Wall clock time and date at job start Mon Mar 30 2020 02:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50694 * 119.99549 * 2 1 4 4 N 1.46898 * 109.47001 * 121.38551 * 3 2 1 5 5 C 1.46904 * 111.00389 * 194.92639 * 4 3 2 6 6 C 1.50698 * 109.47167 * 63.78403 * 5 4 3 7 7 H 1.08000 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99988 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00251 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00029 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47314 * 89.99540 * 10 8 6 12 12 H 1.48498 * 109.47125 * 209.99423 * 10 8 6 13 13 H 1.48495 * 109.46973 * 329.99279 * 10 8 6 14 14 C 1.46898 * 111.00295 * 70.96604 * 4 3 2 15 15 H 1.09000 * 109.47701 * 272.78316 * 14 4 3 16 16 C 1.53002 * 109.47219 * 152.77650 * 14 4 3 17 17 C 1.53006 * 109.46691 * 63.34903 * 16 14 4 18 18 C 1.50701 * 109.47082 * 32.78157 * 14 4 3 19 19 C 1.38244 * 119.97388 * 230.78073 * 18 14 4 20 20 C 1.38199 * 120.02135 * 180.02562 * 19 18 14 21 21 C 1.38452 * 119.97911 * 0.23474 * 20 19 18 22 22 F 1.35104 * 120.02674 * 179.72725 * 21 20 19 23 23 C 1.38461 * 119.94569 * 359.48732 * 21 20 19 24 24 C 1.38193 * 119.97516 * 0.53682 * 23 21 20 25 25 H 1.07990 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.99644 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99891 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47765 * 1.38595 * 3 2 1 29 29 H 1.09001 * 109.47152 * 241.37873 * 3 2 1 30 30 H 1.08997 * 109.47104 * 183.79394 * 5 4 3 31 31 H 1.09005 * 109.46376 * 303.78836 * 5 4 3 32 32 H 0.96995 * 120.00741 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.47571 * 183.34413 * 16 14 4 34 34 H 1.08992 * 109.47321 * 303.35065 * 16 14 4 35 35 H 1.08992 * 109.46857 * 307.46429 * 17 16 14 36 36 H 1.08994 * 109.47330 * 67.46736 * 17 16 14 37 37 H 1.09007 * 109.46585 * 187.46779 * 17 16 14 38 38 H 1.07998 * 119.98757 * 0.02562 * 19 18 14 39 39 H 1.08010 * 120.01061 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.01189 * 180.25327 * 23 21 20 41 41 H 1.07999 * 119.99189 * 179.74400 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9329 1.3686 1.1823 5 6 3.4088 2.7391 1.4130 6 6 2.2356 3.6326 1.7235 7 1 1.2365 3.2232 1.7475 8 6 2.4379 4.9725 1.9780 9 7 1.4141 5.7524 2.2484 10 14 4.1661 5.6804 1.9372 11 1 4.4768 6.1491 0.5627 12 1 4.2555 6.8228 2.8817 13 1 5.1399 4.6321 2.3346 14 6 4.0595 0.4340 1.0582 15 1 3.7623 -0.5453 1.4333 16 6 5.2455 0.9539 1.8730 17 6 4.8678 0.9934 3.3552 18 6 4.4580 0.3173 -0.3905 19 6 4.5904 -0.9299 -0.9720 20 6 4.9563 -1.0381 -2.3003 21 6 5.1951 0.1029 -3.0473 22 9 5.5582 -0.0020 -4.3444 23 6 5.0565 1.3516 -2.4653 24 6 4.6910 1.4574 -1.1368 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3554 2.1334 0.0249 29 1 2.6714 1.3737 -0.9021 30 1 4.1032 2.7460 2.2531 31 1 3.9160 3.1028 0.5193 32 1 1.5563 6.6951 2.4271 33 1 6.1003 0.2920 1.7335 34 1 5.5049 1.9578 1.5373 35 1 3.9368 1.5466 3.4781 36 1 4.7374 -0.0239 3.7242 37 1 5.6602 1.4857 3.9190 38 1 4.4078 -1.8199 -0.3881 39 1 5.0601 -2.0126 -2.7543 40 1 5.2385 2.2424 -3.0481 41 1 4.5869 2.4312 -0.6815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292100130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:01 Heat of formation + Delta-G solvation = 22.238719 kcal Electronic energy + Delta-G solvation = -22305.299969 eV Core-core repulsion = 19101.018760 eV Total energy + Delta-G solvation = -3204.281209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.83916 -40.16986 -37.20319 -34.00247 -32.84429 -31.43158 -30.97452 -30.57553 -27.75838 -25.85593 -23.97844 -23.17017 -22.01555 -21.38797 -19.81346 -18.67205 -17.62486 -17.10494 -16.19180 -15.85233 -15.56789 -15.12011 -14.87642 -14.59150 -14.16200 -13.73454 -13.60553 -13.30258 -13.09240 -12.64393 -12.53021 -12.39270 -12.19094 -11.94731 -11.69324 -11.22163 -11.05142 -10.94089 -10.79879 -10.69872 -10.58410 -10.23370 -9.89127 -9.83952 -9.29234 -9.05021 -8.90102 -8.60145 -8.32453 -7.36752 -6.09258 -4.06092 1.20722 1.29475 2.77426 3.22467 3.30928 3.32156 3.63966 4.31413 4.36627 4.75372 4.75935 4.91857 4.96843 5.22170 5.26128 5.35959 5.44037 5.45915 5.52354 5.69470 5.77438 5.89907 6.04164 6.04773 6.12345 6.13815 6.21199 6.28149 6.31692 6.33502 6.46323 6.56412 6.71147 6.78808 6.89256 6.96011 6.98575 7.08909 7.32721 7.55919 7.86834 8.00019 8.61126 9.00305 9.52158 11.03820 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.006399 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.114835 B = 4374.553380 C = 4699.966157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 C 0.068 3.932 4 N -0.504 5.504 5 C 0.141 3.859 6 C -0.510 4.510 7 H 0.081 0.919 8 C 0.071 3.929 9 N -0.898 5.898 10 Si 0.867 3.133 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.118 3.882 15 H 0.083 0.917 16 C -0.122 4.122 17 C -0.154 4.154 18 C -0.101 4.101 19 C -0.088 4.088 20 C -0.156 4.156 21 C 0.086 3.914 22 F -0.146 7.146 23 C -0.154 4.154 24 C -0.088 4.088 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.053 0.947 31 H -0.015 1.015 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 -12.562 -5.961 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.149 4.149 3 C -0.059 4.059 4 N -0.226 5.226 5 C 0.015 3.985 6 C -0.548 4.548 7 H 0.099 0.901 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.695 3.305 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.009 3.991 15 H 0.101 0.899 16 C -0.160 4.160 17 C -0.211 4.211 18 C -0.103 4.103 19 C -0.107 4.107 20 C -0.175 4.175 21 C 0.067 3.933 22 F -0.125 7.125 23 C -0.172 4.172 24 C -0.106 4.106 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.002 0.998 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.091 -12.491 -5.520 15.387 hybrid contribution 1.386 0.705 -1.066 1.885 sum 8.477 -11.786 -6.585 15.941 Atomic orbital electron populations 1.23726 0.96013 1.01239 1.02649 1.22862 0.95765 0.98208 0.98032 1.21537 0.96686 0.95914 0.91804 1.62448 1.15226 1.08320 1.36586 1.20727 0.97484 0.84780 0.95462 1.21050 0.94374 0.92131 1.47235 0.90099 1.24875 0.96327 0.96973 0.94940 1.69883 1.29999 1.05636 1.48204 0.86985 0.85970 0.79348 0.78246 1.20362 1.21119 1.18925 1.20987 0.91429 0.98500 0.88211 0.89890 1.21797 0.96358 1.01548 0.96266 1.21891 1.03139 1.01556 0.94521 1.20825 0.98013 0.92876 0.98582 1.20884 0.98616 0.97425 0.93746 1.21043 1.03881 0.97462 0.95084 1.17702 1.02243 0.94699 0.78681 1.91469 1.89468 1.97062 1.34502 1.21142 1.03471 0.96249 0.96379 1.21434 0.95924 1.00145 0.93099 0.88478 0.89391 0.88668 0.88699 0.93585 0.92947 0.99754 0.92655 0.92440 0.91206 0.89533 0.93363 0.93561 0.85278 0.85223 0.85012 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.04 14.32 29.01 0.42 -2.63 16 2 C -0.13 -2.09 9.15 -36.03 -0.33 -2.42 16 3 C 0.07 1.25 4.69 -4.98 -0.02 1.23 16 4 N -0.50 -9.56 4.26 -230.91 -0.98 -10.54 16 5 C 0.14 3.09 1.89 -4.97 -0.01 3.08 16 6 C -0.51 -13.61 8.83 -34.44 -0.30 -13.92 16 7 H 0.08 2.39 7.33 -52.49 -0.38 2.01 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 10 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 14 C 0.12 1.82 2.13 -68.86 -0.15 1.68 16 15 H 0.08 1.20 7.90 -51.93 -0.41 0.79 16 16 C -0.12 -1.85 4.73 -26.73 -0.13 -1.98 16 17 C -0.15 -2.36 9.11 37.16 0.34 -2.02 16 18 C -0.10 -1.46 3.26 -104.62 -0.34 -1.80 16 19 C -0.09 -1.09 9.67 -39.59 -0.38 -1.47 16 20 C -0.16 -1.91 10.03 -39.52 -0.40 -2.31 16 21 C 0.09 1.18 7.30 -39.42 -0.29 0.89 16 22 F -0.15 -2.04 17.27 2.25 0.04 -2.00 16 23 C -0.15 -2.19 10.03 -39.52 -0.40 -2.59 16 24 C -0.09 -1.36 6.80 -39.59 -0.27 -1.63 16 25 H 0.10 1.57 7.83 -52.49 -0.41 1.16 16 26 H 0.09 1.15 8.06 -52.48 -0.42 0.72 16 27 H 0.10 1.38 7.97 -52.49 -0.42 0.96 16 28 H 0.09 2.04 6.06 -51.93 -0.31 1.72 16 29 H 0.05 0.83 4.42 -51.93 -0.23 0.60 16 30 H 0.05 1.15 3.17 -51.93 -0.16 0.99 16 31 H -0.01 -0.32 4.50 -51.93 -0.23 -0.55 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.17 6.15 -51.93 -0.32 0.85 16 35 H 0.09 1.59 6.04 -51.93 -0.31 1.27 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.13 1.31 7.97 -52.49 -0.42 0.89 16 39 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.14 2.46 4.88 -52.49 -0.26 2.20 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -28.29 322.23 -7.92 -36.21 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.58 Total: 5.60 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -2.36 Total: -24.03 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.21 Total: -36.46 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.29 -7.92 -36.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292100130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.450 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds