Wall clock time and date at job start Mon Mar 30 2020 02:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50693 * 119.99790 * 2 1 4 4 N 1.46498 * 109.47312 * 125.00362 * 3 2 1 5 5 C 1.46760 * 124.34621 * 270.00135 * 4 3 2 6 6 C 1.54835 * 105.49343 * 197.01403 * 5 4 3 7 7 C 1.54632 * 101.60049 * 334.56221 * 6 5 4 8 8 H 1.09006 * 110.48394 * 143.57325 * 7 6 5 9 9 N 1.46905 * 110.48836 * 266.08212 * 7 6 5 10 10 C 1.46894 * 110.99762 * 47.92755 * 9 7 6 11 11 C 1.50700 * 109.46980 * 164.09992 * 10 9 7 12 12 H 1.07995 * 120.00173 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00238 * 179.72780 * 11 10 9 14 14 N 1.31521 * 119.99805 * 0.27331 * 13 11 10 15 15 Si 1.86800 * 120.00204 * 180.27317 * 13 11 10 16 16 H 1.48500 * 109.46919 * 59.99808 * 15 13 11 17 17 H 1.48503 * 109.46828 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46926 * 299.99849 * 15 13 11 19 19 C 1.46898 * 110.99737 * 283.97622 * 9 7 6 20 20 C 1.53002 * 109.47436 * 287.81637 * 19 9 7 21 21 C 1.47200 * 109.47141 * 179.34517 * 20 19 9 22 22 N 9.63611 * 141.68405 * 87.90094 * 2 1 3 23 23 C 1.34422 * 124.35394 * 89.96771 * 4 3 2 24 24 O 1.21287 * 124.93931 * 359.65600 * 23 4 3 25 25 H 1.08006 * 120.00058 * 180.02562 * 1 2 3 26 26 H 1.07992 * 119.99675 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99765 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47656 * 4.99485 * 3 2 1 29 29 H 1.09003 * 109.46957 * 244.99940 * 3 2 1 30 30 H 1.09001 * 110.24612 * 315.98431 * 5 4 3 31 31 H 1.08997 * 110.25115 * 77.90112 * 5 4 3 32 32 H 1.09002 * 111.07763 * 216.48760 * 6 5 4 33 33 H 1.08992 * 111.01783 * 92.61219 * 6 5 4 34 34 H 1.08999 * 109.47208 * 44.09998 * 10 9 7 35 35 H 1.08998 * 109.47746 * 284.09688 * 10 9 7 36 36 H 0.96999 * 119.99876 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47305 * 47.81709 * 19 9 7 38 38 H 1.09003 * 109.46883 * 167.81531 * 19 9 7 39 39 H 1.09005 * 109.46783 * 299.34240 * 20 19 9 40 40 H 1.08997 * 109.46946 * 59.33938 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.6601 1.8433 2.4659 6 6 4.0186 2.0776 3.1707 7 6 4.9328 1.0788 2.4238 8 1 5.9313 1.4972 2.2967 9 7 4.9999 -0.1975 3.1481 10 6 3.6576 -0.6603 3.5247 11 6 3.7166 -2.1177 3.9036 12 1 4.6571 -2.6473 3.8678 13 6 2.5708 -2.7737 4.3009 14 7 1.4253 -2.1289 4.3440 15 14 2.6454 -4.5782 4.7779 16 1 3.5727 -4.7490 5.9252 17 1 1.2892 -5.0448 5.1631 18 1 3.1334 -5.3754 3.6240 19 6 5.8692 -0.0885 4.3272 20 6 7.3293 -0.0026 3.8782 21 6 8.1992 0.1224 5.0591 22 7 8.8706 0.2188 5.9704 23 6 4.2626 0.8907 1.0807 24 8 4.7930 0.4122 0.1006 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8501 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 2.1116 2.7817 2.3839 31 1 2.0704 1.1090 3.0147 32 1 3.9575 1.8325 4.2311 33 1 4.3616 3.1022 3.0278 34 1 2.9789 -0.5313 2.6815 35 1 3.2974 -0.0786 4.3732 36 1 0.6193 -2.5904 4.6238 37 1 5.6085 0.8083 4.8892 38 1 5.7347 -0.9658 4.9601 39 1 7.5934 -0.9048 3.3263 40 1 7.4613 0.8680 3.2358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281905861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:20 Heat of formation + Delta-G solvation = 29.279601 kcal Electronic energy + Delta-G solvation = -22191.134593 eV Core-core repulsion = 19007.078662 eV Total energy + Delta-G solvation = -3184.055932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48888 -37.33715 -36.28813 -35.77780 -33.94530 -32.77911 -31.20616 -29.84642 -27.64283 -26.23247 -25.28747 -23.38803 -22.16734 -20.44995 -19.67047 -18.62900 -17.38114 -17.02385 -16.43978 -15.61691 -15.41829 -15.03105 -14.64391 -14.45674 -14.03646 -13.84039 -13.39358 -13.11862 -12.96832 -12.79272 -12.37582 -12.31611 -12.30017 -12.00137 -11.91522 -11.82628 -11.28993 -11.15594 -11.05033 -10.94913 -10.74560 -10.47304 -10.35852 -9.92713 -9.50628 -9.28139 -9.09659 -8.48845 -8.36631 -7.50120 -6.10684 -4.11309 2.42146 2.91028 2.97726 3.03678 3.30113 3.34271 3.38121 3.52108 4.14561 4.38258 4.67567 4.75439 4.98258 5.11449 5.22187 5.25273 5.25852 5.31488 5.39441 5.47355 5.63762 5.70591 5.76852 5.82502 5.87230 6.07231 6.18340 6.20687 6.29276 6.43808 6.73642 6.92030 7.02572 7.06208 7.12085 7.47345 7.66674 7.75133 7.86361 7.99177 8.36450 8.64111 8.94427 9.52955 10.99379 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.008415 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.616416 B = 3326.567166 C = 5381.377473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.158 3.842 4 N -0.613 5.613 5 C 0.100 3.900 6 C -0.167 4.167 7 C 0.050 3.950 8 H 0.104 0.896 9 N -0.511 5.511 10 C 0.187 3.813 11 C -0.511 4.511 12 H 0.064 0.936 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.066 3.934 20 C -0.029 4.029 21 C 0.219 3.781 22 N -0.455 5.455 23 C 0.539 3.461 24 O -0.528 6.528 25 H 0.098 0.902 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.000 1.000 36 H 0.262 0.738 37 H 0.036 0.964 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 9.885 -5.215 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.180 4.180 3 C 0.036 3.964 4 N -0.347 5.347 5 C -0.022 4.022 6 C -0.206 4.206 7 C -0.063 4.063 8 H 0.122 0.878 9 N -0.236 5.236 10 C 0.062 3.938 11 C -0.549 4.549 12 H 0.082 0.918 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.063 4.063 20 C -0.070 4.070 21 C -0.099 4.099 22 N -0.133 5.133 23 C 0.325 3.675 24 O -0.403 6.403 25 H 0.116 0.884 26 H 0.110 0.890 27 H 0.132 0.868 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.017 0.983 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.117 0.883 39 H 0.136 0.864 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.601 9.397 -4.720 10.636 hybrid contribution -0.922 -0.535 0.560 1.204 sum 0.679 8.862 -4.159 9.813 Atomic orbital electron populations 1.23736 0.95677 1.01562 1.01032 1.23346 0.96196 0.99292 0.99214 1.20384 0.91516 0.95364 0.89146 1.48179 1.12112 1.62877 1.11546 1.22284 0.97626 0.99421 0.82895 1.23282 0.95728 1.00045 1.01593 1.22521 0.99118 0.91647 0.92997 0.87822 1.62145 1.16155 1.22060 1.23256 1.20037 0.82373 0.95575 0.95784 1.21091 0.94793 0.94807 1.44249 0.91807 1.24916 0.95357 0.98242 0.95682 1.69917 0.98970 1.36576 1.47944 0.86611 0.76972 0.85159 0.79014 1.20259 1.21418 1.20154 1.21926 0.89026 1.02507 0.92891 1.19432 0.92366 1.05789 0.89377 1.29341 0.93505 0.92483 0.94539 1.81171 1.10963 1.09817 1.11332 1.20590 0.81524 0.75864 0.89494 1.90649 1.68605 1.43876 1.37132 0.88398 0.88972 0.86818 0.90474 0.89603 0.91417 0.89101 0.88901 0.90446 0.93714 0.98259 0.92889 0.94591 0.88333 0.86403 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 14.32 29.01 0.42 -2.09 16 2 C -0.16 -2.53 9.85 -36.03 -0.35 -2.88 16 3 C 0.16 2.20 6.37 -5.20 -0.03 2.17 16 4 N -0.61 -9.70 2.49 -173.57 -0.43 -10.13 16 5 C 0.10 1.43 6.34 -2.93 -0.02 1.42 16 6 C -0.17 -2.18 5.99 -24.91 -0.15 -2.33 16 7 C 0.05 0.77 2.99 -67.72 -0.20 0.57 16 8 H 0.10 1.35 6.41 -51.93 -0.33 1.01 16 9 N -0.51 -9.33 4.37 -228.10 -1.00 -10.32 16 10 C 0.19 4.18 2.85 -4.98 -0.01 4.17 16 11 C -0.51 -13.16 8.38 -34.44 -0.29 -13.45 16 12 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.89 -24.50 13.29 55.43 0.74 -23.77 16 15 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.07 1.02 4.62 -3.82 -0.02 1.00 16 20 C -0.03 -0.35 5.78 -29.52 -0.17 -0.52 16 21 C 0.22 3.04 15.43 -20.76 -0.32 2.72 16 22 N -0.46 -7.46 18.54 42.15 0.78 -6.68 16 23 C 0.54 9.71 6.78 -10.86 -0.07 9.63 16 24 O -0.53 -11.18 17.60 5.55 0.10 -11.08 16 25 H 0.10 1.34 8.06 -52.48 -0.42 0.92 16 26 H 0.09 1.05 7.84 -52.49 -0.41 0.64 16 27 H 0.11 2.11 8.06 -52.48 -0.42 1.69 16 28 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 29 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.60 6.28 -51.93 -0.33 1.27 16 32 H 0.09 1.27 5.96 -51.93 -0.31 0.96 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 1.09 5.24 -51.93 -0.27 0.82 16 35 H 0.00 -0.01 6.64 -51.93 -0.34 -0.35 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.04 0.51 6.84 -51.93 -0.36 0.16 16 38 H 0.10 1.74 7.06 -51.93 -0.37 1.38 16 39 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.10 1.01 6.58 -51.93 -0.34 0.67 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -31.02 333.37 -6.66 -37.69 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.53 Total: 1.55 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.32 Total: 1.89 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.09 Total: -50.90 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.10 Total: -11.08 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.02 -6.66 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281905861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.965 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds