Wall clock time and date at job start Mon Mar 30 2020 03:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47409 * 2 1 4 4 N 1.46498 * 109.47000 * 179.97438 * 3 2 1 5 5 C 1.34781 * 119.99565 * 180.02562 * 4 3 2 6 6 O 1.21587 * 120.00133 * 0.02562 * 5 4 3 7 7 C 1.47550 * 119.99924 * 180.02562 * 5 4 3 8 8 C 1.40347 * 120.47381 * 179.97438 * 7 5 4 9 9 C 1.36861 * 118.48664 * 179.74577 * 8 7 5 10 10 C 1.39392 * 119.37933 * 0.51947 * 9 8 7 11 11 N 1.38467 * 119.53709 * 179.74941 * 10 9 8 12 12 C 1.46494 * 119.99974 * 184.72839 * 11 10 9 13 13 C 1.46500 * 120.00006 * 4.72263 * 11 10 9 14 14 C 1.50706 * 109.46949 * 270.00486 * 13 11 10 15 15 H 1.07995 * 120.00167 * 359.72205 * 14 13 11 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 11 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47405 * 60.00219 * 18 16 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 22 22 N 1.32601 * 120.92671 * 359.47066 * 10 9 8 23 23 C 1.31679 * 121.63098 * 0.27143 * 22 10 9 24 24 H 1.08996 * 109.47320 * 59.99485 * 1 2 3 25 25 H 1.09000 * 109.47496 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46789 * 299.99730 * 1 2 3 27 27 H 1.09003 * 109.47532 * 240.00280 * 2 1 3 28 28 H 1.08998 * 109.47567 * 120.00029 * 2 1 3 29 29 H 1.09002 * 109.46925 * 60.00353 * 3 2 1 30 30 H 1.08996 * 109.47299 * 300.00528 * 3 2 1 31 31 H 0.97000 * 120.00469 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.75722 * 0.02562 * 8 7 5 33 33 H 1.08000 * 120.30572 * 180.25811 * 9 8 7 34 34 H 1.09001 * 109.47412 * 269.99340 * 12 11 10 35 35 H 1.09000 * 109.47567 * 29.99622 * 12 11 10 36 36 H 1.09002 * 109.47279 * 149.99070 * 12 11 10 37 37 H 1.09000 * 109.47175 * 150.00512 * 13 11 10 38 38 H 1.09001 * 109.47297 * 30.00019 * 13 11 10 39 39 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 40 40 H 1.08004 * 119.73564 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1789 2.6097 0.0012 6 8 3.5710 3.6626 0.0018 7 6 5.6544 2.6096 0.0013 8 6 6.3662 3.8192 0.0014 9 6 7.7340 3.7718 0.0068 10 6 8.3753 2.5342 0.0010 11 7 9.7590 2.4824 0.0011 12 6 10.4437 1.1920 -0.1096 13 6 10.5383 3.7180 0.1118 14 6 10.8101 4.2655 -1.2657 15 1 10.4434 3.7428 -2.1367 16 6 11.5316 5.4311 -1.4141 17 7 11.9829 6.0647 -0.3537 18 14 11.8680 6.1101 -3.1215 19 1 10.5801 6.3961 -3.8031 20 1 12.6580 7.3626 -3.0093 21 1 12.6339 5.1113 -3.9095 22 7 7.6789 1.4057 0.0008 23 6 6.3621 1.4069 0.0008 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.9900 0.6024 0.0006 32 1 5.8464 4.7659 0.0019 33 1 8.3109 4.6847 0.0112 34 1 10.6102 0.7823 0.8867 35 1 9.8285 0.5026 -0.6877 36 1 11.4020 1.3309 -0.6101 37 1 11.4835 3.5078 0.6123 38 1 9.9762 4.4515 0.6899 39 1 12.4907 6.8845 -0.4583 40 1 5.8256 0.4695 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269262971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:55 Heat of formation + Delta-G solvation = -23.432181 kcal Electronic energy + Delta-G solvation = -20722.873851 eV Core-core repulsion = 17536.532165 eV Total energy + Delta-G solvation = -3186.341686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57131 -40.21382 -37.56378 -36.74323 -34.81918 -33.67544 -33.42679 -31.42653 -29.84449 -27.77839 -26.56468 -25.38345 -23.98770 -22.85118 -22.49661 -21.31030 -18.96980 -18.69969 -17.99238 -17.71506 -16.72671 -16.70653 -16.41336 -15.92933 -15.82649 -15.32234 -15.22378 -14.86266 -14.32724 -14.07464 -13.86856 -13.75716 -13.51912 -13.35971 -13.24632 -13.10644 -12.88230 -12.72426 -12.53927 -12.12705 -11.98852 -11.85948 -11.70201 -11.17152 -10.95717 -10.73951 -10.65084 -10.34429 -10.09284 -8.56133 -8.13633 -6.40446 -0.03174 0.44926 1.39278 1.40751 1.48514 1.95430 2.14585 2.22882 2.39527 3.03668 3.05375 3.51816 3.89845 3.93791 3.99823 4.07661 4.13390 4.29085 4.41119 4.52306 4.69551 4.71615 4.79726 4.79977 4.86824 4.91845 4.96416 5.09432 5.11525 5.19724 5.29681 5.32661 5.37396 5.52419 5.58832 5.62955 5.97217 6.04723 6.56930 6.58725 6.69217 7.11017 7.26151 7.32403 8.80310 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028047 B = 0.003406 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.073829 B = 8219.480180 C = 8736.358600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.117 3.883 4 N -0.716 5.716 5 C 0.577 3.423 6 O -0.591 6.591 7 C -0.285 4.285 8 C 0.017 3.983 9 C -0.252 4.252 10 C 0.421 3.579 11 N -0.590 5.590 12 C 0.102 3.898 13 C 0.262 3.738 14 C -0.546 4.546 15 H 0.052 0.948 16 C 0.019 3.981 17 N -0.922 5.922 18 Si 0.960 3.040 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.268 1.268 22 N -0.563 5.563 23 C 0.200 3.800 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.414 0.586 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.021 0.979 39 H 0.269 0.731 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.334 -14.420 1.010 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.007 4.007 4 N -0.368 5.368 5 C 0.366 3.634 6 O -0.473 6.473 7 C -0.294 4.294 8 C -0.009 4.009 9 C -0.278 4.278 10 C 0.184 3.816 11 N -0.296 5.296 12 C -0.041 4.041 13 C 0.141 3.859 14 C -0.585 4.585 15 H 0.070 0.930 16 C -0.182 4.182 17 N -0.561 5.561 18 Si 0.785 3.215 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.193 1.193 22 N -0.282 5.282 23 C 0.038 3.962 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.252 0.748 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -15.911 -14.324 1.080 21.436 hybrid contribution 0.381 1.452 -0.710 1.661 sum -15.530 -12.871 0.370 20.174 Atomic orbital electron populations 1.21692 0.94143 1.02819 1.02165 1.21707 0.97226 0.93685 1.03900 1.21500 0.78546 0.99090 1.01525 1.45766 1.07839 1.08085 1.75134 1.17998 0.86705 0.83811 0.74924 1.90721 1.70712 1.32991 1.52905 1.20411 0.93477 0.95453 1.20096 1.21101 0.92420 0.98657 0.88725 1.21234 0.95320 0.98212 1.13004 1.18743 0.85705 0.89637 0.87497 1.47022 1.01511 1.09123 1.71952 1.21594 0.97201 0.83772 1.01498 1.19058 0.90092 0.80558 0.96189 1.21639 1.34971 1.08725 0.93118 0.92982 1.25704 0.95043 0.96702 1.00717 1.70004 1.36994 1.18377 1.30693 0.85580 0.78327 0.77850 0.79788 1.19978 1.20488 1.19333 1.67339 1.09170 1.27949 1.23711 1.23095 0.88175 0.97432 0.87462 0.92623 0.90984 0.92568 0.90152 0.90068 0.92488 0.92587 0.74808 0.84741 0.85823 0.92434 0.90352 0.91713 0.95594 0.96058 0.92205 0.78604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.13 -1.25 6.05 30.59 0.19 -1.07 16 3 C 0.12 2.00 5.67 86.38 0.49 2.49 16 4 N -0.72 -13.95 5.51 -466.25 -2.57 -16.52 16 5 C 0.58 16.94 7.77 86.70 0.67 17.61 16 6 O -0.59 -22.12 16.41 -3.99 -0.07 -22.19 16 7 C -0.29 -8.83 5.89 -19.99 -0.12 -8.95 16 8 C 0.02 0.61 9.65 22.46 0.22 0.83 16 9 C -0.25 -10.36 9.12 22.22 0.20 -10.16 16 10 C 0.42 16.96 7.36 133.25 0.98 17.94 16 11 N -0.59 -24.92 2.96 -733.32 -2.17 -27.09 16 12 C 0.10 3.50 10.41 127.77 1.33 4.83 16 13 C 0.26 12.97 4.78 85.63 0.41 13.38 16 14 C -0.55 -29.19 9.33 25.60 0.24 -28.95 16 15 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 16 C 0.02 1.00 5.46 84.66 0.46 1.47 16 17 N -0.92 -52.05 13.29 21.45 0.28 -51.77 16 18 Si 0.96 42.81 29.54 68.60 2.03 44.83 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 N -0.56 -19.08 9.13 -192.32 -1.76 -20.83 16 23 C 0.20 5.40 10.71 85.03 0.91 6.31 16 24 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.41 5.24 6.52 -92.71 -0.60 4.64 16 32 H 0.13 4.82 7.73 -2.91 -0.02 4.80 16 33 H 0.12 5.67 6.17 -2.91 -0.02 5.65 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 2.48 7.44 -2.39 -0.02 2.46 16 36 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 37 H 0.03 1.34 8.07 -2.39 -0.02 1.32 16 38 H 0.02 1.13 6.35 -2.39 -0.02 1.12 16 39 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.20 3.12 6.41 -2.91 -0.02 3.10 16 Total: -1.00 -66.75 338.27 2.89 -63.87 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.44 Total: 14.63 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 6.70 Total: 15.07 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.21 Total: -116.21 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.07 Total: -22.19 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -66.75 2.89 -63.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269262971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.437 kcal (2) G-P(sol) polarization free energy of solvation -66.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds