Wall clock time and date at job start Mon Mar 30 2020 02:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46846 * 2 1 4 4 H 1.09002 * 109.47398 * 305.00335 * 3 2 1 5 5 C 1.50703 * 109.46912 * 185.00257 * 3 2 1 6 6 H 1.08003 * 119.99742 * 240.00283 * 5 3 2 7 7 C 1.37873 * 119.99873 * 60.00145 * 5 3 2 8 8 N 1.31509 * 120.00433 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99975 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47061 * 59.99778 * 9 7 5 11 11 H 1.48494 * 109.47452 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46988 * 300.00348 * 9 7 5 13 13 N 1.46500 * 109.47023 * 65.00406 * 3 2 1 14 14 C 1.34779 * 119.99793 * 274.99565 * 13 3 2 15 15 O 1.21279 * 120.00185 * 0.02562 * 14 13 3 16 16 C 1.50702 * 119.99614 * 179.97438 * 14 13 3 17 17 H 1.09005 * 109.46075 * 59.98941 * 16 14 13 18 18 C 1.53109 * 109.46154 * 179.97438 * 16 14 13 19 19 C 1.53357 * 109.51404 * 190.28240 * 18 16 14 20 20 C 1.50830 * 108.38447 * 310.07702 * 19 18 16 21 21 N 1.34324 * 128.03268 * 196.64150 * 20 19 18 22 22 H 0.97003 * 126.09000 * 359.76714 * 21 20 19 23 23 N 1.40292 * 107.81892 * 179.78746 * 21 20 19 24 24 C 1.31076 * 108.26739 * 0.06829 * 23 21 20 25 25 C 1.35746 * 124.12012 * 16.52001 * 20 19 18 26 26 C 1.50836 * 124.11396 * 0.22528 * 25 20 19 27 27 H 1.09001 * 109.47241 * 59.99481 * 1 2 3 28 28 H 1.08996 * 109.46751 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46824 * 299.99583 * 1 2 3 30 30 H 1.09002 * 109.46824 * 240.00417 * 2 1 3 31 31 H 1.08991 * 109.47210 * 120.00501 * 2 1 3 32 32 H 0.97001 * 120.00323 * 179.97438 * 8 7 5 33 33 H 0.97004 * 120.00223 * 94.99655 * 13 3 2 34 34 H 1.09000 * 109.46826 * 310.30483 * 18 16 14 35 35 H 1.09001 * 109.45991 * 70.28478 * 18 16 14 36 36 H 1.08999 * 109.69511 * 190.34812 * 19 18 16 37 37 H 1.08995 * 109.69247 * 69.80832 * 19 18 16 38 38 H 1.08000 * 125.95931 * 179.97438 * 24 23 21 39 39 H 1.09005 * 109.68186 * 256.80468 * 26 25 20 40 40 H 1.09000 * 109.71803 * 136.27282 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8814 -1.3820 10 1 6.5975 0.1474 -0.2351 11 1 6.3977 0.2180 -2.6511 12 1 6.4994 2.2817 -1.3823 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6319 0.4345 16 6 0.0363 3.3375 2.6550 17 1 0.7280 4.1527 2.8681 18 6 -1.3834 3.8948 2.5210 19 6 -1.6958 4.7954 3.7223 20 6 -1.3437 4.0459 4.9830 21 7 -1.7277 4.3166 6.2414 22 1 -2.2961 5.0517 6.5197 23 7 -1.1599 3.3471 7.0815 24 6 -0.4567 2.5240 6.3425 25 6 -0.5547 2.9418 5.0172 26 6 0.0805 2.3179 3.7997 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0611 -2.9499 33 1 2.2720 2.1231 1.9979 34 1 -1.4604 4.4756 1.6018 35 1 -2.0958 3.0704 2.4904 36 1 -2.7567 5.0453 3.7281 37 1 -1.1038 5.7085 3.6606 38 1 0.1017 1.6710 6.6989 39 1 -0.4722 1.4225 3.5152 40 1 1.1158 2.0561 4.0184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273921892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:29 Heat of formation + Delta-G solvation = -7.293000 kcal Electronic energy + Delta-G solvation = -21811.433306 eV Core-core repulsion = 18625.791468 eV Total energy + Delta-G solvation = -3185.641839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.47286 -40.74272 -37.45735 -36.49052 -34.28343 -33.53573 -32.68651 -30.46620 -30.45380 -28.70464 -25.25650 -24.71962 -23.62452 -22.78004 -21.66262 -20.90794 -19.71083 -18.88816 -18.23477 -17.36528 -17.07402 -16.35191 -16.11837 -15.79121 -15.29831 -14.80218 -14.72645 -14.69162 -14.51772 -13.95371 -13.78055 -13.61509 -13.38211 -13.13747 -12.87475 -12.76612 -12.61966 -12.58389 -12.15041 -11.98290 -11.82250 -11.68307 -11.55409 -11.44781 -10.99936 -10.53782 -10.43106 -10.35615 -9.52106 -9.23383 -8.11787 -6.28738 0.93192 1.47461 1.48695 1.56375 1.83187 1.93975 2.02116 2.40241 2.74855 3.17565 3.66183 3.75123 3.91600 3.95555 4.20134 4.25155 4.47350 4.54851 4.58960 4.62526 4.63164 4.73566 4.82087 4.92162 4.99827 5.02222 5.13807 5.24061 5.31269 5.36750 5.40985 5.50115 5.61964 5.71092 5.72784 5.86527 6.00426 6.23456 6.44919 6.73817 6.80323 7.10917 7.39015 7.70542 8.93053 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.004122 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.362189 B = 6791.796032 C = 7137.728700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.705 5.705 14 C 0.503 3.497 15 O -0.588 6.588 16 C -0.096 4.096 17 H 0.111 0.889 18 C -0.090 4.090 19 C -0.048 4.048 20 C 0.094 3.906 21 N -0.465 5.465 22 H 0.449 0.551 23 N -0.330 5.330 24 C 0.055 3.945 25 C -0.253 4.253 26 C -0.022 4.022 27 H 0.024 0.976 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.402 0.598 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.202 0.798 39 H 0.062 0.938 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 7.594 15.304 18.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.353 5.353 14 C 0.290 3.710 15 O -0.469 6.469 16 C -0.118 4.118 17 H 0.129 0.871 18 C -0.129 4.129 19 C -0.086 4.086 20 C -0.037 4.037 21 N -0.173 5.173 22 H 0.295 0.705 23 N -0.153 5.153 24 C -0.130 4.130 25 C -0.264 4.264 26 C -0.061 4.061 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.218 0.782 39 H 0.080 0.920 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.540 7.735 15.668 19.448 hybrid contribution 1.160 -0.149 -0.936 1.497 sum -7.380 7.586 14.732 18.140 Atomic orbital electron populations 1.21674 0.96983 0.98968 1.00351 1.21771 0.93730 0.99285 1.01143 1.18321 0.93392 0.89145 0.81693 0.98485 1.21578 0.91663 1.38737 1.06561 0.91105 1.25733 1.03045 0.94483 0.95120 1.70042 1.37017 1.38446 1.09855 0.85481 0.79481 0.78391 0.77466 1.18981 1.21378 1.19718 1.46279 1.15786 1.55998 1.17284 1.21118 0.81509 0.78341 0.89985 1.90646 1.52425 1.61199 1.42638 1.21382 0.99792 0.99281 0.91317 0.87112 1.21284 0.94311 0.99407 0.97858 1.20435 1.03932 0.97590 0.86672 1.21276 0.97077 0.97325 0.87988 1.46019 1.41705 1.25575 1.04043 0.70482 1.77435 1.16901 1.02858 1.18082 1.23974 0.98092 0.99382 0.91504 1.19933 1.09619 1.01451 0.95406 1.19814 1.01106 0.96008 0.89154 0.95702 0.93897 0.93396 0.91306 0.94078 0.92718 0.76320 0.90640 0.92212 0.87545 0.87570 0.78177 0.91993 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.12 -5.84 5.45 30.60 0.17 -5.68 16 3 C 0.28 13.94 2.24 44.25 0.10 14.04 16 4 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 5 C -0.55 -28.45 8.73 25.60 0.22 -28.23 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.92 -52.03 11.29 21.44 0.24 -51.79 16 9 Si 0.97 41.66 29.54 68.60 2.03 43.68 16 10 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 N -0.70 -27.67 4.93 -446.09 -2.20 -29.87 16 14 C 0.50 18.44 5.71 87.66 0.50 18.94 16 15 O -0.59 -26.37 12.94 -3.03 -0.04 -26.41 16 16 C -0.10 -2.44 2.49 -11.38 -0.03 -2.47 16 17 H 0.11 2.44 8.11 -2.38 -0.02 2.42 16 18 C -0.09 -2.03 4.64 30.75 0.14 -1.88 16 19 C -0.05 -0.71 6.30 30.01 0.19 -0.52 16 20 C 0.09 1.77 7.08 41.64 0.29 2.07 16 21 N -0.46 -8.25 7.34 -47.99 -0.35 -8.60 16 22 H 0.45 4.96 8.96 -213.19 -1.91 3.05 16 23 N -0.33 -7.51 12.71 -57.27 -0.73 -8.24 16 24 C 0.06 1.17 12.00 85.06 1.02 2.19 16 25 C -0.25 -5.48 5.91 -20.14 -0.12 -5.60 16 26 C -0.02 -0.51 5.41 30.01 0.16 -0.35 16 27 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 2.02 5.64 -2.39 -0.01 2.01 16 30 H 0.07 3.77 5.95 -2.39 -0.01 3.76 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.40 13.40 8.20 -92.71 -0.76 12.64 16 34 H 0.07 1.86 7.75 -2.39 -0.02 1.84 16 35 H 0.06 1.50 8.11 -2.39 -0.02 1.48 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 39 H 0.06 1.58 8.12 -2.38 -0.02 1.56 16 40 H 0.09 1.81 7.89 -2.39 -0.02 1.79 16 Total: -1.00 -68.38 320.69 1.06 -67.32 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -1.60 Total: 24.90 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 3.71 Total: -10.99 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -3.04 Total: -98.50 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.04 Total: -26.41 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -68.38 1.06 -67.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273921892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.031 kcal (2) G-P(sol) polarization free energy of solvation -68.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds