Wall clock time and date at job start Mon Mar 30 2020 02:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46987 * 2 1 4 4 H 1.09000 * 109.47209 * 304.99810 * 3 2 1 5 5 C 1.50698 * 109.47329 * 184.99851 * 3 2 1 6 6 H 1.08002 * 120.00231 * 240.00290 * 5 3 2 7 7 C 1.37879 * 120.00310 * 59.99475 * 5 3 2 8 8 N 1.31524 * 119.99482 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00416 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47113 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47224 * 120.00277 * 9 7 5 12 12 H 1.48503 * 109.47184 * 240.00274 * 9 7 5 13 13 N 1.46494 * 109.47318 * 64.99700 * 3 2 1 14 14 C 1.34778 * 120.00348 * 275.00306 * 13 3 2 15 15 O 1.21554 * 119.99571 * 359.97438 * 14 13 3 16 16 C 1.47824 * 120.00482 * 179.97438 * 14 13 3 17 17 C 1.39970 * 120.93827 * 323.02739 * 16 14 13 18 18 N 1.32136 * 118.92315 * 180.02562 * 17 16 14 19 19 C 1.31881 * 120.96598 * 0.02562 * 18 17 16 20 20 N 1.31858 * 122.09781 * 359.97438 * 19 18 17 21 21 C 1.32153 * 120.96720 * 0.02562 * 20 19 18 22 22 C 1.50704 * 120.53861 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47201 * 290.32661 * 22 21 20 24 24 C 1.53002 * 109.46692 * 50.32842 * 22 21 20 25 25 H 1.08996 * 109.47602 * 299.99910 * 1 2 3 26 26 H 1.09004 * 109.46663 * 60.00666 * 1 2 3 27 27 H 1.09001 * 109.46942 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47458 * 239.99556 * 2 1 3 29 29 H 1.09001 * 109.47162 * 119.99895 * 2 1 3 30 30 H 0.96994 * 119.99627 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00322 * 94.99974 * 13 3 2 32 32 H 1.07994 * 120.53564 * 0.02562 * 17 16 14 33 33 H 1.08004 * 118.95308 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.46865 * 170.32748 * 22 21 20 35 35 H 1.09003 * 109.46448 * 59.99982 * 23 22 21 36 36 H 1.08999 * 109.47205 * 179.97438 * 23 22 21 37 37 H 1.08995 * 109.47298 * 299.99829 * 23 22 21 38 38 H 1.08994 * 109.47357 * 60.00489 * 24 22 21 39 39 H 1.08999 * 109.46796 * 180.02562 * 24 22 21 40 40 H 1.09001 * 109.46872 * 299.99681 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1434 0.8784 -1.2278 8 7 3.4062 0.3373 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5988 1.5444 -0.1930 11 1 6.4963 -0.5189 -1.4624 12 1 6.4000 1.6157 -2.6090 13 7 1.6524 2.0975 1.2517 14 6 0.4350 2.6644 1.3669 15 8 -0.3411 2.6325 0.4319 16 6 0.0437 3.3248 2.6301 17 6 0.4390 2.8033 3.8674 18 7 0.0663 3.4256 4.9718 19 6 -0.6667 4.5207 4.9192 20 7 -1.0608 5.0457 3.7757 21 6 -0.7335 4.4886 2.6229 22 6 -1.1897 5.0965 1.3216 23 6 -2.7021 4.9162 1.1769 24 6 -0.8503 6.5884 1.3092 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0605 -2.9501 31 1 2.2718 2.1232 1.9977 32 1 1.0390 1.9068 3.9185 33 1 -0.9534 5.0028 5.8422 34 1 -0.6838 4.6019 0.4924 35 1 -3.2078 5.4109 2.0062 36 1 -3.0321 5.3564 0.2360 37 1 -2.9438 3.8535 1.1858 38 1 0.2271 6.7169 1.4122 39 1 -1.1807 7.0283 0.3682 40 1 -1.3562 7.0830 2.1384 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273845713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:16 Heat of formation + Delta-G solvation = -6.925538 kcal Electronic energy + Delta-G solvation = -22042.283904 eV Core-core repulsion = 18856.657999 eV Total energy + Delta-G solvation = -3185.625904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26364 -38.90383 -36.14791 -35.03997 -33.15316 -32.48837 -31.69931 -30.59356 -27.14937 -27.04603 -25.08971 -24.73929 -23.02992 -20.81733 -20.77550 -19.52928 -17.78770 -17.74203 -16.68758 -15.89123 -15.57536 -14.97525 -14.62148 -14.44953 -14.15059 -13.99694 -13.63900 -13.33185 -13.01621 -12.75652 -12.18895 -12.09250 -11.67864 -11.52517 -11.47340 -11.30965 -11.22945 -11.08236 -10.94147 -10.71163 -10.51106 -10.33140 -10.27628 -9.70032 -9.50424 -9.26217 -9.19030 -9.07825 -8.57749 -7.95937 -6.19346 -4.29057 0.61233 1.01322 3.19089 3.20139 3.28292 3.30487 3.73575 3.88112 4.00707 4.09002 4.30712 4.35278 4.91293 5.05812 5.12946 5.19212 5.25364 5.39990 5.46559 5.74571 5.77142 5.92078 6.00012 6.10497 6.27490 6.32283 6.34220 6.37900 6.47695 6.57800 6.89608 6.96336 7.10660 7.24075 7.31029 7.52819 7.63212 7.80492 7.99463 8.09217 8.48911 8.66723 8.92736 9.38312 10.85988 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.004936 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.655778 B = 5671.471459 C = 5853.329026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.696 5.696 14 C 0.552 3.448 15 O -0.529 6.529 16 C -0.225 4.225 17 C 0.176 3.824 18 N -0.527 5.527 19 C 0.300 3.700 20 N -0.519 5.519 21 C 0.232 3.768 22 C -0.063 4.063 23 C -0.130 4.130 24 C -0.139 4.139 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.173 0.827 33 H 0.196 0.804 34 H 0.117 0.883 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 6.997 9.642 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.343 5.343 14 C 0.335 3.665 15 O -0.408 6.408 16 C -0.233 4.233 17 C 0.009 3.991 18 N -0.241 5.241 19 C 0.013 3.987 20 N -0.232 5.232 21 C 0.085 3.915 22 C -0.082 4.082 23 C -0.187 4.187 24 C -0.197 4.197 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.190 0.810 33 H 0.213 0.787 34 H 0.135 0.865 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.766 7.300 9.619 14.357 hybrid contribution 1.614 -0.562 -0.306 1.736 sum -6.151 6.738 9.313 13.038 Atomic orbital electron populations 1.21847 0.98287 0.98204 1.01184 1.21949 0.92627 0.99609 1.02497 1.18879 0.94437 0.89237 0.80545 0.92962 1.21239 0.90535 1.39213 1.06432 0.92002 1.24872 0.98660 0.94689 0.95329 1.69898 1.35107 1.37498 1.09311 0.86400 0.84764 0.77834 0.78165 1.19741 1.20822 1.20839 1.46518 1.13912 1.54960 1.18864 1.17702 0.83363 0.79423 0.86025 1.90741 1.51348 1.59356 1.39400 1.22028 1.03897 1.00065 0.97263 1.23505 0.91900 0.97127 0.86542 1.68402 1.13707 1.10042 1.31969 1.25076 0.88900 0.88532 0.96199 1.68246 1.23129 1.33422 0.98453 1.21850 0.86732 0.88374 0.94545 1.20522 0.98417 0.96627 0.92600 1.21646 0.93098 1.02234 1.01764 1.21776 1.01372 0.94218 1.02292 0.94450 0.93005 0.95739 0.88100 0.94912 0.92530 0.77867 0.81001 0.78706 0.86544 0.92561 0.91820 0.92324 0.93051 0.91944 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.51 37.16 0.32 -2.61 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 3 C 0.27 6.40 2.24 -69.09 -0.15 6.24 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.51 8.73 -34.44 -0.30 -13.81 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.76 5.29 -17.81 -0.09 1.66 16 8 N -0.88 -23.80 11.30 55.43 0.63 -23.18 16 9 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -0.70 -13.47 4.96 -55.89 -0.28 -13.75 16 14 C 0.55 10.29 5.59 -12.34 -0.07 10.22 16 15 O -0.53 -11.19 11.66 5.32 0.06 -11.13 16 16 C -0.22 -3.55 5.80 -104.69 -0.61 -4.15 16 17 C 0.18 2.43 10.64 -16.77 -0.18 2.25 16 18 N -0.53 -7.04 10.42 -14.24 -0.15 -7.19 16 19 C 0.30 3.66 12.27 -92.03 -1.13 2.53 16 20 N -0.52 -7.13 9.89 -10.48 -0.10 -7.23 16 21 C 0.23 3.50 5.55 -81.82 -0.45 3.05 16 22 C -0.06 -0.91 2.72 -91.77 -0.25 -1.16 16 23 C -0.13 -1.69 9.18 37.16 0.34 -1.35 16 24 C -0.14 -1.72 9.02 37.16 0.34 -1.38 16 25 H 0.04 0.77 5.65 -51.93 -0.29 0.47 16 26 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 31 H 0.39 6.60 7.89 -40.82 -0.32 6.28 16 32 H 0.17 2.02 7.80 -52.49 -0.41 1.61 16 33 H 0.20 1.61 8.06 -52.48 -0.42 1.19 16 34 H 0.12 1.99 5.32 -51.93 -0.28 1.71 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 LS Contribution 327.11 15.07 4.93 4.93 Total: -1.00 -28.35 327.11 -8.07 -36.42 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.74 Total: 7.73 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.39 Total: -1.61 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.10 Total: -51.35 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.06 Total: -11.13 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.35 -8.07 -36.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273845713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.491 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds