Wall clock time and date at job start Mon Mar 30 2020 02:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50694 * 119.99549 * 2 1 4 4 N 1.46898 * 109.47001 * 121.38551 * 3 2 1 5 5 C 1.46904 * 111.00389 * 194.92639 * 4 3 2 6 6 C 1.50698 * 109.47167 * 63.78403 * 5 4 3 7 7 H 1.08000 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99988 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00251 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00029 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47314 * 89.99540 * 10 8 6 12 12 H 1.48498 * 109.47125 * 209.99423 * 10 8 6 13 13 H 1.48495 * 109.46973 * 329.99279 * 10 8 6 14 14 C 1.46898 * 111.00295 * 70.96604 * 4 3 2 15 15 H 1.09000 * 109.47701 * 272.78316 * 14 4 3 16 16 C 1.53002 * 109.47219 * 152.77650 * 14 4 3 17 17 C 1.53006 * 109.46691 * 63.34903 * 16 14 4 18 18 C 1.50701 * 109.47082 * 32.78157 * 14 4 3 19 19 C 1.38244 * 119.97388 * 230.78073 * 18 14 4 20 20 C 1.38199 * 120.02135 * 180.02562 * 19 18 14 21 21 C 1.38452 * 119.97911 * 0.23474 * 20 19 18 22 22 F 1.35104 * 120.02674 * 179.72725 * 21 20 19 23 23 C 1.38461 * 119.94569 * 359.48732 * 21 20 19 24 24 C 1.38193 * 119.97516 * 0.53682 * 23 21 20 25 25 H 1.07990 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.99644 * 179.97438 * 1 2 3 27 27 H 1.07998 * 119.99891 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47765 * 1.38595 * 3 2 1 29 29 H 1.09001 * 109.47152 * 241.37873 * 3 2 1 30 30 H 1.08997 * 109.47104 * 183.79394 * 5 4 3 31 31 H 1.09005 * 109.46376 * 303.78836 * 5 4 3 32 32 H 0.96995 * 120.00741 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.47571 * 183.34413 * 16 14 4 34 34 H 1.08992 * 109.47321 * 303.35065 * 16 14 4 35 35 H 1.08992 * 109.46857 * 307.46429 * 17 16 14 36 36 H 1.08994 * 109.47330 * 67.46736 * 17 16 14 37 37 H 1.09007 * 109.46585 * 187.46779 * 17 16 14 38 38 H 1.07998 * 119.98757 * 0.02562 * 19 18 14 39 39 H 1.08010 * 120.01061 * 179.97438 * 20 19 18 40 40 H 1.08001 * 120.01189 * 180.25327 * 23 21 20 41 41 H 1.07999 * 119.99189 * 179.74400 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9329 1.3686 1.1823 5 6 3.4088 2.7391 1.4130 6 6 2.2356 3.6326 1.7235 7 1 1.2365 3.2232 1.7475 8 6 2.4379 4.9725 1.9780 9 7 1.4141 5.7524 2.2484 10 14 4.1661 5.6804 1.9372 11 1 4.4768 6.1491 0.5627 12 1 4.2555 6.8228 2.8817 13 1 5.1399 4.6321 2.3346 14 6 4.0595 0.4340 1.0582 15 1 3.7623 -0.5453 1.4333 16 6 5.2455 0.9539 1.8730 17 6 4.8678 0.9934 3.3552 18 6 4.4580 0.3173 -0.3905 19 6 4.5904 -0.9299 -0.9720 20 6 4.9563 -1.0381 -2.3003 21 6 5.1951 0.1029 -3.0473 22 9 5.5582 -0.0020 -4.3444 23 6 5.0565 1.3516 -2.4653 24 6 4.6910 1.4574 -1.1368 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3554 2.1334 0.0249 29 1 2.6714 1.3737 -0.9021 30 1 4.1032 2.7460 2.2531 31 1 3.9160 3.1028 0.5193 32 1 1.5563 6.6951 2.4271 33 1 6.1003 0.2920 1.7335 34 1 5.5049 1.9578 1.5373 35 1 3.9368 1.5466 3.4781 36 1 4.7374 -0.0239 3.7242 37 1 5.6602 1.4857 3.9190 38 1 4.4078 -1.8199 -0.3881 39 1 5.0601 -2.0126 -2.7543 40 1 5.2385 2.2424 -3.0481 41 1 4.5869 2.4312 -0.6815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292100130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:01 Heat of formation + Delta-G solvation = 6.437045 kcal Electronic energy + Delta-G solvation = -22305.985181 eV Core-core repulsion = 19101.018760 eV Total energy + Delta-G solvation = -3204.966421 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.89627 -41.38978 -38.45054 -35.28620 -34.84226 -32.81119 -32.07999 -31.83139 -29.44884 -27.14266 -25.60528 -24.26228 -23.23020 -22.80019 -21.16879 -19.99088 -19.14523 -18.57639 -17.38653 -17.11261 -16.65237 -16.53930 -16.28587 -16.17434 -15.47341 -15.18650 -14.78720 -14.54421 -14.41805 -14.14919 -13.88843 -13.66158 -13.57338 -13.24673 -13.14594 -12.71732 -12.46997 -12.46394 -12.21233 -11.94088 -11.90776 -11.75212 -11.52130 -11.29390 -11.23006 -10.72397 -10.28349 -10.03154 -9.43433 -8.85515 -8.25283 -6.25890 0.14030 0.26609 1.32691 1.34727 1.44428 1.50229 2.34505 2.58187 3.08211 3.27804 3.41960 3.72684 3.77506 3.95189 4.04333 4.16377 4.25629 4.33113 4.42039 4.43554 4.58638 4.66237 4.81052 4.83706 4.92748 4.96321 5.05122 5.05205 5.12649 5.16485 5.19306 5.23370 5.30341 5.34940 5.56475 5.61335 5.67731 5.77252 5.93047 6.03230 6.09655 6.42156 6.73137 6.81279 7.36252 8.91638 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.006399 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.114835 B = 4374.553380 C = 4699.966157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.136 4.136 3 C 0.073 3.927 4 N -0.515 5.515 5 C 0.154 3.846 6 C -0.508 4.508 7 H 0.035 0.965 8 C 0.009 3.991 9 N -0.950 5.950 10 Si 0.933 3.067 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.240 1.240 14 C 0.120 3.880 15 H 0.105 0.895 16 C -0.121 4.121 17 C -0.151 4.151 18 C -0.107 4.107 19 C -0.077 4.077 20 C -0.145 4.145 21 C 0.077 3.923 22 F -0.149 7.149 23 C -0.162 4.162 24 C -0.106 4.106 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.059 0.941 31 H -0.012 1.012 32 H 0.264 0.736 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.135 0.865 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.692 -15.715 -6.451 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.154 4.154 3 C -0.054 4.054 4 N -0.237 5.237 5 C 0.028 3.972 6 C -0.547 4.547 7 H 0.053 0.947 8 C -0.187 4.187 9 N -0.592 5.592 10 Si 0.757 3.243 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.164 1.164 14 C 0.012 3.988 15 H 0.123 0.877 16 C -0.159 4.159 17 C -0.209 4.209 18 C -0.109 4.109 19 C -0.096 4.096 20 C -0.163 4.163 21 C 0.058 3.942 22 F -0.128 7.128 23 C -0.181 4.181 24 C -0.124 4.124 25 H 0.093 0.907 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.005 0.995 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.153 0.847 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.387 -15.671 -6.019 19.234 hybrid contribution 0.588 1.606 -0.955 1.959 sum 9.975 -14.065 -6.974 18.600 Atomic orbital electron populations 1.23886 0.96054 1.01767 1.01627 1.22868 0.95897 0.97745 0.98902 1.21390 0.96010 0.95977 0.92048 1.62349 1.17054 1.07165 1.37154 1.20466 0.95219 0.85921 0.95607 1.21333 0.94235 0.93070 1.46019 0.94702 1.25757 1.00732 0.97452 0.94800 1.70051 1.32686 1.06017 1.50424 0.85919 0.81019 0.78921 0.78451 1.19696 1.21075 1.16354 1.21062 0.90291 0.98141 0.89348 0.87718 1.21801 0.97172 1.01118 0.95797 1.21835 1.01509 1.02440 0.95071 1.20728 0.98810 0.93572 0.97818 1.21177 0.97051 0.97420 0.93915 1.21378 1.01985 0.98133 0.94835 1.17868 1.02549 0.95044 0.78770 1.91465 1.89531 1.97060 1.34710 1.21193 1.03665 0.97117 0.96095 1.21237 0.97771 0.99574 0.93805 0.90673 0.86175 0.85747 0.93355 0.93079 0.92321 0.99467 0.92704 0.89502 0.93265 0.93182 0.91157 0.92711 0.81949 0.82249 0.84686 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.83 14.32 67.77 0.97 -4.86 16 2 C -0.14 -4.17 9.15 25.64 0.23 -3.94 16 3 C 0.07 2.75 4.69 85.56 0.40 3.15 16 4 N -0.51 -19.54 4.26 -884.48 -3.76 -23.30 16 5 C 0.15 6.89 1.89 85.56 0.16 7.05 16 6 C -0.51 -28.61 8.83 25.60 0.23 -28.39 16 7 H 0.03 2.23 7.33 -2.91 -0.02 2.20 16 8 C 0.01 0.54 5.47 84.65 0.46 1.00 16 9 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 10 Si 0.93 43.19 27.47 68.60 1.88 45.08 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 14 C 0.12 3.42 2.13 44.17 0.09 3.51 16 15 H 0.11 2.58 7.90 -2.39 -0.02 2.56 16 16 C -0.12 -3.36 4.73 30.60 0.14 -3.22 16 17 C -0.15 -4.31 9.11 71.98 0.66 -3.65 16 18 C -0.11 -2.82 3.26 -19.86 -0.06 -2.89 16 19 C -0.08 -1.56 9.67 22.26 0.22 -1.34 16 20 C -0.14 -2.92 10.03 22.31 0.22 -2.70 16 21 C 0.08 1.92 7.30 22.37 0.16 2.08 16 22 F -0.15 -3.82 17.27 44.97 0.78 -3.04 16 23 C -0.16 -4.43 10.03 22.31 0.22 -4.21 16 24 C -0.11 -3.17 6.80 22.26 0.15 -3.02 16 25 H 0.07 2.55 7.83 -2.92 -0.02 2.52 16 26 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 27 H 0.12 3.11 7.97 -2.91 -0.02 3.09 16 28 H 0.05 2.23 6.06 -2.39 -0.01 2.22 16 29 H 0.05 1.87 4.42 -2.39 -0.01 1.86 16 30 H 0.06 2.57 3.17 -2.39 -0.01 2.56 16 31 H -0.01 -0.53 4.50 -2.38 -0.01 -0.54 16 32 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.57 6.15 -2.39 -0.01 1.55 16 35 H 0.05 1.80 6.04 -2.39 -0.01 1.78 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.16 2.23 7.97 -2.91 -0.02 2.21 16 39 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.12 4.12 4.88 -2.91 -0.01 4.10 16 Total: -1.00 -65.23 322.23 4.43 -60.80 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.97 Total: 20.93 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 4.26 Total: -41.41 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -3.46 Total: -82.35 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.08 kcal Total: -65.23 4.43 -60.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292100130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.241 kcal (2) G-P(sol) polarization free energy of solvation -65.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds