Wall clock time and date at job start Mon Mar 30 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 N 1.46499 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99665 * 180.27868 * 4 3 2 6 6 O 1.21593 * 120.00264 * 359.72086 * 5 4 3 7 7 C 1.47541 * 119.99728 * 179.72391 * 5 4 3 8 8 C 1.40351 * 120.47387 * 179.97438 * 7 5 4 9 9 C 1.36860 * 118.49132 * 180.02562 * 8 7 5 10 10 C 1.39395 * 119.37949 * 359.97438 * 9 8 7 11 11 N 1.38455 * 119.54044 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99831 * 359.97438 * 11 10 9 13 13 C 1.52996 * 109.46955 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47028 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99893 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00225 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99765 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46763 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47207 * 119.99845 * 18 16 14 21 21 H 1.48503 * 109.46774 * 240.00311 * 18 16 14 22 22 N 1.32608 * 120.92090 * 0.02562 * 10 9 8 23 23 C 1.31672 * 121.63729 * 359.70030 * 22 10 9 24 24 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 26 26 H 1.09007 * 109.47288 * 60.00489 * 1 2 3 27 27 H 1.08995 * 109.47672 * 240.00331 * 2 1 3 28 28 H 1.09006 * 109.46819 * 119.99760 * 2 1 3 29 29 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 30 30 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 31 31 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.75443 * 359.97438 * 8 7 5 33 33 H 1.07994 * 120.30807 * 179.97438 * 9 8 7 34 34 H 0.96997 * 120.00182 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47062 * 300.00053 * 12 11 10 36 36 H 1.08997 * 109.46930 * 59.99807 * 12 11 10 37 37 H 1.09002 * 109.47007 * 299.99754 * 13 12 11 38 38 H 1.08997 * 109.47731 * 59.99964 * 13 12 11 39 39 H 0.97006 * 119.99879 * 180.02562 * 17 16 14 40 40 H 1.08005 * 119.74440 * 180.29020 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1787 2.6099 0.0064 6 8 3.5707 3.6629 0.0060 7 6 5.6541 2.6099 0.0132 8 6 6.3658 3.8196 0.0187 9 6 7.7336 3.7722 0.0244 10 6 8.3751 2.5347 0.0250 11 7 9.7586 2.4829 0.0302 12 6 10.5380 3.7234 0.0344 13 6 12.0307 3.3879 0.0390 14 6 12.8324 4.6639 0.0427 15 1 12.3277 5.6188 0.0414 16 6 14.2103 4.6125 0.0477 17 7 14.8248 3.4498 0.0489 18 14 15.2040 6.1942 0.0530 19 1 14.2818 7.3581 0.0514 20 1 16.0556 6.2397 1.2687 21 1 16.0645 6.2421 -1.1564 22 7 7.6787 1.4062 0.0197 23 6 6.3619 1.4072 0.0196 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5137 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9899 0.6025 0.0013 32 1 5.8460 4.7662 0.0177 33 1 8.3105 4.6852 0.0283 34 1 10.2119 1.6254 0.0303 35 1 10.2996 4.3053 -0.8560 36 1 10.2928 4.3035 0.9240 37 1 12.2695 2.8058 0.9292 38 1 12.2756 2.8079 -0.8508 39 1 15.7942 3.4136 0.0528 40 1 5.8254 0.4698 0.0199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273358433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:59 Heat of formation + Delta-G solvation = -20.539012 kcal Electronic energy + Delta-G solvation = -19946.898894 eV Core-core repulsion = 16760.682665 eV Total energy + Delta-G solvation = -3186.216229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52925 -39.15217 -36.12249 -35.91954 -33.31503 -32.88296 -32.39333 -30.71649 -28.87380 -26.43792 -25.04849 -23.52452 -22.93987 -21.96708 -21.10729 -20.39227 -18.06323 -17.26505 -16.90108 -16.20442 -16.04568 -15.69095 -14.89982 -14.87138 -14.55942 -14.43186 -14.09332 -13.81464 -13.36597 -13.27719 -12.91757 -12.71052 -12.60277 -12.38972 -12.30669 -11.53070 -11.30735 -11.30065 -11.22575 -10.73213 -10.69726 -10.15393 -9.93782 -9.75889 -9.64147 -9.39112 -9.31682 -9.26665 -8.52666 -7.50885 -6.17575 -4.21802 0.99493 1.46567 2.97878 3.03123 3.22824 3.30217 3.33374 3.44633 4.06859 4.33976 4.41943 4.57568 4.58454 4.76192 4.88390 4.96271 5.15105 5.19703 5.22777 5.24164 5.31242 5.41477 5.60818 5.72395 5.76365 5.80662 5.92522 6.06923 6.09523 6.23038 6.29688 6.50516 6.57864 7.11877 7.35869 7.43228 7.48666 7.79016 7.81187 8.12633 8.16514 8.28480 8.83916 9.43761 10.93894 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.058076 B = 0.002389 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.012329 B =11715.857670 C =12161.510623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.120 3.880 4 N -0.735 5.735 5 C 0.576 3.424 6 O -0.549 6.549 7 C -0.280 4.280 8 C 0.027 3.973 9 C -0.248 4.248 10 C 0.432 3.568 11 N -0.699 5.699 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 N -0.558 5.558 23 C 0.193 3.807 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.398 0.602 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.406 0.594 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.263 0.737 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.207 -7.120 -0.070 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.388 5.388 5 C 0.365 3.635 6 O -0.428 6.428 7 C -0.289 4.289 8 C 0.001 3.999 9 C -0.273 4.273 10 C 0.192 3.808 11 N -0.324 5.324 12 C -0.002 4.002 13 C -0.025 4.025 14 C -0.564 4.564 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 N -0.276 5.276 23 C 0.031 3.969 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.234 0.766 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.242 0.758 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.828 -6.995 -0.074 23.876 hybrid contribution 0.662 0.748 0.005 0.999 sum -22.166 -6.247 -0.069 23.029 Atomic orbital electron populations 1.21676 0.94574 1.02137 1.02347 1.21752 0.96990 0.95929 1.02847 1.21375 0.79542 0.97024 1.02457 1.45900 1.07232 1.08674 1.76955 1.18025 0.86958 0.83357 0.75196 1.90749 1.70117 1.31238 1.50680 1.20333 0.93140 0.95547 1.19919 1.21059 0.92893 0.97824 0.88121 1.21211 0.95033 0.98036 1.13064 1.18754 0.86177 0.89205 0.86617 1.45249 1.01263 1.11330 1.74552 1.21961 0.94062 0.83757 1.00393 1.19315 0.86770 0.98179 0.98253 1.21027 0.91187 0.92223 1.51922 0.92139 1.25009 0.97978 0.96446 0.94849 1.69966 1.09090 1.23972 1.49913 0.86440 0.80073 0.83246 0.77701 1.19574 1.20885 1.20879 1.67271 1.08351 1.29060 1.22913 1.22459 0.88908 0.96312 0.89238 0.92195 0.92341 0.92346 0.91212 0.91216 0.91522 0.91508 0.76648 0.84237 0.84184 0.75798 0.92317 0.92306 0.95692 0.95694 0.92765 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.16 0.37 -0.33 16 2 C -0.14 -0.72 6.05 -26.73 -0.16 -0.88 16 3 C 0.12 0.96 5.67 -4.04 -0.02 0.93 16 4 N -0.73 -6.74 5.51 -61.34 -0.34 -7.07 16 5 C 0.58 7.47 7.77 -12.47 -0.10 7.38 16 6 O -0.55 -8.99 16.41 5.28 0.09 -8.90 16 7 C -0.28 -3.69 5.89 -104.82 -0.62 -4.30 16 8 C 0.03 0.37 9.65 -39.29 -0.38 -0.01 16 9 C -0.25 -3.68 9.25 -39.65 -0.37 -4.05 16 10 C 0.43 6.95 7.64 -155.28 -1.19 5.76 16 11 N -0.70 -11.90 5.71 -60.45 -0.34 -12.24 16 12 C 0.12 2.28 4.81 -4.04 -0.02 2.26 16 13 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 14 C -0.52 -13.88 9.11 -34.44 -0.31 -14.19 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -25.54 13.29 55.43 0.74 -24.81 16 18 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 N -0.56 -8.43 10.38 -12.14 -0.13 -8.55 16 23 C 0.19 2.38 10.71 -17.13 -0.18 2.19 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.40 2.61 6.52 -40.82 -0.27 2.34 16 32 H 0.14 1.83 7.73 -52.49 -0.41 1.42 16 33 H 0.14 1.98 6.66 -52.49 -0.35 1.63 16 34 H 0.41 6.80 8.59 -40.82 -0.35 6.45 16 35 H 0.06 1.08 7.91 -51.93 -0.41 0.67 16 36 H 0.06 1.08 7.91 -51.93 -0.41 0.67 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.15 1.24 6.41 -52.48 -0.34 0.90 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -31.17 340.22 -8.97 -40.14 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.88 Total: 4.16 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -3.22 Total: -3.57 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.07 Total: -52.68 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.17 -8.97 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273358433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.600 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds