Wall clock time and date at job start Mon Mar 30 2020 03:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 N 1.46499 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.34777 * 119.99665 * 180.27868 * 4 3 2 6 6 O 1.21593 * 120.00264 * 359.72086 * 5 4 3 7 7 C 1.47541 * 119.99728 * 179.72391 * 5 4 3 8 8 C 1.40351 * 120.47387 * 179.97438 * 7 5 4 9 9 C 1.36860 * 118.49132 * 180.02562 * 8 7 5 10 10 C 1.39395 * 119.37949 * 359.97438 * 9 8 7 11 11 N 1.38455 * 119.54044 * 179.97438 * 10 9 8 12 12 C 1.46503 * 119.99831 * 359.97438 * 11 10 9 13 13 C 1.52996 * 109.46955 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47028 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99893 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00225 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99765 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46763 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47207 * 119.99845 * 18 16 14 21 21 H 1.48503 * 109.46774 * 240.00311 * 18 16 14 22 22 N 1.32608 * 120.92090 * 0.02562 * 10 9 8 23 23 C 1.31672 * 121.63729 * 359.70030 * 22 10 9 24 24 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 26 26 H 1.09007 * 109.47288 * 60.00489 * 1 2 3 27 27 H 1.08995 * 109.47672 * 240.00331 * 2 1 3 28 28 H 1.09006 * 109.46819 * 119.99760 * 2 1 3 29 29 H 1.09009 * 109.46730 * 59.99606 * 3 2 1 30 30 H 1.08998 * 109.46846 * 300.00150 * 3 2 1 31 31 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.75443 * 359.97438 * 8 7 5 33 33 H 1.07994 * 120.30807 * 179.97438 * 9 8 7 34 34 H 0.96997 * 120.00182 * 180.02562 * 11 10 9 35 35 H 1.09002 * 109.47062 * 300.00053 * 12 11 10 36 36 H 1.08997 * 109.46930 * 59.99807 * 12 11 10 37 37 H 1.09002 * 109.47007 * 299.99754 * 13 12 11 38 38 H 1.08997 * 109.47731 * 59.99964 * 13 12 11 39 39 H 0.97006 * 119.99879 * 180.02562 * 17 16 14 40 40 H 1.08005 * 119.74440 * 180.29020 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1787 2.6099 0.0064 6 8 3.5707 3.6629 0.0060 7 6 5.6541 2.6099 0.0132 8 6 6.3658 3.8196 0.0187 9 6 7.7336 3.7722 0.0244 10 6 8.3751 2.5347 0.0250 11 7 9.7586 2.4829 0.0302 12 6 10.5380 3.7234 0.0344 13 6 12.0307 3.3879 0.0390 14 6 12.8324 4.6639 0.0427 15 1 12.3277 5.6188 0.0414 16 6 14.2103 4.6125 0.0477 17 7 14.8248 3.4498 0.0489 18 14 15.2040 6.1942 0.0530 19 1 14.2818 7.3581 0.0514 20 1 16.0556 6.2397 1.2687 21 1 16.0645 6.2421 -1.1564 22 7 7.6787 1.4062 0.0197 23 6 6.3619 1.4072 0.0196 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.8934 -0.5137 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9899 0.6025 0.0013 32 1 5.8460 4.7662 0.0177 33 1 8.3105 4.6852 0.0283 34 1 10.2119 1.6254 0.0303 35 1 10.2996 4.3053 -0.8560 36 1 10.2928 4.3035 0.9240 37 1 12.2695 2.8058 0.9292 38 1 12.2756 2.8079 -0.8508 39 1 15.7942 3.4136 0.0528 40 1 5.8254 0.4698 0.0199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273358433.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:59 Heat of formation + Delta-G solvation = -40.893762 kcal Electronic energy + Delta-G solvation = -19947.781542 eV Core-core repulsion = 16760.682665 eV Total energy + Delta-G solvation = -3187.098877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62229 -40.21116 -37.44323 -36.76380 -35.12979 -33.70189 -33.54600 -32.17831 -30.25108 -27.33381 -26.55674 -24.82550 -24.04431 -22.72724 -22.51315 -21.45750 -19.20523 -18.63361 -18.15694 -17.75186 -16.73477 -16.70829 -16.46903 -16.13163 -15.86176 -15.44450 -15.33875 -14.98218 -14.65353 -14.27710 -14.06739 -13.76496 -13.65948 -13.40403 -13.13519 -13.02411 -12.89514 -12.48392 -12.44274 -11.99977 -11.71559 -11.62580 -11.37979 -11.22219 -11.21706 -10.87324 -10.58329 -10.44893 -10.12440 -8.74311 -8.24575 -6.35407 -0.11328 0.36245 1.41794 1.43071 1.55453 1.90869 2.11963 2.20228 2.43373 2.96187 3.11126 3.52463 3.82916 3.87965 3.96876 4.03181 4.12224 4.18588 4.38649 4.41944 4.48244 4.70611 4.70771 4.78723 4.83787 4.89624 4.94981 5.16553 5.20282 5.28535 5.33124 5.36242 5.48407 5.51977 5.55784 5.71946 5.92486 6.14307 6.53743 6.54193 6.80002 7.06084 7.22655 7.34636 8.87780 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.058076 B = 0.002389 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.012329 B =11715.857670 C =12161.510623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.117 3.883 4 N -0.717 5.717 5 C 0.574 3.426 6 O -0.588 6.588 7 C -0.278 4.278 8 C 0.023 3.977 9 C -0.255 4.255 10 C 0.417 3.583 11 N -0.706 5.706 12 C 0.143 3.857 13 C 0.018 3.982 14 C -0.541 4.541 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.967 3.033 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.570 5.570 23 C 0.200 3.800 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.414 0.586 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.405 0.595 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.003 0.997 38 H 0.003 0.997 39 H 0.264 0.736 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.724 -7.401 -0.074 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.006 4.006 4 N -0.369 5.369 5 C 0.363 3.637 6 O -0.469 6.469 7 C -0.287 4.287 8 C -0.003 4.003 9 C -0.280 4.280 10 C 0.179 3.821 11 N -0.333 5.333 12 C 0.020 3.980 13 C -0.019 4.019 14 C -0.579 4.579 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.288 5.288 23 C 0.038 3.962 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.251 0.749 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.240 0.760 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.073 0.927 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -24.393 -7.321 -0.078 25.468 hybrid contribution 0.973 0.756 0.006 1.232 sum -23.420 -6.564 -0.073 24.323 Atomic orbital electron populations 1.21693 0.94179 1.02780 1.02200 1.21710 0.97221 0.93865 1.03829 1.21495 0.78551 0.98950 1.01633 1.45807 1.07896 1.08232 1.74966 1.18024 0.86799 0.83795 0.75060 1.90737 1.70667 1.32809 1.52724 1.20499 0.93509 0.95697 1.18977 1.21214 0.92668 0.98670 0.87721 1.21259 0.95433 0.97812 1.13487 1.18853 0.85655 0.90056 0.87494 1.44976 1.01812 1.10415 1.76097 1.21501 0.91121 0.84516 1.00881 1.19141 0.90006 0.96746 0.96034 1.21506 0.91854 0.93466 1.51101 0.91293 1.25933 0.99374 0.99735 0.94565 1.70090 1.09418 1.26240 1.51214 0.85366 0.78464 0.79418 0.77610 1.18319 1.20611 1.20604 1.67307 1.09519 1.28763 1.23228 1.23063 0.87990 0.97684 0.87456 0.91133 0.92543 0.92547 0.90200 0.90201 0.92409 0.92390 0.74867 0.83706 0.83859 0.75954 0.91806 0.91786 0.97905 0.97911 0.92684 0.79034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.13 -1.00 6.05 30.59 0.19 -0.82 16 3 C 0.12 1.66 5.67 86.38 0.49 2.15 16 4 N -0.72 -11.39 5.51 -466.25 -2.57 -13.96 16 5 C 0.57 13.97 7.77 86.70 0.67 14.65 16 6 O -0.59 -18.82 16.41 -4.01 -0.07 -18.88 16 7 C -0.28 -6.82 5.89 -19.99 -0.12 -6.94 16 8 C 0.02 0.62 9.65 22.46 0.22 0.84 16 9 C -0.25 -7.37 9.25 22.23 0.21 -7.17 16 10 C 0.42 13.12 7.64 133.25 1.02 14.14 16 11 N -0.71 -24.10 5.71 -345.17 -1.97 -26.07 16 12 C 0.14 5.41 4.81 86.38 0.42 5.83 16 13 C 0.02 0.89 5.09 29.85 0.15 1.04 16 14 C -0.54 -28.75 9.11 25.60 0.23 -28.52 16 15 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 16 C 0.00 0.13 5.46 84.66 0.46 0.60 16 17 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 18 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 19 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 22 N -0.57 -16.33 10.38 -192.33 -2.00 -18.33 16 23 C 0.20 4.40 10.71 85.04 0.91 5.32 16 24 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.41 3.96 6.52 -92.71 -0.60 3.35 16 32 H 0.15 3.70 7.73 -2.91 -0.02 3.68 16 33 H 0.14 3.96 6.66 -2.91 -0.02 3.94 16 34 H 0.41 13.81 8.59 -92.71 -0.80 13.01 16 35 H 0.06 2.33 7.91 -2.39 -0.02 2.31 16 36 H 0.06 2.34 7.91 -2.39 -0.02 2.32 16 37 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 40 H 0.19 2.40 6.41 -2.91 -0.02 2.38 16 Total: -1.00 -67.36 340.22 0.92 -66.44 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.35 Total: 19.56 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.56 Total: 0.72 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -6.25 Total: -112.34 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.07 Total: -18.88 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -67.36 0.92 -66.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273358433.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.549 kcal (2) G-P(sol) polarization free energy of solvation -67.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds