Wall clock time and date at job start Mon Mar 30 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47040 * 179.97438 * 3 2 1 5 5 N 1.39932 * 125.75304 * 269.69352 * 4 3 2 6 6 C 1.30447 * 108.91617 * 179.81516 * 5 4 3 7 7 C 1.41318 * 108.02289 * 0.44056 * 6 5 4 8 8 C 1.47359 * 126.42047 * 179.70339 * 7 6 5 9 9 O 1.21636 * 119.99606 * 245.85647 * 8 7 6 10 10 N 1.34773 * 120.00208 * 65.85148 * 8 7 6 11 11 C 1.46501 * 120.00116 * 5.56832 * 10 8 7 12 12 C 1.36985 * 120.00241 * 185.56917 * 10 8 7 13 13 H 1.08003 * 119.99746 * 6.63027 * 12 10 8 14 14 C 1.38975 * 120.00088 * 186.63666 * 12 10 8 15 15 N 1.31411 * 120.00063 * 6.68861 * 14 12 10 16 16 Si 1.86799 * 119.99850 * 186.68431 * 14 12 10 17 17 H 1.48502 * 109.47127 * 60.00121 * 16 14 12 18 18 H 1.48499 * 109.47011 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47392 * 300.00348 * 16 14 12 20 20 C 1.34286 * 125.75063 * 90.00686 * 4 3 2 21 21 C 1.50707 * 126.29882 * 359.96852 * 20 4 3 22 22 C 1.53000 * 117.49874 * 196.45052 * 21 20 4 23 23 C 1.52997 * 117.49743 * 127.78712 * 21 20 4 24 24 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47308 * 59.99860 * 1 2 3 26 26 H 1.08998 * 109.47546 * 299.99951 * 1 2 3 27 27 H 1.09002 * 109.47308 * 120.00139 * 2 1 3 28 28 H 1.08998 * 109.47546 * 240.00049 * 2 1 3 29 29 H 1.09001 * 109.47029 * 299.99706 * 3 2 1 30 30 H 1.09005 * 109.47235 * 60.00186 * 3 2 1 31 31 H 1.08000 * 125.98511 * 180.14015 * 6 5 4 32 32 H 1.09005 * 109.46697 * 354.64244 * 11 10 8 33 33 H 1.08994 * 109.47539 * 114.64078 * 11 10 8 34 34 H 1.08998 * 109.46954 * 234.64868 * 11 10 8 35 35 H 0.96996 * 119.99754 * 180.02562 * 15 14 12 36 36 H 1.09001 * 115.54920 * 342.12464 * 21 20 4 37 37 H 1.08994 * 117.49721 * 359.97438 * 22 21 20 38 38 H 1.08999 * 117.49777 * 145.02449 * 22 21 20 39 39 H 1.08998 * 117.50258 * 214.98124 * 23 21 20 40 40 H 1.09008 * 117.49796 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 7 4.3221 1.4487 1.1366 6 6 5.5708 1.4426 0.7593 7 6 5.6007 1.4425 -0.6536 8 6 6.8047 1.4427 -1.5032 9 8 7.0528 2.4040 -2.2060 10 7 7.6309 0.3780 -1.5015 11 6 7.2709 -0.8274 -0.7507 12 6 8.8074 0.4228 -2.2017 13 1 9.1245 1.3448 -2.6662 14 6 9.5928 -0.7182 -2.3145 15 7 9.1474 -1.8697 -1.8644 16 14 11.2816 -0.6150 -3.1061 17 1 12.1311 0.3309 -2.3386 18 1 11.9123 -1.9594 -3.1040 19 1 11.1445 -0.1342 -4.5044 20 6 4.2900 1.4424 -1.0889 21 6 3.8261 1.4417 -2.5228 22 6 4.8472 1.0575 -3.5954 23 6 4.3994 2.5142 -3.4512 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 6.4310 1.4430 1.4123 32 1 6.3568 -0.6441 -0.1859 33 1 7.1101 -1.6529 -1.4440 34 1 8.0777 -1.0819 -0.0635 35 1 9.6958 -2.6659 -1.9428 36 1 2.7910 1.1394 -2.6819 37 1 5.8546 0.8056 -3.2640 38 1 4.4839 0.5026 -4.4604 39 1 3.7417 2.9171 -4.2214 40 1 5.1118 3.2206 -3.0248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270870447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:50 Heat of formation + Delta-G solvation = 61.827112 kcal Electronic energy + Delta-G solvation = -22296.324808 eV Core-core repulsion = 19113.680243 eV Total energy + Delta-G solvation = -3182.644566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.51123 -39.95487 -37.90905 -36.52384 -36.26033 -33.55709 -32.46489 -30.94876 -28.38914 -27.40351 -26.25148 -24.63788 -23.34419 -22.93184 -22.58957 -21.22317 -19.84635 -18.91986 -18.36111 -17.48850 -16.60643 -16.28978 -15.86691 -15.78573 -15.64330 -15.53768 -15.35696 -14.64674 -14.35129 -14.05526 -13.67857 -13.49011 -13.13071 -12.95397 -12.79778 -12.65710 -12.50433 -12.33335 -12.27542 -12.16184 -12.08613 -12.06246 -11.87671 -11.68463 -11.27167 -11.00953 -10.35958 -10.12328 -9.80629 -9.30902 -8.20003 -5.85317 0.66406 1.37186 1.42093 1.46396 1.51484 1.55485 2.14506 2.31657 2.98911 3.16196 3.22951 3.43455 3.59702 3.88698 3.90548 3.98849 4.02426 4.11569 4.25767 4.37447 4.45578 4.55208 4.66249 4.70499 4.76709 4.82759 4.85141 5.02010 5.13741 5.16609 5.18287 5.29722 5.38231 5.39281 5.47360 5.47679 5.53216 6.02331 6.10191 6.54049 6.63056 7.21899 7.54113 8.12173 8.72502 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024868 B = 0.005171 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.677744 B = 5413.506965 C = 5704.542785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.121 3.879 4 N -0.354 5.354 5 N -0.310 5.310 6 C 0.068 3.932 7 C -0.282 4.282 8 C 0.521 3.479 9 O -0.625 6.625 10 N -0.453 5.453 11 C 0.139 3.861 12 C -0.335 4.335 13 H 0.080 0.920 14 C -0.005 4.005 15 N -0.899 5.899 16 Si 0.992 3.008 17 H -0.272 1.272 18 H -0.271 1.271 19 H -0.273 1.273 20 C 0.152 3.848 21 C -0.102 4.102 22 C -0.179 4.179 23 C -0.145 4.145 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.191 0.809 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.270 0.730 36 H 0.155 0.845 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.133 0.867 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.631 1.268 1.673 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.175 4.175 3 C 0.002 3.998 4 N -0.134 5.134 5 N -0.130 5.130 6 C -0.118 4.118 7 C -0.296 4.296 8 C 0.310 3.690 9 O -0.513 6.513 10 N -0.170 5.170 11 C -0.005 4.005 12 C -0.462 4.462 13 H 0.098 0.902 14 C -0.205 4.205 15 N -0.540 5.540 16 Si 0.816 3.184 17 H -0.197 1.197 18 H -0.195 1.195 19 H -0.198 1.198 20 C 0.021 3.979 21 C -0.122 4.122 22 C -0.216 4.216 23 C -0.183 4.183 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.208 0.792 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.172 0.828 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.374 1.489 2.413 17.604 hybrid contribution 1.971 -0.239 -0.700 2.105 sum -15.403 1.251 1.712 15.549 Atomic orbital electron populations 1.21659 0.92004 1.03049 1.03229 1.21893 0.98377 0.94742 1.02456 1.22244 0.71676 0.99645 1.06214 1.48555 1.07447 1.55442 1.01955 1.76969 1.01559 1.26183 1.08321 1.24003 0.95643 0.98650 0.93459 1.20076 0.93340 1.21861 0.94373 1.17281 0.83478 0.83532 0.84692 1.90536 1.76501 1.37060 1.47203 1.43756 1.17627 1.12951 1.42691 1.21448 0.97056 0.86728 0.95237 1.19705 0.97309 0.97686 1.31540 0.90201 1.26046 1.03055 0.93954 0.97492 1.70241 1.37992 0.99443 1.46277 0.85011 0.77209 0.77661 0.78536 1.19729 1.19530 1.19801 1.20675 0.89220 0.97794 0.90212 1.20632 1.00006 1.07758 0.83812 1.23173 0.98820 0.99735 0.99904 1.23126 1.02481 0.91878 1.00799 0.91649 0.90891 0.91534 0.92643 0.91944 0.86466 0.87495 0.79187 0.93690 0.92446 0.93798 0.91951 0.82798 0.90938 0.86149 0.84926 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.14 -2.38 6.26 30.59 0.19 -2.19 16 3 C 0.12 2.37 6.12 86.38 0.53 2.90 16 4 N -0.35 -10.86 3.58 -332.91 -1.19 -12.05 16 5 N -0.31 -10.93 12.50 -56.26 -0.70 -11.64 16 6 C 0.07 2.64 10.86 85.66 0.93 3.57 16 7 C -0.28 -12.13 4.31 -20.15 -0.09 -12.22 16 8 C 0.52 26.92 4.50 86.64 0.39 27.31 16 9 O -0.62 -35.78 13.84 -4.14 -0.06 -35.84 16 10 N -0.45 -24.50 2.97 -662.69 -1.97 -26.46 16 11 C 0.14 6.82 8.73 127.77 1.12 7.94 16 12 C -0.33 -19.33 9.54 84.07 0.80 -18.53 16 13 H 0.08 4.88 7.21 -2.91 -0.02 4.86 16 14 C 0.00 -0.26 5.40 84.93 0.46 0.19 16 15 N -0.90 -48.14 9.60 21.67 0.21 -47.93 16 16 Si 0.99 43.09 29.56 68.60 2.03 45.12 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 C 0.15 5.44 6.67 42.15 0.28 5.72 16 21 C -0.10 -3.07 5.79 -11.54 -0.07 -3.13 16 22 C -0.18 -6.38 9.58 30.62 0.29 -6.09 16 23 C -0.15 -4.64 9.71 30.62 0.30 -4.34 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.12 1.70 7.49 -2.39 -0.02 1.68 16 30 H 0.11 1.83 8.14 -2.38 -0.02 1.82 16 31 H 0.19 6.74 8.06 -2.91 -0.02 6.72 16 32 H 0.04 2.00 5.40 -2.38 -0.01 1.98 16 33 H 0.06 2.99 6.80 -2.39 -0.02 2.97 16 34 H 0.04 2.22 7.35 -2.39 -0.02 2.20 16 35 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 36 H 0.15 3.18 7.64 -2.39 -0.02 3.17 16 37 H 0.07 3.43 4.76 -2.39 -0.01 3.42 16 38 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.08 3.22 6.49 -2.38 -0.02 3.20 16 Total: -1.00 -70.49 325.39 5.20 -65.29 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 1.04 Total: 23.24 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 5.85 Total: 0.28 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -3.66 Total: -98.08 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.06 Total: -35.84 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -70.49 5.20 -65.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270870447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.116 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds