Wall clock time and date at job start Mon Mar 30 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50693 * 119.99790 * 2 1 4 4 N 1.46498 * 109.47312 * 125.00362 * 3 2 1 5 5 C 1.46760 * 124.34621 * 270.00135 * 4 3 2 6 6 C 1.54835 * 105.49343 * 197.01403 * 5 4 3 7 7 C 1.54632 * 101.60049 * 334.56221 * 6 5 4 8 8 H 1.09006 * 110.48394 * 143.57325 * 7 6 5 9 9 N 1.46905 * 110.48836 * 266.08212 * 7 6 5 10 10 C 1.46894 * 110.99762 * 47.92755 * 9 7 6 11 11 C 1.50700 * 109.46980 * 164.09992 * 10 9 7 12 12 H 1.07995 * 120.00173 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00238 * 179.72780 * 11 10 9 14 14 N 1.31521 * 119.99805 * 0.27331 * 13 11 10 15 15 Si 1.86800 * 120.00204 * 180.27317 * 13 11 10 16 16 H 1.48500 * 109.46919 * 59.99808 * 15 13 11 17 17 H 1.48503 * 109.46828 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46926 * 299.99849 * 15 13 11 19 19 C 1.46898 * 110.99737 * 283.97622 * 9 7 6 20 20 C 1.53002 * 109.47436 * 287.81637 * 19 9 7 21 21 C 1.47200 * 109.47141 * 179.34517 * 20 19 9 22 22 N 9.63611 * 141.68405 * 87.90094 * 2 1 3 23 23 C 1.34422 * 124.35394 * 89.96771 * 4 3 2 24 24 O 1.21287 * 124.93931 * 359.65600 * 23 4 3 25 25 H 1.08006 * 120.00058 * 180.02562 * 1 2 3 26 26 H 1.07992 * 119.99675 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99765 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47656 * 4.99485 * 3 2 1 29 29 H 1.09003 * 109.46957 * 244.99940 * 3 2 1 30 30 H 1.09001 * 110.24612 * 315.98431 * 5 4 3 31 31 H 1.08997 * 110.25115 * 77.90112 * 5 4 3 32 32 H 1.09002 * 111.07763 * 216.48760 * 6 5 4 33 33 H 1.08992 * 111.01783 * 92.61219 * 6 5 4 34 34 H 1.08999 * 109.47208 * 44.09998 * 10 9 7 35 35 H 1.08998 * 109.47746 * 284.09688 * 10 9 7 36 36 H 0.96999 * 119.99876 * 180.02562 * 14 13 11 37 37 H 1.09000 * 109.47305 * 47.81709 * 19 9 7 38 38 H 1.09003 * 109.46883 * 167.81531 * 19 9 7 39 39 H 1.09005 * 109.46783 * 299.34240 * 20 19 9 40 40 H 1.08997 * 109.46946 * 59.33938 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.6601 1.8433 2.4659 6 6 4.0186 2.0776 3.1707 7 6 4.9328 1.0788 2.4238 8 1 5.9313 1.4972 2.2967 9 7 4.9999 -0.1975 3.1481 10 6 3.6576 -0.6603 3.5247 11 6 3.7166 -2.1177 3.9036 12 1 4.6571 -2.6473 3.8678 13 6 2.5708 -2.7737 4.3009 14 7 1.4253 -2.1289 4.3440 15 14 2.6454 -4.5782 4.7779 16 1 3.5727 -4.7490 5.9252 17 1 1.2892 -5.0448 5.1631 18 1 3.1334 -5.3754 3.6240 19 6 5.8692 -0.0885 4.3272 20 6 7.3293 -0.0026 3.8782 21 6 8.1992 0.1224 5.0591 22 7 8.8706 0.2188 5.9704 23 6 4.2626 0.8907 1.0807 24 8 4.7930 0.4122 0.1006 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8501 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 2.1116 2.7817 2.3839 31 1 2.0704 1.1090 3.0147 32 1 3.9575 1.8325 4.2311 33 1 4.3616 3.1022 3.0278 34 1 2.9789 -0.5313 2.6815 35 1 3.2974 -0.0786 4.3732 36 1 0.6193 -2.5904 4.6238 37 1 5.6085 0.8083 4.8892 38 1 5.7347 -0.9658 4.9601 39 1 7.5934 -0.9048 3.3263 40 1 7.4613 0.8680 3.2358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281905861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:19 Heat of formation + Delta-G solvation = 9.056925 kcal Electronic energy + Delta-G solvation = -22192.011514 eV Core-core repulsion = 19007.078662 eV Total energy + Delta-G solvation = -3184.932853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77683 -38.66924 -37.57384 -37.06534 -35.22361 -34.64339 -32.41191 -31.22426 -29.13449 -27.58264 -26.61889 -24.88902 -23.56934 -21.70648 -20.95601 -19.92654 -18.82324 -18.41799 -17.71134 -17.19766 -16.76671 -16.42932 -16.18824 -15.71060 -15.30616 -15.08900 -14.75743 -14.37059 -14.26850 -14.06564 -13.99288 -13.81702 -13.52115 -13.36369 -13.17336 -12.99487 -12.83698 -12.76233 -12.35822 -12.29858 -12.20254 -11.91929 -11.85281 -11.46900 -11.22258 -10.74952 -10.50595 -10.33355 -9.63792 -8.94170 -8.13717 -6.19312 1.22990 1.41733 1.43085 1.49460 1.64055 1.81437 1.86960 2.34616 2.43110 2.98470 3.20017 3.49630 3.55447 3.77432 4.00581 4.12080 4.13453 4.17809 4.31658 4.34381 4.51445 4.62326 4.71606 4.76618 4.78303 4.98354 5.01386 5.04759 5.11714 5.20425 5.37308 5.41239 5.55246 5.71158 5.73124 5.89308 6.11104 6.24611 6.33163 6.60104 6.67211 6.94209 7.30684 7.47963 8.94770 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.010373 B = 0.008415 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.616416 B = 3326.567166 C = 5381.377473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.190 4.190 3 C 0.157 3.843 4 N -0.611 5.611 5 C 0.099 3.901 6 C -0.155 4.155 7 C 0.047 3.953 8 H 0.137 0.863 9 N -0.526 5.526 10 C 0.209 3.791 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.013 3.987 14 N -0.920 5.920 15 Si 0.947 3.053 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.278 1.278 19 C 0.069 3.931 20 C -0.015 4.015 21 C 0.245 3.755 22 N -0.498 5.498 23 C 0.524 3.476 24 O -0.571 6.571 25 H 0.093 0.907 26 H 0.127 0.873 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.022 0.978 35 H -0.014 1.014 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 11.818 -5.270 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.036 3.964 4 N -0.343 5.343 5 C -0.024 4.024 6 C -0.194 4.194 7 C -0.065 4.065 8 H 0.155 0.845 9 N -0.251 5.251 10 C 0.083 3.917 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.186 4.186 14 N -0.561 5.561 15 Si 0.774 3.226 16 H -0.195 1.195 17 H -0.211 1.211 18 H -0.204 1.204 19 C -0.061 4.061 20 C -0.055 4.055 21 C -0.072 4.072 22 N -0.177 5.177 23 C 0.312 3.688 24 O -0.449 6.449 25 H 0.111 0.889 26 H 0.145 0.855 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.040 0.960 35 H 0.004 0.996 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.142 0.858 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.743 11.344 -4.756 12.423 hybrid contribution -1.041 -1.155 0.534 1.644 sum 0.701 10.189 -4.222 11.051 Atomic orbital electron populations 1.23960 0.94941 1.02974 0.98097 1.23229 0.96990 0.98606 1.02079 1.20548 0.91764 0.95469 0.88639 1.48361 1.11731 1.61766 1.12468 1.22344 0.98436 0.99826 0.81758 1.23278 0.94103 1.01510 1.00498 1.22653 1.01367 0.90946 0.91485 0.84540 1.61916 1.14134 1.24633 1.24424 1.19567 0.84330 0.93716 0.94087 1.21496 0.94410 0.96794 1.43551 0.92456 1.25598 0.95312 1.01635 0.96046 1.70015 0.99307 1.37740 1.48989 0.85777 0.77009 0.81184 0.78678 1.19544 1.21147 1.20352 1.21852 0.90458 1.01958 0.91792 1.19396 0.89555 1.07691 0.88871 1.29481 0.92688 0.91054 0.94003 1.81205 1.12423 1.11503 1.12529 1.21134 0.82402 0.75365 0.89897 1.90615 1.69748 1.45814 1.38743 0.88903 0.85524 0.91256 0.86614 0.89786 0.87511 0.92997 0.89545 0.86232 0.95965 0.99587 0.93066 0.92977 0.91238 0.85811 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 14.32 67.77 0.97 -3.34 16 2 C -0.19 -6.06 9.85 25.64 0.25 -5.81 16 3 C 0.16 4.21 6.37 85.63 0.55 4.76 16 4 N -0.61 -18.69 2.49 -821.63 -2.04 -20.73 16 5 C 0.10 2.63 6.34 86.96 0.55 3.18 16 6 C -0.15 -3.57 5.99 31.78 0.19 -3.38 16 7 C 0.05 1.36 2.99 44.91 0.13 1.50 16 8 H 0.14 3.00 6.41 -2.38 -0.02 2.98 16 9 N -0.53 -18.82 4.37 -875.57 -3.83 -22.65 16 10 C 0.21 9.52 2.85 85.56 0.24 9.76 16 11 C -0.52 -27.59 8.38 25.60 0.21 -27.38 16 12 H 0.06 3.02 7.65 -2.91 -0.02 2.99 16 13 C 0.01 0.70 5.46 84.65 0.46 1.17 16 14 N -0.92 -51.48 13.29 21.45 0.28 -51.20 16 15 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 C 0.07 2.02 4.62 86.30 0.40 2.42 16 20 C -0.02 -0.32 5.78 28.79 0.17 -0.16 16 21 C 0.24 6.31 15.43 89.44 1.38 7.69 16 22 N -0.50 -15.71 18.54 20.01 0.37 -15.33 16 23 C 0.52 18.54 6.78 87.89 0.60 19.14 16 24 O -0.57 -24.39 17.60 -3.05 -0.05 -24.45 16 25 H 0.09 2.53 8.06 -2.91 -0.02 2.51 16 26 H 0.13 2.50 7.84 -2.91 -0.02 2.47 16 27 H 0.07 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.12 2.19 7.79 -2.39 -0.02 2.17 16 29 H 0.08 2.27 7.93 -2.39 -0.02 2.25 16 30 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.82 6.28 -2.39 -0.01 1.81 16 32 H 0.09 2.16 5.96 -2.39 -0.01 2.15 16 33 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.02 1.12 5.24 -2.39 -0.01 1.11 16 35 H -0.01 -0.64 6.64 -2.39 -0.02 -0.66 16 36 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.05 1.37 6.84 -2.39 -0.02 1.35 16 38 H 0.07 2.46 7.06 -2.39 -0.02 2.44 16 39 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 40 H 0.14 2.10 6.58 -2.39 -0.02 2.08 16 Total: -1.00 -70.69 333.37 3.91 -66.78 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.04 Total: 12.66 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 6.11 Total: 9.53 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -5.21 Total: -109.91 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -70.69 3.91 -66.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281905861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.838 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds