Wall clock time and date at job start Mon Mar 30 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47040 * 179.97438 * 3 2 1 5 5 N 1.39932 * 125.75304 * 269.69352 * 4 3 2 6 6 C 1.30447 * 108.91617 * 179.81516 * 5 4 3 7 7 C 1.41318 * 108.02289 * 0.44056 * 6 5 4 8 8 C 1.47359 * 126.42047 * 179.70339 * 7 6 5 9 9 O 1.21636 * 119.99606 * 245.85647 * 8 7 6 10 10 N 1.34773 * 120.00208 * 65.85148 * 8 7 6 11 11 C 1.46501 * 120.00116 * 5.56832 * 10 8 7 12 12 C 1.36985 * 120.00241 * 185.56917 * 10 8 7 13 13 H 1.08003 * 119.99746 * 6.63027 * 12 10 8 14 14 C 1.38975 * 120.00088 * 186.63666 * 12 10 8 15 15 N 1.31411 * 120.00063 * 6.68861 * 14 12 10 16 16 Si 1.86799 * 119.99850 * 186.68431 * 14 12 10 17 17 H 1.48502 * 109.47127 * 60.00121 * 16 14 12 18 18 H 1.48499 * 109.47011 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47392 * 300.00348 * 16 14 12 20 20 C 1.34286 * 125.75063 * 90.00686 * 4 3 2 21 21 C 1.50707 * 126.29882 * 359.96852 * 20 4 3 22 22 C 1.53000 * 117.49874 * 196.45052 * 21 20 4 23 23 C 1.52997 * 117.49743 * 127.78712 * 21 20 4 24 24 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47308 * 59.99860 * 1 2 3 26 26 H 1.08998 * 109.47546 * 299.99951 * 1 2 3 27 27 H 1.09002 * 109.47308 * 120.00139 * 2 1 3 28 28 H 1.08998 * 109.47546 * 240.00049 * 2 1 3 29 29 H 1.09001 * 109.47029 * 299.99706 * 3 2 1 30 30 H 1.09005 * 109.47235 * 60.00186 * 3 2 1 31 31 H 1.08000 * 125.98511 * 180.14015 * 6 5 4 32 32 H 1.09005 * 109.46697 * 354.64244 * 11 10 8 33 33 H 1.08994 * 109.47539 * 114.64078 * 11 10 8 34 34 H 1.08998 * 109.46954 * 234.64868 * 11 10 8 35 35 H 0.96996 * 119.99754 * 180.02562 * 15 14 12 36 36 H 1.09001 * 115.54920 * 342.12464 * 21 20 4 37 37 H 1.08994 * 117.49721 * 359.97438 * 22 21 20 38 38 H 1.08999 * 117.49777 * 145.02449 * 22 21 20 39 39 H 1.08998 * 117.50258 * 214.98124 * 23 21 20 40 40 H 1.09008 * 117.49796 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 7 4.3221 1.4487 1.1366 6 6 5.5708 1.4426 0.7593 7 6 5.6007 1.4425 -0.6536 8 6 6.8047 1.4427 -1.5032 9 8 7.0528 2.4040 -2.2060 10 7 7.6309 0.3780 -1.5015 11 6 7.2709 -0.8274 -0.7507 12 6 8.8074 0.4228 -2.2017 13 1 9.1245 1.3448 -2.6662 14 6 9.5928 -0.7182 -2.3145 15 7 9.1474 -1.8697 -1.8644 16 14 11.2816 -0.6150 -3.1061 17 1 12.1311 0.3309 -2.3386 18 1 11.9123 -1.9594 -3.1040 19 1 11.1445 -0.1342 -4.5044 20 6 4.2900 1.4424 -1.0889 21 6 3.8261 1.4417 -2.5228 22 6 4.8472 1.0575 -3.5954 23 6 4.3994 2.5142 -3.4512 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 6.4310 1.4430 1.4123 32 1 6.3568 -0.6441 -0.1859 33 1 7.1101 -1.6529 -1.4440 34 1 8.0777 -1.0819 -0.0635 35 1 9.6958 -2.6659 -1.9428 36 1 2.7910 1.1394 -2.6819 37 1 5.8546 0.8056 -3.2640 38 1 4.4839 0.5026 -4.4604 39 1 3.7417 2.9171 -4.2214 40 1 5.1118 3.2206 -3.0248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270870447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:51 Heat of formation + Delta-G solvation = 80.038666 kcal Electronic energy + Delta-G solvation = -22295.535096 eV Core-core repulsion = 19113.680243 eV Total energy + Delta-G solvation = -3181.854854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05427 -38.09571 -36.49537 -35.33511 -34.47676 -31.67320 -31.17996 -29.42622 -26.73619 -25.95269 -24.46237 -23.14106 -22.11646 -21.86687 -21.05111 -19.80027 -18.27105 -17.06148 -16.69817 -15.85825 -15.20370 -14.87176 -14.61491 -14.32941 -14.12349 -13.88773 -13.65558 -13.24817 -13.07755 -12.60832 -12.27828 -12.08917 -11.85814 -11.55727 -11.50016 -11.06185 -11.00687 -10.93998 -10.81100 -10.69700 -10.56684 -10.42161 -10.36570 -10.13164 -9.91763 -8.99814 -8.78751 -8.41273 -7.79250 -7.72899 -6.18583 -3.75021 2.10541 2.70791 3.02849 3.23416 3.26987 3.31705 3.99264 4.17866 4.34097 4.55745 4.69546 4.78520 4.96672 5.04271 5.15526 5.20889 5.23675 5.29319 5.30459 5.45168 5.48830 5.52255 5.77086 5.85211 5.97948 6.03409 6.09689 6.15692 6.21206 6.45307 6.59308 6.71617 6.85353 6.99585 7.17407 7.32428 7.50319 7.62155 8.08093 8.14723 8.56689 9.25188 9.52282 10.09426 10.75324 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.005171 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.677744 B = 5413.506965 C = 5704.542785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.135 3.865 4 N -0.367 5.367 5 N -0.308 5.308 6 C 0.076 3.924 7 C -0.240 4.240 8 C 0.513 3.487 9 O -0.592 6.592 10 N -0.438 5.438 11 C 0.117 3.883 12 C -0.299 4.299 13 H 0.104 0.896 14 C 0.027 3.973 15 N -0.886 5.886 16 Si 0.930 3.070 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.147 3.853 21 C -0.117 4.117 22 C -0.157 4.157 23 C -0.154 4.154 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.183 0.817 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.265 0.735 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.155 1.459 1.969 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C 0.013 3.987 4 N -0.148 5.148 5 N -0.128 5.128 6 C -0.110 4.110 7 C -0.255 4.255 8 C 0.300 3.700 9 O -0.478 6.478 10 N -0.155 5.155 11 C -0.027 4.027 12 C -0.426 4.426 13 H 0.122 0.878 14 C -0.175 4.175 15 N -0.527 5.527 16 Si 0.757 3.243 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.199 1.199 20 C 0.018 3.982 21 C -0.137 4.137 22 C -0.195 4.195 23 C -0.191 4.191 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.200 0.800 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.861 1.696 2.672 15.195 hybrid contribution 1.312 -0.330 -0.807 1.575 sum -13.549 1.365 1.865 13.745 Atomic orbital electron populations 1.21689 0.94549 1.02320 1.02014 1.21951 0.96341 0.96137 1.03669 1.21684 0.74820 0.98165 1.04028 1.48141 1.05842 1.57671 1.03174 1.77012 1.01955 1.26393 1.07457 1.23887 0.94762 0.98250 0.94129 1.20251 0.93449 1.17985 0.93820 1.16827 0.83060 0.84619 0.85452 1.90581 1.75487 1.35956 1.45781 1.43616 1.17570 1.12105 1.42230 1.21721 0.96875 0.87887 0.96193 1.19747 0.95538 0.97801 1.29562 0.87824 1.25305 1.00049 0.94640 0.97490 1.70147 1.36982 0.99147 1.46390 0.85938 0.81574 0.77172 0.79646 1.19957 1.21017 1.19857 1.20385 0.89808 0.99461 0.88574 1.20381 0.98563 1.08933 0.85849 1.23282 1.00510 0.97890 0.97808 1.23172 1.02744 0.93324 0.99891 0.92073 0.92443 0.92389 0.90874 0.91185 0.89267 0.88984 0.79986 0.95589 0.90698 0.92473 0.92404 0.87406 0.85881 0.88946 0.89181 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.15 0.37 -0.73 16 2 C -0.14 -1.47 6.26 -26.73 -0.17 -1.63 16 3 C 0.13 1.56 6.12 -4.04 -0.02 1.53 16 4 N -0.37 -6.03 3.58 -56.58 -0.20 -6.23 16 5 N -0.31 -5.60 12.50 30.87 0.39 -5.22 16 6 C 0.08 1.47 10.86 -16.97 -0.18 1.28 16 7 C -0.24 -5.10 4.31 -105.06 -0.45 -5.55 16 8 C 0.51 12.67 4.50 -12.55 -0.06 12.61 16 9 O -0.59 -16.04 13.84 5.25 0.07 -15.97 16 10 N -0.44 -11.31 2.97 -123.44 -0.37 -11.67 16 11 C 0.12 2.78 8.73 59.85 0.52 3.30 16 12 C -0.30 -8.23 9.54 -14.98 -0.14 -8.37 16 13 H 0.10 2.97 7.21 -52.48 -0.38 2.59 16 14 C 0.03 0.71 5.40 -17.46 -0.09 0.62 16 15 N -0.89 -23.31 9.60 55.50 0.53 -22.78 16 16 Si 0.93 20.73 29.56 -169.99 -5.02 15.70 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.15 2.70 6.67 -81.56 -0.54 2.16 16 21 C -0.12 -1.90 5.79 -91.77 -0.53 -2.43 16 22 C -0.16 -2.86 9.58 -26.69 -0.26 -3.11 16 23 C -0.15 -2.57 9.71 -26.69 -0.26 -2.83 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 0.88 7.49 -51.93 -0.39 0.49 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.18 3.15 8.06 -52.49 -0.42 2.73 16 32 H 0.03 0.56 5.40 -51.93 -0.28 0.28 16 33 H 0.07 1.89 6.80 -51.93 -0.35 1.53 16 34 H 0.06 1.40 7.35 -51.93 -0.38 1.02 16 35 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 36 H 0.11 1.39 7.64 -51.93 -0.40 1.00 16 37 H 0.12 2.81 4.76 -51.93 -0.25 2.56 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.12 2.36 6.49 -51.92 -0.34 2.02 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -30.80 325.39 -7.22 -38.02 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.70 Total: 6.41 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.82 Total: -3.16 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.35 Total: -45.90 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.07 Total: -15.97 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.80 -7.22 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270870447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.060 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds