Wall clock time and date at job start Mon Mar 30 2020 02:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47362 * 2 1 4 4 H 1.08997 * 109.47198 * 55.00337 * 3 2 1 5 5 C 1.50704 * 109.47191 * 175.00521 * 3 2 1 6 6 H 1.08001 * 120.00306 * 120.00107 * 5 3 2 7 7 C 1.37880 * 119.99668 * 300.00028 * 5 3 2 8 8 N 1.31517 * 119.99884 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00106 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46843 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47321 * 119.99487 * 9 7 5 12 12 H 1.48500 * 109.47389 * 239.99806 * 9 7 5 13 13 N 1.46503 * 109.47098 * 294.99960 * 3 2 1 14 14 C 1.34783 * 119.99589 * 85.00298 * 13 3 2 15 15 O 1.21271 * 120.00137 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99682 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.46465 * 300.01728 * 16 14 13 18 18 C 1.53212 * 109.44708 * 180.02562 * 16 14 13 19 19 C 1.53362 * 109.45307 * 169.71924 * 18 16 14 20 20 C 1.50824 * 108.41561 * 49.93476 * 19 18 16 21 21 N 1.34318 * 128.03813 * 163.41150 * 20 19 18 22 22 H 0.97006 * 126.09067 * 0.14930 * 21 20 19 23 23 N 1.40294 * 107.82046 * 180.13156 * 21 20 19 24 24 C 1.31075 * 108.26970 * 359.93562 * 23 21 20 25 25 C 1.35751 * 124.11888 * 343.44641 * 20 19 18 26 26 C 1.50842 * 124.11175 * 359.77806 * 25 20 19 27 27 H 1.09000 * 109.46812 * 300.00402 * 1 2 3 28 28 H 1.09004 * 109.47093 * 59.99305 * 1 2 3 29 29 H 1.08996 * 109.47653 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46673 * 239.99908 * 2 1 3 31 31 H 1.09003 * 109.47431 * 120.00277 * 2 1 3 32 32 H 0.96998 * 119.99623 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00655 * 264.99580 * 13 3 2 34 34 H 1.09001 * 109.50724 * 49.71190 * 18 16 14 35 35 H 1.09007 * 109.47206 * 289.70275 * 18 16 14 36 36 H 1.09002 * 109.68257 * 290.19043 * 19 18 16 37 37 H 1.08999 * 109.68084 * 169.67460 * 19 18 16 38 38 H 1.07993 * 125.96195 * 180.02562 * 24 23 21 39 39 H 1.09000 * 109.67932 * 103.18689 * 26 25 20 40 40 H 1.08996 * 109.68058 * 223.70305 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1237 6 1 4.1473 1.8888 -0.6524 7 6 4.1434 0.8782 1.2278 8 7 3.4063 0.3373 2.1732 9 14 6.0050 0.8809 1.3816 10 1 6.5988 1.5460 0.1940 11 1 6.3992 1.6164 2.6100 12 1 6.4971 -0.5178 1.4628 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3394 2.6320 -0.4344 16 6 0.0367 3.3387 -2.6544 17 1 0.7284 4.1540 -2.8667 18 6 -1.3841 3.8961 -2.5199 19 6 -1.6950 4.7975 -3.7211 20 6 -1.3425 4.0491 -4.9822 21 7 -1.7248 4.3218 -6.2407 22 1 -2.2929 5.0573 -6.5186 23 7 -1.1559 3.3536 -7.0815 24 6 -0.4537 2.5293 -6.3429 25 6 -0.5536 2.9449 -5.0171 26 6 0.0811 2.3200 -3.7999 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 3.8294 -0.0606 2.9501 33 1 2.2720 2.1232 -1.9978 34 1 -1.4618 4.4764 -1.6005 35 1 -2.0966 3.0717 -2.4903 36 1 -1.1025 5.7103 -3.6581 37 1 -2.7557 5.0481 -3.7272 38 1 0.1050 1.6769 -6.6999 39 1 -0.4719 1.4245 -3.5164 40 1 1.1162 2.0581 -4.0192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273921894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:33 Heat of formation + Delta-G solvation = -7.394624 kcal Electronic energy + Delta-G solvation = -21811.019300 eV Core-core repulsion = 18625.373054 eV Total energy + Delta-G solvation = -3185.646245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.47156 -40.74168 -37.45403 -36.49017 -34.28372 -33.53615 -32.68674 -30.46578 -30.45113 -28.70686 -25.25872 -24.71848 -23.62514 -22.77980 -21.66349 -20.90723 -19.71079 -18.88990 -18.23592 -17.36736 -17.07822 -16.35158 -16.11331 -15.78795 -15.29810 -14.80168 -14.72668 -14.69465 -14.52361 -13.95241 -13.78035 -13.61664 -13.38680 -13.15212 -12.84163 -12.77132 -12.66128 -12.58765 -12.10838 -11.98513 -11.82210 -11.68301 -11.55651 -11.44951 -10.97982 -10.55145 -10.43099 -10.35840 -9.52072 -9.23305 -8.12374 -6.28991 0.93236 1.45767 1.47539 1.58714 1.83228 1.94051 2.02140 2.40025 2.74799 3.17268 3.66218 3.75090 3.91688 3.95604 4.20154 4.25206 4.47357 4.54760 4.58981 4.62470 4.63117 4.73558 4.82071 4.92190 4.99896 5.02289 5.13777 5.24070 5.31278 5.36774 5.40963 5.50119 5.62128 5.71204 5.72840 5.86433 6.00246 6.23374 6.44955 6.73849 6.80632 7.10883 7.38845 7.70542 8.92929 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027368 B = 0.004122 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.831967 B = 6791.280266 C = 7138.185309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.280 1.280 13 N -0.705 5.705 14 C 0.503 3.497 15 O -0.588 6.588 16 C -0.096 4.096 17 H 0.111 0.889 18 C -0.090 4.090 19 C -0.048 4.048 20 C 0.094 3.906 21 N -0.464 5.464 22 H 0.449 0.551 23 N -0.330 5.330 24 C 0.055 3.945 25 C -0.253 4.253 26 C -0.022 4.022 27 H 0.024 0.976 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.263 0.737 33 H 0.402 0.598 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.202 0.798 39 H 0.062 0.938 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 7.625 -15.326 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.354 5.354 14 C 0.291 3.709 15 O -0.469 6.469 16 C -0.118 4.118 17 H 0.129 0.871 18 C -0.128 4.128 19 C -0.086 4.086 20 C -0.037 4.037 21 N -0.173 5.173 22 H 0.295 0.705 23 N -0.153 5.153 24 C -0.130 4.130 25 C -0.264 4.264 26 C -0.061 4.061 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.218 0.782 39 H 0.080 0.920 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.552 7.774 -15.698 19.494 hybrid contribution 1.154 -0.168 0.958 1.509 sum -7.398 7.606 -14.740 18.162 Atomic orbital electron populations 1.21673 0.96979 0.98968 1.00356 1.21770 0.93736 0.99281 1.01143 1.18329 0.93421 0.89152 0.81705 0.98465 1.21637 0.91651 1.38528 1.06502 0.91097 1.25740 1.03043 0.94520 0.95144 1.70060 1.36859 1.38596 1.09873 0.85372 0.79515 0.77733 0.78150 1.18448 1.21152 1.20613 1.46280 1.15785 1.56004 1.17283 1.21119 0.81505 0.78344 0.89980 1.90644 1.52425 1.61209 1.42623 1.21403 0.99788 0.99270 0.91314 0.87112 1.21304 0.94294 0.99397 0.97852 1.20435 1.03934 0.97598 0.86675 1.21273 0.97094 0.97306 0.87990 1.46019 1.41715 1.25591 1.04012 0.70482 1.77435 1.16886 1.02898 1.18060 1.23972 0.98103 0.99370 0.91506 1.19937 1.09612 1.01473 0.95398 1.19815 1.01106 0.96012 0.89152 0.95703 0.93390 0.93898 0.94063 0.91321 0.92739 0.76324 0.90630 0.92206 0.87571 0.87550 0.78178 0.91989 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.52 71.98 0.61 -4.82 16 2 C -0.12 -5.84 5.45 30.59 0.17 -5.67 16 3 C 0.28 13.90 2.24 44.24 0.10 14.00 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.54 -28.33 8.73 25.60 0.22 -28.10 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -52.01 11.29 21.45 0.24 -51.76 16 9 Si 0.97 41.71 29.54 68.60 2.03 43.73 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 13 N -0.71 -27.66 4.93 -446.09 -2.20 -29.85 16 14 C 0.50 18.43 5.71 87.66 0.50 18.93 16 15 O -0.59 -26.35 12.94 -3.00 -0.04 -26.39 16 16 C -0.10 -2.44 2.50 -11.35 -0.03 -2.47 16 17 H 0.11 2.44 8.11 -2.39 -0.02 2.42 16 18 C -0.09 -2.02 4.65 30.79 0.14 -1.88 16 19 C -0.05 -0.71 6.30 30.01 0.19 -0.52 16 20 C 0.09 1.77 7.08 41.64 0.29 2.07 16 21 N -0.46 -8.24 7.34 -47.99 -0.35 -8.60 16 22 H 0.45 4.96 8.96 -213.19 -1.91 3.05 16 23 N -0.33 -7.51 12.71 -57.28 -0.73 -8.24 16 24 C 0.06 1.17 12.00 85.06 1.02 2.19 16 25 C -0.25 -5.48 5.91 -20.14 -0.12 -5.60 16 26 C -0.02 -0.51 5.41 30.01 0.16 -0.35 16 27 H 0.02 1.18 7.85 -2.39 -0.02 1.17 16 28 H 0.05 2.02 5.64 -2.38 -0.01 2.01 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.07 3.77 5.95 -2.39 -0.01 3.75 16 32 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.40 13.40 8.20 -92.71 -0.76 12.64 16 34 H 0.08 1.86 7.76 -2.39 -0.02 1.84 16 35 H 0.06 1.50 8.11 -2.38 -0.02 1.48 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.20 3.20 8.06 -2.91 -0.02 3.17 16 39 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 40 H 0.09 1.81 7.89 -2.39 -0.02 1.79 16 Total: -1.00 -68.43 320.70 1.06 -67.37 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -1.60 Total: 24.69 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 3.71 Total: -10.95 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -3.04 Total: -98.46 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.04 Total: -26.39 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -68.43 1.06 -67.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273921894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.979 kcal (2) G-P(sol) polarization free energy of solvation -68.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds