Wall clock time and date at job start Mon Mar 30 2020 03:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47273 * 2 1 4 4 N 1.46503 * 109.47005 * 180.02562 * 3 2 1 5 5 C 1.36784 * 119.99825 * 83.08857 * 4 3 2 6 6 H 1.08004 * 120.00082 * 171.20428 * 5 4 3 7 7 C 1.39110 * 120.00379 * 351.19775 * 5 4 3 8 8 N 1.31331 * 119.99666 * 1.39349 * 7 5 4 9 9 Si 1.86793 * 120.00313 * 181.39993 * 7 5 4 10 10 H 1.48504 * 109.47329 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47616 * 119.99857 * 9 7 5 12 12 H 1.48500 * 109.46874 * 239.99992 * 9 7 5 13 13 C 1.34773 * 119.99817 * 263.08162 * 4 3 2 14 14 O 1.21568 * 120.00055 * 184.19328 * 13 4 3 15 15 C 1.47979 * 120.00196 * 4.19703 * 13 4 3 16 16 C 1.40203 * 121.15403 * 299.50805 * 15 13 4 17 17 C 1.38461 * 117.81558 * 179.97438 * 16 15 13 18 18 C 1.50697 * 120.00966 * 179.97438 * 17 16 15 19 19 N 1.31936 * 119.97551 * 0.02562 * 17 16 15 20 20 N 1.28276 * 122.54278 * 359.73419 * 19 17 16 21 21 C 1.31900 * 122.33319 * 0.54185 * 20 19 17 22 22 C 1.50692 * 120.18175 * 179.74839 * 21 20 19 23 23 C 1.53000 * 109.47224 * 268.83407 * 22 21 20 24 24 H 1.08999 * 109.47111 * 299.99879 * 1 2 3 25 25 H 1.09000 * 109.46832 * 59.99598 * 1 2 3 26 26 H 1.08999 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47111 * 240.00121 * 2 1 3 28 28 H 1.09000 * 109.47321 * 120.00201 * 2 1 3 29 29 H 1.09008 * 109.46833 * 60.00278 * 3 2 1 30 30 H 1.09000 * 109.47112 * 300.00329 * 3 2 1 31 31 H 0.96993 * 119.99940 * 180.02562 * 8 7 5 32 32 H 1.08006 * 121.09375 * 0.02562 * 16 15 13 33 33 H 1.09000 * 109.47125 * 90.00398 * 18 17 16 34 34 H 1.09008 * 109.46886 * 210.00287 * 18 17 16 35 35 H 1.08998 * 109.47624 * 330.00327 * 18 17 16 36 36 H 1.09005 * 109.47269 * 28.82803 * 22 21 20 37 37 H 1.08996 * 109.47281 * 148.83144 * 22 21 20 38 38 H 1.08996 * 109.47615 * 180.02562 * 23 22 21 39 39 H 1.09005 * 109.46505 * 299.99864 * 23 22 21 40 40 H 1.08996 * 109.47206 * 59.99691 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1885 1.3001 -1.1769 6 1 5.2590 1.4413 -1.2001 7 6 3.5047 0.9731 -2.3435 8 7 2.1997 0.8281 -2.3209 9 14 4.4428 0.7403 -3.9419 10 1 5.8920 0.9583 -3.7017 11 1 4.2264 -0.6394 -4.4464 12 1 3.9559 1.7175 -4.9484 13 6 4.1794 1.5829 1.1578 14 8 5.3926 1.6594 1.1495 15 6 3.4430 1.6438 2.4399 16 6 2.5047 2.6550 2.6901 17 6 1.8553 2.6456 3.9129 18 6 0.8376 3.7097 4.2341 19 7 2.1285 1.7053 4.7972 20 7 2.9824 0.7747 4.5733 21 6 3.6593 0.6951 3.4441 22 6 4.6553 -0.4162 3.2346 23 6 6.0379 0.0434 3.7018 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9564 0.8901 30 1 1.6767 1.9564 -0.8900 31 1 1.7229 0.5998 -3.1341 32 1 2.2947 3.4159 1.9529 33 1 -0.1495 3.3770 3.9131 34 1 0.8283 3.8909 5.3089 35 1 1.0980 4.6307 3.7126 36 1 4.3500 -1.2909 3.8089 37 1 4.6962 -0.6727 2.1760 38 1 6.7585 -0.7602 3.5499 39 1 6.3432 0.9181 3.1275 40 1 5.9970 0.2999 4.7604 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228442579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:28 Heat of formation + Delta-G solvation = 25.924325 kcal Electronic energy + Delta-G solvation = -22665.136001 eV Core-core repulsion = 19480.934573 eV Total energy + Delta-G solvation = -3184.201427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89329 -38.57763 -35.75515 -34.61004 -33.30123 -32.19128 -31.73599 -30.93354 -27.72623 -26.13014 -25.33617 -24.35889 -23.32932 -21.58050 -20.75069 -19.55026 -17.24724 -17.19026 -16.49692 -15.63247 -15.14630 -14.83067 -14.18151 -13.91024 -13.83318 -13.74559 -13.46486 -13.31894 -12.92847 -12.77319 -12.35376 -12.24491 -12.01013 -11.85412 -11.46358 -11.42763 -11.16741 -10.84982 -10.69474 -10.52987 -10.50532 -10.34253 -10.28789 -10.00819 -9.52935 -9.50852 -9.11291 -8.94792 -8.54705 -7.90488 -6.40844 -4.02578 1.01949 1.22072 3.00545 3.14178 3.20278 3.52592 3.83308 3.97850 4.25465 4.49826 4.74980 4.85526 4.95366 5.07775 5.28950 5.39941 5.55042 5.58774 5.65195 5.75245 5.87236 5.91241 5.97590 6.05692 6.12022 6.18496 6.19843 6.31927 6.35845 6.51873 6.62812 6.64793 6.75887 6.80768 6.88239 7.21172 7.42996 7.62192 7.85655 8.30299 8.94234 9.06867 9.17923 9.71512 10.43270 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.006891 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.066058 B = 4062.149051 C = 4817.206206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.114 3.886 4 N -0.420 5.420 5 C -0.292 4.292 6 H 0.109 0.891 7 C 0.025 3.975 8 N -0.865 5.865 9 Si 0.935 3.065 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.468 3.532 14 O -0.577 6.577 15 C -0.071 4.071 16 C -0.104 4.104 17 C 0.056 3.944 18 C -0.095 4.095 19 N -0.252 5.252 20 N -0.245 5.245 21 C 0.097 3.903 22 C -0.064 4.064 23 C -0.143 4.143 24 H 0.032 0.968 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.102 0.898 28 H 0.019 0.981 29 H 0.032 0.968 30 H 0.122 0.878 31 H 0.268 0.732 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 1.674 5.067 6.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C -0.009 4.009 4 N -0.135 5.135 5 C -0.420 4.420 6 H 0.127 0.873 7 C -0.178 4.178 8 N -0.506 5.506 9 Si 0.761 3.239 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.255 3.745 14 O -0.462 6.462 15 C -0.086 4.086 16 C -0.134 4.134 17 C -0.088 4.088 18 C -0.154 4.154 19 N -0.095 5.095 20 N -0.086 5.086 21 C -0.048 4.048 22 C -0.103 4.103 23 C -0.201 4.201 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.120 0.880 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.140 0.860 31 H 0.079 0.921 32 H 0.166 0.834 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.811 1.033 6.368 7.493 hybrid contribution 0.323 0.449 -2.211 2.280 sum -3.488 1.482 4.157 5.625 Atomic orbital electron populations 1.21562 0.97285 0.99917 1.00467 1.21955 0.94106 0.97999 1.01407 1.22117 0.79684 0.97824 1.01292 1.43796 1.06084 1.58670 1.04997 1.19946 0.94415 1.43748 0.83853 0.87311 1.25384 0.95947 0.96454 0.99997 1.70116 1.06364 1.45825 1.28301 0.85702 0.79752 0.78029 0.80394 1.19136 1.20505 1.20579 1.17442 0.87132 0.87551 0.82356 1.90622 1.12681 1.57090 1.85857 1.21439 0.95159 0.94595 0.97433 1.22424 0.94781 0.98751 0.97412 1.22678 0.97638 0.96975 0.91526 1.20615 0.96396 0.94997 1.03347 1.72711 1.09854 0.99540 1.27363 1.72824 1.02804 1.15061 1.17911 1.22891 0.95839 0.95947 0.90151 1.20363 0.92747 0.94081 1.03105 1.21719 0.94750 1.02906 1.00743 0.94866 0.92362 0.94259 0.87977 0.96276 0.95019 0.86010 0.92060 0.83361 0.90097 0.90256 0.90500 0.90348 0.89537 0.92249 0.90433 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.12 -2.41 5.48 -26.73 -0.15 -2.55 16 3 C 0.11 2.42 4.56 -4.04 -0.02 2.41 16 4 N -0.42 -10.04 2.63 -115.84 -0.30 -10.34 16 5 C -0.29 -7.42 9.51 -15.02 -0.14 -7.56 16 6 H 0.11 2.92 7.18 -52.48 -0.38 2.55 16 7 C 0.02 0.58 5.26 -17.44 -0.09 0.49 16 8 N -0.87 -19.92 7.17 55.50 0.40 -19.52 16 9 Si 0.93 19.11 29.55 -169.99 -5.02 14.09 16 10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 C 0.47 11.00 5.95 -12.27 -0.07 10.93 16 14 O -0.58 -15.00 14.58 5.31 0.08 -14.92 16 15 C -0.07 -1.46 4.95 -104.57 -0.52 -1.98 16 16 C -0.10 -1.83 7.47 -38.76 -0.29 -2.12 16 17 C 0.06 0.90 6.86 -82.47 -0.57 0.34 16 18 C -0.10 -1.07 10.19 36.00 0.37 -0.71 16 19 N -0.25 -4.63 11.41 33.57 0.38 -4.25 16 20 N -0.24 -4.79 11.42 33.82 0.39 -4.40 16 21 C 0.10 1.91 6.16 -81.97 -0.51 1.41 16 22 C -0.06 -1.15 5.64 -27.89 -0.16 -1.31 16 23 C -0.14 -2.41 9.81 37.16 0.36 -2.05 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 2.36 5.86 -51.93 -0.30 2.06 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.62 4.36 -51.92 -0.23 0.39 16 30 H 0.12 2.77 5.89 -51.93 -0.31 2.46 16 31 H 0.27 5.89 8.31 -40.82 -0.34 5.55 16 32 H 0.15 2.34 7.50 -52.48 -0.39 1.95 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 35 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 1.71 7.14 -51.93 -0.37 1.34 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.51 6.48 -51.93 -0.34 1.17 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 323.93 15.07 4.88 4.88 Total: -1.00 -27.55 323.93 -6.28 -33.83 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.67 Total: 5.31 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.41 Total: -4.68 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.86 Total: -38.52 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.08 Total: -14.92 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.55 -6.28 -33.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228442579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.758 kcal (2) G-P(sol) polarization free energy of solvation -27.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds