C 0.092 3.908 23 N -0.561 5.561 24 C 0.187 3.813 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.257 0.743 31 H 0.399 0.601 32 H 0.146 0.854 33 H 0.167 0.833 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.397 8.870 17.341 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.148 3.852 4 H 0.042 0.958 5 C -0.651 4.651 6 H 0.058 0.942 7 C -0.206 4.206 8 N -0.564 5.564 9 Si 0.894 3.106 10 H -0.208 1.208 11 H -0.167 1.167 12 H -0.200 1.200 13 N -0.349 5.349 14 C 0.346 3.654 15 O -0.464 6.464 16 C -0.271 4.271 17 C -0.010 4.010 18 C -0.259 4.259 19 C 0.169 3.831 20 N -0.322 5.322 21 C -0.055 4.055 22 C -0.051 4.051 23 N -0.279 5.279 24 C 0.027 3.973 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.235 0.765 32 H 0.164 0.836 33 H 0.184 0.816 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.332 8.454 16.036 24.400 hybrid contribution 0.523 0.503 1.159 1.368 sum -15.809 8.957 17.195 25.016 Atomic orbital electron populations 1.21761 0.95534 1.00328 1.01415 1.22252 0.95395 0.98269 1.01565 1.18770 0.93461 0.89735 0.83258 0.95844 1.22300 0.91499 1.48072 1.03259 0.94221 1.26823 0.97716 0.92062 1.03966 1.70979 1.08040 1.43372 1.33990 0.83727 0.75197 0.78673 0.73048 1.20842 1.16672 1.20032 1.46014 1.15320 1.56330 1.17275 1.18323 0.81690 0.77903 0.87463 1.90689 1.51779 1.61827 1.42140 1.20617 0.99099 1.11364 0.96043 1.21260 0.93819 0.88844 0.97084 1.21321 1.02741 1.08918 0.92958 1.18866 0.89206 0.87906 0.87163 1.46545 1.14071 1.59765 1.11843 1.22016 0.80401 0.99180 1.03947 1.21758 0.91487 1.01955 0.89866 1.67257 1.18991 1.16232 1.25467 1.22747 0.98035 0.90289 0.86182 0.93483 0.93964 0.92495 0.92127 0.92767 0.93316 0.76549 0.83644 0.81597 0.91424 0.87741 0.91353 0.93043 0.88823 0.91758 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 8.53 71.98 0.61 -4.67 16 2 C -0.14 -6.05 5.27 30.59 0.16 -5.88 16 3 C 0.25 12.21 1.82 44.25 0.08 12.29 16 4 H 0.02 1.24 6.25 -2.39 -0.01 1.23 16 5 C -0.61 -33.93 9.01 25.60 0.23 -33.70 16 6 H 0.04 2.32 7.96 -2.91 -0.02 2.29 16 7 C -0.01 -0.29 5.32 84.66 0.45 0.16 16 8 N -0.93 -56.74 13.70 21.45 0.29 -56.44 16 9 Si 1.07 50.87 26.27 68.60 1.80 52.67 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.24 -10.43 5.67 99.48 0.56 -9.86 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.70 -29.13 4.98 -449.25 -2.24 -31.37 16 14 C 0.56 22.08 6.36 86.70 0.55 22.64 16 15 O -0.58 -26.04 13.55 -4.01 -0.05 -26.10 16 16 C -0.26 -8.43 5.89 -19.99 -0.12 -8.54 16 17 C 0.02 0.43 9.65 22.46 0.22 0.65 16 18 C -0.24 -5.07 9.26 22.23 0.21 -4.86 16 19 C 0.41 9.48 7.36 133.25 0.98 10.46 16 20 N -0.61 -10.18 3.37 -754.10 -2.54 -12.73 16 21 C 0.09 0.72 9.39 127.77 1.20 1.92 16 22 C 0.09 1.29 10.46 127.77 1.34 2.62 16 23 N -0.56 -15.47 9.04 -192.31 -1.74 -17.21 16 24 C 0.19 5.48 10.71 85.04 0.91 6.39 16 25 H 0.05 1.88 5.63 -2.39 -0.01 1.87 16 26 H 0.04 1.74 7.88 -2.38 -0.02 1.72 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 2.78 4.74 -2.39 -0.01 2.76 16 29 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.26 15.77 8.73 -92.71 -0.81 14.96 16 31 H 0.40 14.95 6.57 -92.71 -0.61 14.34 16 32 H 0.15 3.82 7.73 -2.91 -0.02 3.80 16 33 H 0.17 2.39 6.66 -2.91 -0.02 2.37 16 34 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 35 H 0.10 0.37 7.79 -2.38 -0.02 0.35 16 36 H 0.07 0.50 7.71 -2.39 -0.02 0.48 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 0.74 7.92 -2.39 -0.02 0.72 16 39 H 0.06 1.16 7.28 -2.39 -0.02 1.14 16 40 H 0.16 4.41 6.41 -2.91 -0.02 4.39 16 Total: -1.00 -70.95 321.60 2.61 -68.35 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.27 Total: 23.38 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 6.82 Total: -0.55 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -6.23 Total: -117.75 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.80 Total: 52.67 kcal Total: -70.95 2.61 -68.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183842768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.384 kcal (2) G-P(sol) polarization free energy of solvation -70.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds