Wall clock time and date at job start Mon Mar 30 2020 02:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00164 * 2 1 4 4 N 1.46900 * 109.47098 * 125.14689 * 3 2 1 5 5 C 1.46895 * 110.99940 * 199.64161 * 4 3 2 6 6 C 1.50702 * 109.46942 * 66.04876 * 5 4 3 7 7 H 1.08002 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00102 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00126 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99920 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46929 * 60.00230 * 10 8 6 12 12 H 1.48506 * 109.46995 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47464 * 300.00030 * 10 8 6 14 14 C 1.46900 * 110.99857 * 75.69148 * 4 3 2 15 15 C 1.53010 * 109.46868 * 199.68763 * 14 4 3 16 16 C 1.52997 * 109.46994 * 174.85009 * 15 14 4 17 17 C 1.50702 * 109.46880 * 179.97438 * 16 15 14 18 18 C 1.38272 * 119.98887 * 270.25500 * 17 16 15 19 19 C 1.38216 * 120.04926 * 180.25638 * 18 17 16 20 20 C 1.38223 * 120.02740 * 359.49223 * 19 18 17 21 21 C 1.38431 * 119.97301 * 0.25585 * 20 19 18 22 22 F 1.35104 * 120.02810 * 179.97438 * 21 20 19 23 23 C 1.38172 * 119.98543 * 90.00673 * 17 16 15 24 24 H 1.08008 * 119.99633 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00440 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99842 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.46830 * 5.14540 * 3 2 1 28 28 H 1.09003 * 109.46919 * 245.14535 * 3 2 1 29 29 H 1.09001 * 109.47163 * 186.04228 * 5 4 3 30 30 H 1.09001 * 109.47647 * 306.04715 * 5 4 3 31 31 H 0.97005 * 120.00238 * 180.02562 * 9 8 6 32 32 H 1.09000 * 109.47335 * 79.69183 * 14 4 3 33 33 H 1.08995 * 109.47312 * 319.68362 * 14 4 3 34 34 H 1.08993 * 109.46925 * 54.85455 * 15 14 4 35 35 H 1.09001 * 109.47203 * 294.85138 * 15 14 4 36 36 H 1.09006 * 109.47145 * 60.00390 * 16 15 14 37 37 H 1.08990 * 109.47749 * 300.00587 * 16 15 14 38 38 H 1.07994 * 119.97340 * 0.02562 * 18 17 16 39 39 H 1.08001 * 119.98928 * 179.76764 * 19 18 17 40 40 H 1.08004 * 120.01376 * 180.23338 * 20 19 18 41 41 H 1.08006 * 120.01055 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9988 1.3305 1.1325 5 6 3.4018 2.7066 1.4516 6 6 2.2077 3.4756 1.9555 7 1 1.2456 2.9907 2.0307 8 6 2.3435 4.7982 2.3206 9 7 3.5149 5.3888 2.2286 10 14 0.8633 5.7516 2.9445 11 1 0.3306 5.0953 4.1655 12 1 1.2706 7.1427 3.2673 13 1 -0.1883 5.7749 1.8963 14 6 4.1715 0.4870 0.8657 15 6 4.8600 0.1381 2.1868 16 6 6.0036 -0.8432 1.9224 17 6 6.6820 -1.1864 3.2236 18 6 7.7432 -0.4219 3.6723 19 6 8.3698 -0.7387 4.8629 20 6 7.9294 -1.8139 5.6115 21 6 6.8637 -2.5768 5.1659 22 9 6.4327 -3.6283 5.8965 23 6 6.2401 -2.2617 3.9702 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3588 2.1315 0.0922 28 1 2.6192 1.4038 -0.9325 29 1 4.1741 2.6899 2.2207 30 1 3.7922 3.1881 0.5551 31 1 3.6105 6.3193 2.4857 32 1 4.8685 1.0262 0.2241 33 1 3.8543 -0.4295 0.3682 34 1 4.1379 -0.3193 2.8630 35 1 5.2578 1.0461 2.6401 36 1 6.7258 -0.3858 1.2461 37 1 5.6059 -1.7511 1.4690 38 1 8.0851 0.4211 3.0902 39 1 9.2010 -0.1432 5.2106 40 1 8.4167 -2.0589 6.5437 41 1 5.4088 -2.8565 3.6212 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292298336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:07 Heat of formation + Delta-G solvation = -12.794459 kcal Electronic energy + Delta-G solvation = -20578.939355 eV Core-core repulsion = 17373.138994 eV Total energy + Delta-G solvation = -3205.800362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.93151 -39.26412 -37.32367 -34.37233 -33.10837 -32.18283 -30.65680 -29.93248 -27.21026 -26.00745 -23.94013 -22.77760 -22.27151 -20.96532 -20.13761 -19.05905 -17.28306 -16.53548 -16.33071 -16.19434 -15.63480 -15.17197 -14.85334 -14.53651 -14.22898 -13.95485 -13.58562 -13.48853 -13.15305 -12.79626 -12.52148 -12.22086 -11.87653 -11.83889 -11.53560 -11.48341 -11.26247 -11.09798 -10.79446 -10.68557 -10.48655 -10.39953 -10.11441 -9.75675 -9.21085 -8.97827 -8.88933 -8.67209 -8.42901 -7.22919 -6.02795 -4.03680 1.11896 1.16098 2.75532 3.33560 3.37604 3.40947 3.53313 4.17400 4.43025 4.61431 4.72107 4.92752 5.04862 5.17687 5.25139 5.32511 5.36692 5.41164 5.59028 5.67238 5.69676 5.82714 5.90751 5.98262 6.04559 6.05496 6.15380 6.17722 6.27018 6.29513 6.41692 6.57171 6.65961 6.75265 6.86048 7.05663 7.26423 7.32346 7.34440 7.81615 8.10497 8.21296 8.55926 9.04035 9.60504 11.07999 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014239 B = 0.004002 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.996353 B = 6994.089797 C = 8022.033873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.129 4.129 3 C 0.082 3.918 4 N -0.533 5.533 5 C 0.193 3.807 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.056 3.944 15 C -0.106 4.106 16 C -0.082 4.082 17 C -0.042 4.042 18 C -0.126 4.126 19 C -0.089 4.089 20 C -0.165 4.165 21 C 0.096 3.904 22 F -0.144 7.144 23 C -0.152 4.152 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.034 0.966 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.467 -14.069 0.407 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.148 4.148 3 C -0.045 4.045 4 N -0.257 5.257 5 C 0.068 3.932 6 C -0.547 4.547 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.073 4.073 15 C -0.144 4.144 16 C -0.120 4.120 17 C -0.042 4.042 18 C -0.144 4.144 19 C -0.107 4.107 20 C -0.184 4.184 21 C 0.077 3.923 22 F -0.122 7.122 23 C -0.171 4.171 24 H 0.114 0.886 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.007 0.993 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.304 -14.101 0.877 15.904 hybrid contribution -0.375 0.735 -0.064 0.827 sum 6.929 -13.366 0.813 15.077 Atomic orbital electron populations 1.23693 0.95996 1.01166 1.03277 1.22987 0.95832 0.98478 0.97457 1.21179 0.96110 0.95470 0.91766 1.62099 1.13018 1.14122 1.36485 1.19766 0.96694 0.81508 0.95265 1.21144 0.95701 0.95026 1.42793 0.91927 1.24968 0.95949 0.97664 0.95893 1.69943 1.22945 1.12295 1.48665 0.86595 0.82820 0.78773 0.79445 1.20158 1.21368 1.20291 1.22047 0.92557 0.96962 0.95703 1.21526 0.95732 0.98661 0.98456 1.20689 0.97994 1.00328 0.93003 1.19836 0.94568 0.93257 0.96516 1.21199 0.96354 0.99966 0.96920 1.21002 0.99463 0.95957 0.94277 1.21092 0.97957 0.97486 1.01822 1.17707 0.96267 0.86883 0.91412 1.91486 1.89180 1.54898 1.76661 1.21052 1.01724 0.99852 0.94452 0.88636 0.89338 0.88466 0.89094 0.95456 0.94827 0.99295 0.92905 0.95700 0.92385 0.91167 0.91233 0.90733 0.90953 0.85162 0.85106 0.85104 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.07 14.32 29.02 0.42 -2.65 16 2 C -0.13 -2.10 9.33 -36.02 -0.34 -2.43 16 3 C 0.08 1.59 5.24 -4.97 -0.03 1.57 16 4 N -0.53 -11.22 4.35 -237.51 -1.03 -12.26 16 5 C 0.19 4.91 4.55 -4.98 -0.02 4.89 16 6 C -0.51 -14.13 8.23 -34.44 -0.28 -14.41 16 7 H 0.06 1.74 7.31 -52.49 -0.38 1.35 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.06 0.96 4.81 -3.82 -0.02 0.94 16 15 C -0.11 -1.66 5.23 -26.73 -0.14 -1.80 16 16 C -0.08 -0.99 5.34 -27.88 -0.15 -1.14 16 17 C -0.04 -0.51 5.13 -104.63 -0.54 -1.05 16 18 C -0.13 -1.46 9.70 -39.58 -0.38 -1.85 16 19 C -0.09 -0.93 10.04 -39.59 -0.40 -1.33 16 20 C -0.16 -1.81 10.03 -39.52 -0.40 -2.21 16 21 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 22 F -0.14 -1.86 17.27 2.25 0.04 -1.82 16 23 C -0.15 -1.87 9.68 -39.51 -0.38 -2.26 16 24 H 0.10 1.48 7.84 -52.48 -0.41 1.06 16 25 H 0.09 1.13 8.06 -52.49 -0.42 0.71 16 26 H 0.10 1.43 7.28 -52.48 -0.38 1.05 16 27 H 0.09 1.95 6.23 -51.93 -0.32 1.63 16 28 H 0.03 0.51 8.00 -51.93 -0.42 0.09 16 29 H 0.03 0.91 6.72 -51.93 -0.35 0.56 16 30 H -0.01 -0.29 8.12 -51.93 -0.42 -0.72 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 33 H 0.06 0.87 6.81 -51.93 -0.35 0.52 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.24 6.96 -51.93 -0.36 0.88 16 36 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -29.70 346.31 -9.43 -39.13 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.33 Total: 0.19 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -3.04 Total: -21.32 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: -0.30 Total: -37.97 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.70 -9.43 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292298336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.337 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds