Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47008 * 2 1 4 4 H 1.08997 * 109.46994 * 55.10108 * 3 2 1 5 5 C 1.50703 * 109.46904 * 175.10266 * 3 2 1 6 6 H 1.08002 * 119.99695 * 119.73008 * 5 3 2 7 7 C 1.37876 * 120.00394 * 299.99609 * 5 3 2 8 8 N 1.31518 * 119.99424 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00376 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47108 * 119.99958 * 9 7 5 12 12 H 1.48493 * 109.47556 * 240.00100 * 9 7 5 13 13 N 1.46500 * 109.47132 * 295.10208 * 3 2 1 14 14 C 1.34775 * 120.00271 * 125.51300 * 13 3 2 15 15 O 1.21590 * 119.99506 * 3.77892 * 14 13 3 16 16 N 1.34770 * 120.00435 * 183.78301 * 14 13 3 17 17 C 1.39971 * 120.00305 * 176.46724 * 16 14 13 18 18 C 1.39274 * 120.48177 * 312.20103 * 17 16 14 19 19 C 1.50702 * 120.82310 * 0.02562 * 18 17 16 20 20 C 1.38506 * 118.35853 * 179.80655 * 18 17 16 21 21 C 1.38276 * 119.23596 * 0.47496 * 20 18 17 22 22 N 1.31852 * 120.91572 * 359.76655 * 21 20 18 23 23 C 1.31821 * 121.79706 * 359.97438 * 22 21 20 24 24 C 1.50691 * 119.66836 * 179.97438 * 23 22 21 25 25 H 1.09007 * 109.47207 * 189.40764 * 1 2 3 26 26 H 1.08995 * 109.47395 * 309.40763 * 1 2 3 27 27 H 1.08996 * 109.47202 * 69.41072 * 1 2 3 28 28 H 1.08996 * 109.47421 * 240.00043 * 2 1 3 29 29 H 1.08998 * 109.47554 * 119.99801 * 2 1 3 30 30 H 0.97009 * 119.99465 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99708 * 305.51205 * 13 3 2 32 32 H 0.97005 * 119.99886 * 356.45856 * 16 14 13 33 33 H 1.09002 * 109.46904 * 133.02972 * 19 18 17 34 34 H 1.09000 * 109.47131 * 253.03112 * 19 18 17 35 35 H 1.09000 * 109.46814 * 13.03187 * 19 18 17 36 36 H 1.08003 * 120.38762 * 180.22194 * 20 18 17 37 37 H 1.08000 * 119.54139 * 179.74985 * 21 20 18 38 38 H 1.09004 * 109.47769 * 274.62711 * 24 23 22 39 39 H 1.08996 * 109.47325 * 34.62909 * 24 23 22 40 40 H 1.09004 * 109.47476 * 154.63000 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9810 0.8428 5 6 3.5420 1.4442 0.1213 6 1 4.1462 1.8854 -0.6577 7 6 4.1453 0.8778 1.2241 8 7 3.4098 0.3354 2.1699 9 14 6.0072 0.8805 1.3748 10 1 6.5989 1.5473 0.1870 11 1 6.4033 1.6153 2.6029 12 1 6.4995 -0.5182 1.4543 13 7 1.6502 2.0982 -1.2508 14 6 0.9633 3.2573 -1.2184 15 8 0.7267 3.7942 -0.1535 16 7 0.5386 3.8213 -2.3664 17 6 -0.2379 4.9852 -2.3291 18 6 -1.3335 5.0765 -1.4740 19 6 -1.7067 3.9284 -0.5719 20 6 -2.0689 6.2502 -1.4698 21 6 -1.7005 7.2809 -2.3148 22 7 -0.6605 7.1610 -3.1163 23 6 0.0691 6.0635 -3.1480 24 6 1.2476 5.9780 -4.0832 25 1 -0.3634 -1.0139 0.1680 26 1 -0.3634 0.6524 0.7940 27 1 -0.3633 0.3614 -0.9620 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8343 -0.0635 2.9456 31 1 1.8866 1.6981 -2.1022 32 1 0.7712 3.4206 -3.2187 33 1 -1.8920 4.3028 0.4349 34 1 -2.6073 3.4459 -0.9517 35 1 -0.8907 3.2062 -0.5466 36 1 -2.9226 6.3577 -0.8171 37 1 -2.2729 8.1968 -2.3186 38 1 0.9084 5.6513 -5.0663 39 1 1.7161 6.9585 -4.1679 40 1 1.9707 5.2623 -3.6922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287553245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = 10.006505 kcal Electronic energy + Delta-G solvation = -21999.587517 eV Core-core repulsion = 18814.695841 eV Total energy + Delta-G solvation = -3184.891676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89907 -39.09581 -35.77446 -34.53640 -33.80538 -32.48710 -31.40899 -30.38750 -27.79876 -27.37259 -26.51541 -23.43857 -22.58761 -21.28917 -20.43135 -19.85759 -18.34762 -17.28722 -16.67643 -16.17634 -15.59179 -15.02641 -14.74164 -14.52524 -14.16317 -13.65965 -13.45702 -13.09432 -12.95281 -12.71587 -12.67078 -12.17612 -12.10584 -11.99788 -11.59694 -11.42747 -11.31262 -11.02571 -10.83720 -10.29843 -10.18343 -9.94541 -9.86273 -9.60112 -9.30438 -9.25000 -9.07167 -8.44364 -8.20277 -7.79487 -6.10302 -4.18103 1.18025 1.40965 3.13503 3.24845 3.33492 3.36799 3.66285 3.94921 4.35347 4.40768 4.75260 4.88681 4.94820 5.20304 5.20679 5.44351 5.55667 5.58933 5.59499 5.79688 5.91667 6.05156 6.13321 6.15373 6.16291 6.36606 6.39472 6.53107 6.70155 6.79141 6.90374 7.02227 7.09662 7.21660 7.36737 7.65329 7.76432 8.00713 8.08245 8.19281 8.67915 8.82958 9.19284 9.49347 10.94321 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.004813 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.079788 B = 5816.603527 C = 6408.864060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.278 3.722 4 H 0.065 0.935 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.717 5.717 14 C 0.695 3.305 15 O -0.570 6.570 16 N -0.695 5.695 17 C 0.126 3.874 18 C -0.029 4.029 19 C -0.133 4.133 20 C -0.168 4.168 21 C 0.083 3.917 22 N -0.479 5.479 23 C 0.106 3.894 24 C -0.102 4.102 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.106 0.894 30 H 0.263 0.737 31 H 0.384 0.616 32 H 0.402 0.598 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.919 5.679 -10.620 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.176 3.824 4 H 0.082 0.918 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.726 3.274 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.368 5.368 14 C 0.396 3.604 15 O -0.448 6.448 16 N -0.346 5.346 17 C 0.028 3.972 18 C -0.039 4.039 19 C -0.189 4.189 20 C -0.189 4.189 21 C -0.075 4.075 22 N -0.189 5.189 23 C -0.034 4.034 24 C -0.160 4.160 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.124 0.876 30 H 0.073 0.927 31 H 0.215 0.785 32 H 0.238 0.762 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.171 0.829 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.840 6.645 -9.931 14.864 hybrid contribution 0.931 -1.019 -0.044 1.381 sum -7.909 5.627 -9.975 13.918 Atomic orbital electron populations 1.21782 0.98939 0.99490 0.99845 1.21948 0.92110 0.99807 1.02984 1.18878 0.94290 0.88638 0.80619 0.91762 1.21448 0.91267 1.38042 1.05915 0.92283 1.24880 0.98455 0.94983 0.95432 1.69871 1.34953 1.38214 1.09485 0.86442 0.85200 0.77621 0.78129 1.19866 1.20925 1.20950 1.45700 1.57159 1.22198 1.11749 1.15969 0.79312 0.81845 0.83299 1.90930 1.61738 1.63635 1.28473 1.42699 1.55884 1.27008 1.08966 1.18100 0.91854 0.87762 0.99487 1.20379 0.91357 0.96477 0.95657 1.21375 1.02822 0.97122 0.97557 1.21920 1.01707 0.93869 1.01396 1.22553 0.94058 0.98482 0.92361 1.67434 1.06102 1.23741 1.21600 1.21204 0.96514 0.87757 0.97951 1.20643 0.94231 1.03788 0.97290 0.94651 0.93500 0.94893 0.94585 0.87633 0.92712 0.78462 0.76213 0.91105 0.92393 0.87675 0.84918 0.82946 0.90682 0.90369 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.71 37.15 0.36 -2.34 16 2 C -0.13 -2.84 5.45 -26.73 -0.15 -2.98 16 3 C 0.28 6.60 2.29 -69.08 -0.16 6.45 16 4 H 0.06 1.80 6.92 -51.93 -0.36 1.44 16 5 C -0.53 -13.85 8.84 -34.44 -0.30 -14.15 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.39 11.29 55.43 0.63 -23.77 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.72 -13.83 4.52 -59.81 -0.27 -14.10 16 14 C 0.69 13.40 6.70 -86.93 -0.58 12.81 16 15 O -0.57 -13.33 12.42 5.29 0.07 -13.26 16 16 N -0.69 -10.43 4.28 -14.13 -0.06 -10.49 16 17 C 0.13 1.96 5.96 -83.53 -0.50 1.47 16 18 C -0.03 -0.45 5.51 -104.14 -0.57 -1.02 16 19 C -0.13 -2.13 8.84 36.01 0.32 -1.81 16 20 C -0.17 -2.23 9.84 -39.47 -0.39 -2.62 16 21 C 0.08 1.06 11.18 -17.53 -0.20 0.87 16 22 N -0.48 -6.99 10.27 -9.32 -0.10 -7.09 16 23 C 0.11 1.54 6.80 -82.38 -0.56 0.98 16 24 C -0.10 -1.16 9.86 36.00 0.36 -0.81 16 25 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 27 H 0.03 0.56 8.01 -51.93 -0.42 0.15 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.11 2.63 5.95 -51.93 -0.31 2.32 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.38 6.18 8.85 -40.82 -0.36 5.81 16 32 H 0.40 4.62 8.41 -40.82 -0.34 4.27 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 1.98 3.74 -52.38 -0.20 1.78 16 36 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.85 7.17 -51.93 -0.37 0.48 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -30.96 328.14 -7.98 -38.94 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.70 Total: 10.58 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.47 Total: -1.53 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.20 Total: -55.44 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.07 Total: -13.26 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.96 -7.98 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287553245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.945 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds