Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47008 * 2 1 4 4 H 1.08997 * 109.46994 * 55.10108 * 3 2 1 5 5 C 1.50703 * 109.46904 * 175.10266 * 3 2 1 6 6 H 1.08002 * 119.99695 * 119.73008 * 5 3 2 7 7 C 1.37876 * 120.00394 * 299.99609 * 5 3 2 8 8 N 1.31518 * 119.99424 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00376 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47108 * 119.99958 * 9 7 5 12 12 H 1.48493 * 109.47556 * 240.00100 * 9 7 5 13 13 N 1.46500 * 109.47132 * 295.10208 * 3 2 1 14 14 C 1.34775 * 120.00271 * 125.51300 * 13 3 2 15 15 O 1.21590 * 119.99506 * 3.77892 * 14 13 3 16 16 N 1.34770 * 120.00435 * 183.78301 * 14 13 3 17 17 C 1.39971 * 120.00305 * 176.46724 * 16 14 13 18 18 C 1.39274 * 120.48177 * 312.20103 * 17 16 14 19 19 C 1.50702 * 120.82310 * 0.02562 * 18 17 16 20 20 C 1.38506 * 118.35853 * 179.80655 * 18 17 16 21 21 C 1.38276 * 119.23596 * 0.47496 * 20 18 17 22 22 N 1.31852 * 120.91572 * 359.76655 * 21 20 18 23 23 C 1.31821 * 121.79706 * 359.97438 * 22 21 20 24 24 C 1.50691 * 119.66836 * 179.97438 * 23 22 21 25 25 H 1.09007 * 109.47207 * 189.40764 * 1 2 3 26 26 H 1.08995 * 109.47395 * 309.40763 * 1 2 3 27 27 H 1.08996 * 109.47202 * 69.41072 * 1 2 3 28 28 H 1.08996 * 109.47421 * 240.00043 * 2 1 3 29 29 H 1.08998 * 109.47554 * 119.99801 * 2 1 3 30 30 H 0.97009 * 119.99465 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99708 * 305.51205 * 13 3 2 32 32 H 0.97005 * 119.99886 * 356.45856 * 16 14 13 33 33 H 1.09002 * 109.46904 * 133.02972 * 19 18 17 34 34 H 1.09000 * 109.47131 * 253.03112 * 19 18 17 35 35 H 1.09000 * 109.46814 * 13.03187 * 19 18 17 36 36 H 1.08003 * 120.38762 * 180.22194 * 20 18 17 37 37 H 1.08000 * 119.54139 * 179.74985 * 21 20 18 38 38 H 1.09004 * 109.47769 * 274.62711 * 24 23 22 39 39 H 1.08996 * 109.47325 * 34.62909 * 24 23 22 40 40 H 1.09004 * 109.47476 * 154.63000 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9810 0.8428 5 6 3.5420 1.4442 0.1213 6 1 4.1462 1.8854 -0.6577 7 6 4.1453 0.8778 1.2241 8 7 3.4098 0.3354 2.1699 9 14 6.0072 0.8805 1.3748 10 1 6.5989 1.5473 0.1870 11 1 6.4033 1.6153 2.6029 12 1 6.4995 -0.5182 1.4543 13 7 1.6502 2.0982 -1.2508 14 6 0.9633 3.2573 -1.2184 15 8 0.7267 3.7942 -0.1535 16 7 0.5386 3.8213 -2.3664 17 6 -0.2379 4.9852 -2.3291 18 6 -1.3335 5.0765 -1.4740 19 6 -1.7067 3.9284 -0.5719 20 6 -2.0689 6.2502 -1.4698 21 6 -1.7005 7.2809 -2.3148 22 7 -0.6605 7.1610 -3.1163 23 6 0.0691 6.0635 -3.1480 24 6 1.2476 5.9780 -4.0832 25 1 -0.3634 -1.0139 0.1680 26 1 -0.3634 0.6524 0.7940 27 1 -0.3633 0.3614 -0.9620 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8343 -0.0635 2.9456 31 1 1.8866 1.6981 -2.1022 32 1 0.7712 3.4206 -3.2187 33 1 -1.8920 4.3028 0.4349 34 1 -2.6073 3.4459 -0.9517 35 1 -0.8907 3.2062 -0.5466 36 1 -2.9226 6.3577 -0.8171 37 1 -2.2729 8.1968 -2.3186 38 1 0.9084 5.6513 -5.0663 39 1 1.7161 6.9585 -4.1679 40 1 1.9707 5.2623 -3.6922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287553245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = -10.368609 kcal Electronic energy + Delta-G solvation = -22000.471048 eV Core-core repulsion = 18814.695841 eV Total energy + Delta-G solvation = -3185.775207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15121 -40.45022 -37.42047 -35.96198 -34.96893 -34.28687 -32.97686 -31.69452 -29.00963 -28.83696 -27.92578 -25.15346 -23.90513 -22.47756 -21.85486 -21.53541 -19.80141 -18.78741 -18.13962 -17.66819 -16.94021 -16.58242 -16.11331 -15.99499 -15.54109 -15.03747 -14.78454 -14.69211 -14.36556 -14.07536 -13.77414 -13.41060 -13.30795 -13.17061 -13.10908 -13.02321 -12.85824 -12.65314 -12.63574 -12.13459 -11.81874 -11.63347 -11.48585 -11.15229 -11.03928 -10.48570 -10.42327 -10.18217 -9.67771 -9.19041 -8.11890 -6.27332 0.10487 0.28511 1.41026 1.43701 1.53585 1.78568 2.21762 2.44010 2.81916 3.15691 3.39006 3.51871 3.69764 3.90314 4.14862 4.36619 4.48478 4.52047 4.58019 4.60137 4.69953 4.72819 4.75665 4.76201 5.03968 5.08118 5.16536 5.24047 5.26706 5.36036 5.39119 5.44384 5.57098 5.66564 5.72600 5.88716 6.06396 6.18416 6.26687 6.81243 7.01915 7.23383 7.39680 7.73373 8.91173 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.004813 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.079788 B = 5816.603527 C = 6408.864060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C 0.289 3.711 4 H 0.015 0.985 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.698 3.302 15 O -0.614 6.614 16 N -0.673 5.673 17 C 0.099 3.901 18 C -0.050 4.050 19 C -0.127 4.127 20 C -0.169 4.169 21 C 0.087 3.913 22 N -0.494 5.494 23 C 0.102 3.898 24 C -0.100 4.100 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.263 0.737 31 H 0.402 0.598 32 H 0.420 0.580 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.189 0.811 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 6.263 -12.526 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.185 3.815 4 H 0.033 0.967 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.785 3.215 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.363 5.363 14 C 0.399 3.601 15 O -0.495 6.495 16 N -0.325 5.325 17 C 0.002 3.998 18 C -0.060 4.060 19 C -0.183 4.183 20 C -0.190 4.190 21 C -0.070 4.070 22 N -0.205 5.205 23 C -0.038 4.038 24 C -0.157 4.157 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.236 0.764 32 H 0.259 0.741 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.176 0.824 37 H 0.206 0.794 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.184 7.230 -11.915 16.691 hybrid contribution 0.953 -1.102 0.538 1.553 sum -8.231 6.128 -11.377 15.321 Atomic orbital electron populations 1.21643 0.96629 1.00415 1.00165 1.21747 0.94118 0.98116 1.02090 1.18416 0.92891 0.89325 0.80880 0.96729 1.21778 0.92659 1.37843 1.05986 0.92501 1.25635 1.02524 0.94790 0.95231 1.70008 1.36508 1.38814 1.09877 0.85497 0.80346 0.77879 0.77794 1.19270 1.21408 1.19967 1.45279 1.57443 1.22384 1.11210 1.15992 0.78912 0.81493 0.83711 1.90903 1.63247 1.64739 1.30624 1.42295 1.55130 1.26727 1.08373 1.18307 0.92427 0.88312 1.00801 1.20589 0.92276 0.97289 0.95871 1.21224 1.02607 0.96950 0.97530 1.22214 1.02103 0.92965 1.01668 1.23174 0.93401 0.99458 0.91000 1.67544 1.06855 1.23676 1.22397 1.21601 0.97104 0.87246 0.97848 1.20712 0.93137 1.04008 0.97878 0.92544 0.95519 0.92987 0.93128 0.90730 0.92731 0.76380 0.74128 0.92017 0.90311 0.90451 0.82367 0.79430 0.88169 0.90123 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.71 71.98 0.70 -4.21 16 2 C -0.12 -5.38 5.45 30.59 0.17 -5.21 16 3 C 0.29 14.07 2.29 44.25 0.10 14.17 16 4 H 0.01 0.87 6.92 -2.39 -0.02 0.85 16 5 C -0.54 -28.93 8.84 25.60 0.23 -28.71 16 6 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.91 -51.45 11.29 21.45 0.24 -51.21 16 9 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 N -0.71 -27.48 4.52 -461.41 -2.09 -29.57 16 14 C 0.70 27.17 6.70 179.06 1.20 28.37 16 15 O -0.61 -29.75 12.42 -4.00 -0.05 -29.80 16 16 N -0.67 -19.73 4.28 -316.87 -1.36 -21.09 16 17 C 0.10 2.99 5.96 38.23 0.23 3.22 16 18 C -0.05 -1.54 5.51 -19.55 -0.11 -1.64 16 19 C -0.13 -4.08 8.84 71.24 0.63 -3.45 16 20 C -0.17 -4.16 9.84 22.34 0.22 -3.94 16 21 C 0.09 2.00 11.18 84.70 0.95 2.95 16 22 N -0.49 -13.40 10.27 -183.40 -1.88 -15.28 16 23 C 0.10 2.79 6.80 42.70 0.29 3.08 16 24 C -0.10 -2.08 9.86 71.23 0.70 -1.38 16 25 H 0.06 1.85 8.14 -2.38 -0.02 1.84 16 26 H 0.03 1.08 8.10 -2.39 -0.02 1.06 16 27 H 0.05 1.72 8.01 -2.39 -0.02 1.70 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 29 H 0.07 3.81 5.95 -2.39 -0.01 3.79 16 30 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 31 H 0.40 12.52 8.85 -92.71 -0.82 11.70 16 32 H 0.42 9.00 8.41 -92.70 -0.78 8.22 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 2.97 3.74 -9.45 -0.04 2.94 16 36 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 37 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.53 7.17 -2.39 -0.02 1.51 16 Total: -1.00 -68.82 328.14 2.09 -66.74 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.56 Total: 30.64 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.75 Total: 4.68 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -5.08 Total: -117.15 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.05 Total: -29.80 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -68.82 2.09 -66.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287553245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.371 kcal (2) G-P(sol) polarization free energy of solvation -68.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds