Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47398 * 305.00335 * 3 2 1 5 5 C 1.50703 * 109.46912 * 185.00257 * 3 2 1 6 6 H 1.08003 * 119.99742 * 240.00283 * 5 3 2 7 7 C 1.37873 * 119.99873 * 60.00145 * 5 3 2 8 8 N 1.31509 * 120.00433 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99975 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47061 * 59.99778 * 9 7 5 11 11 H 1.48494 * 109.47452 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46988 * 300.00348 * 9 7 5 13 13 N 1.46500 * 109.47023 * 65.00406 * 3 2 1 14 14 C 1.34779 * 119.99793 * 274.99565 * 13 3 2 15 15 O 1.21279 * 120.00185 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99614 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.46075 * 59.98941 * 16 14 13 18 18 C 1.53109 * 109.46154 * 179.97438 * 16 14 13 19 19 C 1.53357 * 109.51404 * 190.28240 * 18 16 14 20 20 C 1.50830 * 108.38447 * 310.07702 * 19 18 16 21 21 N 1.34324 * 128.03268 * 196.64150 * 20 19 18 22 22 H 0.97003 * 126.09000 * 359.76714 * 21 20 19 23 23 N 1.40292 * 107.81892 * 179.78746 * 21 20 19 24 24 C 1.31076 * 108.26739 * 0.06829 * 23 21 20 25 25 C 1.35746 * 124.12012 * 16.52001 * 20 19 18 26 26 C 1.50836 * 124.11396 * 0.22528 * 25 20 19 27 27 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 28 28 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 30 30 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 31 31 H 1.08991 * 109.47210 * 120.00501 * 2 1 3 32 32 H 0.97001 * 120.00323 * 179.97438 * 8 7 5 33 33 H 0.97004 * 120.00223 * 94.99655 * 13 3 2 34 34 H 1.09000 * 109.46826 * 310.30483 * 18 16 14 35 35 H 1.09001 * 109.45991 * 70.28478 * 18 16 14 36 36 H 1.08999 * 109.69511 * 190.34812 * 19 18 16 37 37 H 1.08995 * 109.69247 * 69.80832 * 19 18 16 38 38 H 1.08000 * 125.95931 * 179.97438 * 24 23 21 39 39 H 1.09005 * 109.68186 * 256.80468 * 26 25 20 40 40 H 1.09000 * 109.71803 * 136.27282 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3820 10 1 6.5975 0.1474 -0.2351 11 1 6.3977 0.2180 -2.6511 12 1 6.4994 2.2817 -1.3823 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6319 0.4345 16 6 0.0363 3.3375 2.6550 17 1 0.7280 4.1527 2.8681 18 6 -1.3834 3.8948 2.5210 19 6 -1.6958 4.7954 3.7223 20 6 -1.3437 4.0459 4.9830 21 7 -1.7277 4.3166 6.2414 22 1 -2.2961 5.0517 6.5197 23 7 -1.1599 3.3471 7.0815 24 6 -0.4567 2.5240 6.3425 25 6 -0.5547 2.9418 5.0172 26 6 0.0805 2.3179 3.7997 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0611 -2.9499 33 1 2.2720 2.1231 1.9979 34 1 -1.4604 4.4756 1.6018 35 1 -2.0958 3.0704 2.4904 36 1 -2.7567 5.0453 3.7281 37 1 -1.1038 5.7085 3.6606 38 1 0.1017 1.6710 6.6989 39 1 -0.4722 1.4225 3.5152 40 1 1.1158 2.0561 4.0184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273921892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = 13.267370 kcal Electronic energy + Delta-G solvation = -21810.541742 eV Core-core repulsion = 18625.791468 eV Total energy + Delta-G solvation = -3184.750274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60707 -39.25368 -36.18019 -34.84531 -32.80373 -32.23480 -30.96210 -29.56350 -29.33846 -26.84420 -23.96409 -23.24733 -22.40521 -21.86259 -20.04795 -19.27275 -18.73792 -17.64257 -16.91675 -15.75780 -15.36376 -15.08041 -14.73453 -14.47182 -14.24554 -13.76091 -13.51739 -13.23957 -13.01674 -12.87377 -12.63154 -12.19507 -11.75679 -11.56615 -11.39273 -11.19095 -11.00307 -10.83072 -10.81260 -10.75642 -10.53116 -10.29867 -10.12391 -9.61303 -9.59267 -9.02886 -8.85245 -8.46884 -8.36496 -7.76721 -6.10264 -4.19630 1.75698 2.70099 2.72326 3.26556 3.32131 3.33071 3.45560 4.09609 4.38238 4.51271 4.70393 4.76599 4.94378 5.12166 5.21054 5.31820 5.38526 5.44106 5.55295 5.64611 5.78097 5.92422 6.02435 6.20198 6.27439 6.37741 6.42394 6.49668 6.58303 6.69764 7.07587 7.15527 7.23148 7.40546 7.50927 7.55374 7.64754 7.76992 7.93590 8.21449 8.72579 8.80779 9.19729 9.48172 10.94887 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.004122 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.362189 B = 6791.796032 C = 7137.728700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.707 5.707 14 C 0.506 3.494 15 O -0.550 6.550 16 C -0.109 4.109 17 H 0.092 0.908 18 C -0.092 4.092 19 C -0.058 4.058 20 C 0.089 3.911 21 N -0.474 5.474 22 H 0.435 0.565 23 N -0.304 5.304 24 C 0.060 3.940 25 C -0.232 4.232 26 C -0.030 4.030 27 H 0.048 0.952 28 H 0.021 0.979 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.183 0.817 39 H 0.075 0.925 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 6.648 13.300 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.291 3.709 15 O -0.429 6.429 16 C -0.131 4.131 17 H 0.110 0.890 18 C -0.130 4.130 19 C -0.097 4.097 20 C -0.041 4.041 21 N -0.181 5.181 22 H 0.279 0.721 23 N -0.126 5.126 24 C -0.126 4.126 25 C -0.243 4.243 26 C -0.069 4.069 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.220 0.780 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.200 0.800 39 H 0.093 0.907 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.909 6.764 13.607 17.614 hybrid contribution 1.341 0.116 -0.290 1.377 sum -7.568 6.880 13.316 16.791 Atomic orbital electron populations 1.21839 0.98375 0.97945 1.01247 1.21925 0.92583 0.99864 1.02211 1.18758 0.94058 0.89179 0.81177 0.93408 1.21210 0.90834 1.38990 1.06226 0.92189 1.24874 0.98485 0.94840 0.95422 1.69882 1.35172 1.37596 1.09340 0.86542 0.85028 0.78281 0.77433 1.20168 1.21178 1.20236 1.46500 1.14715 1.55862 1.18384 1.20241 0.82696 0.79309 0.88699 1.90659 1.51512 1.60007 1.40713 1.21417 0.98549 0.99000 0.94107 0.89005 1.21326 0.95674 0.99390 0.96626 1.20445 1.01933 0.98064 0.89253 1.21054 0.97996 0.97689 0.87357 1.46011 1.42011 1.25600 1.04475 0.72129 1.77468 1.16004 1.02005 1.17156 1.23625 0.98282 0.98999 0.91652 1.19918 1.08405 1.00454 0.95555 1.19932 1.00562 0.96961 0.89445 0.93247 0.95986 0.94153 0.88421 0.95055 0.92552 0.78005 0.89703 0.90865 0.90051 0.89629 0.79974 0.90656 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.61 2.24 -69.08 -0.15 6.46 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.84 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.71 -13.92 4.93 -54.93 -0.27 -14.19 16 14 C 0.51 9.30 5.71 -10.98 -0.06 9.24 16 15 O -0.55 -12.06 12.94 5.56 0.07 -11.98 16 16 C -0.11 -1.47 2.49 -91.53 -0.23 -1.69 16 17 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16 18 C -0.09 -1.11 4.64 -26.49 -0.12 -1.23 16 19 C -0.06 -0.52 6.30 -27.63 -0.17 -0.70 16 20 C 0.09 0.96 7.08 -82.33 -0.58 0.38 16 21 N -0.47 -4.84 7.34 33.48 0.25 -4.59 16 22 H 0.44 3.03 8.96 -182.45 -1.64 1.39 16 23 N -0.30 -3.78 12.71 30.55 0.39 -3.39 16 24 C 0.06 0.70 12.00 -17.48 -0.21 0.49 16 25 C -0.23 -2.77 5.91 -105.05 -0.62 -3.39 16 26 C -0.03 -0.37 5.41 -27.63 -0.15 -0.52 16 27 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 30 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.39 6.68 8.20 -40.82 -0.33 6.34 16 34 H 0.08 1.09 7.75 -51.93 -0.40 0.69 16 35 H 0.07 0.96 8.11 -51.93 -0.42 0.53 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 40 H 0.08 0.89 7.89 -51.93 -0.41 0.48 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -31.04 320.69 -8.76 -39.80 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.10 Total: 7.28 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.53 Total: -9.28 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.99 Total: -46.01 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.98 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.04 -8.76 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273921892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.072 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds