Wall clock time and date at job start Mon Mar 30 2020 02:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 H 1.08990 * 109.47349 * 55.00198 * 3 2 1 5 5 C 1.50700 * 109.46966 * 174.99879 * 3 2 1 6 6 H 1.08010 * 120.00095 * 119.99671 * 5 3 2 7 7 C 1.37880 * 120.00306 * 300.00042 * 5 3 2 8 8 N 1.31519 * 119.99519 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00264 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47192 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46874 * 119.99969 * 9 7 5 12 12 H 1.48496 * 109.47072 * 240.00099 * 9 7 5 13 13 N 1.46497 * 109.46887 * 294.99862 * 3 2 1 14 14 C 1.34777 * 120.00018 * 85.00824 * 13 3 2 15 15 O 1.21598 * 119.99862 * 359.97438 * 14 13 3 16 16 C 1.47427 * 119.99802 * 179.97438 * 14 13 3 17 17 C 1.38043 * 126.41624 * 0.03399 * 16 14 13 18 18 N 1.34265 * 107.41926 * 179.97438 * 17 16 14 19 19 C 1.46490 * 125.75737 * 180.02562 * 18 17 16 20 20 N 1.39936 * 108.48879 * 0.02562 * 18 17 16 21 21 C 1.30454 * 108.89741 * 359.97438 * 20 18 17 22 22 C 1.50697 * 125.98657 * 180.02562 * 21 20 18 23 23 C 1.53000 * 117.50301 * 8.59622 * 22 21 20 24 24 C 1.52996 * 60.00329 * 252.51307 * 23 22 21 25 25 H 1.09001 * 109.47024 * 300.00316 * 1 2 3 26 26 H 1.08999 * 109.47220 * 59.99817 * 1 2 3 27 27 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47024 * 239.99684 * 2 1 3 29 29 H 1.09004 * 109.46584 * 119.99891 * 2 1 3 30 30 H 0.96998 * 119.99342 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00133 * 264.99687 * 13 3 2 32 32 H 1.08003 * 126.29246 * 359.97375 * 17 16 14 33 33 H 1.09002 * 109.47729 * 270.00881 * 19 18 17 34 34 H 1.09002 * 109.46888 * 30.00778 * 19 18 17 35 35 H 1.09001 * 109.47601 * 150.00549 * 19 18 17 36 36 H 1.09000 * 115.54956 * 154.31086 * 22 21 20 37 37 H 1.09005 * 117.49496 * 0.02562 * 23 22 21 38 38 H 1.09000 * 117.50088 * 145.02253 * 23 22 21 39 39 H 1.09007 * 117.49698 * 252.51288 * 24 23 22 40 40 H 1.08995 * 117.52230 * 107.47746 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.5988 1.5451 0.1937 11 1 6.3999 1.6155 2.6092 12 1 6.4961 -0.5192 1.4627 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3415 2.6320 -0.4319 16 6 0.0454 3.3240 -2.6265 17 6 0.8175 3.4373 -3.7653 18 7 0.0926 4.1044 -4.6776 19 6 0.5285 4.4462 -6.0337 20 7 -1.1494 4.4181 -4.1144 21 6 -1.1883 3.9583 -2.8942 22 6 -2.3465 4.0818 -1.9380 23 6 -3.6641 4.6287 -2.4909 24 6 -2.8065 5.4923 -1.5639 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8901 30 1 3.8293 -0.0619 2.9494 31 1 2.2720 2.1231 -1.9978 32 1 1.8203 3.0589 -3.8980 33 1 1.0185 5.4198 -6.0234 34 1 1.2283 3.6910 -6.3916 35 1 -0.3370 4.4820 -6.6954 36 1 -2.4041 3.3128 -1.1676 37 1 -3.6934 4.8987 -3.5466 38 1 -4.5890 4.2193 -2.0845 39 1 -3.1671 5.6511 -0.5475 40 1 -2.2711 6.3309 -2.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292422821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:38 Heat of formation + Delta-G solvation = 58.391154 kcal Electronic energy + Delta-G solvation = -21688.899352 eV Core-core repulsion = 18506.105792 eV Total energy + Delta-G solvation = -3182.793560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26693 -38.46714 -36.97705 -34.89981 -32.97237 -32.34945 -31.12920 -29.74321 -27.33806 -26.74510 -23.59445 -22.76728 -22.29954 -22.01319 -20.16673 -19.22208 -18.97786 -17.67332 -16.29217 -15.72412 -15.47817 -15.21769 -15.03268 -14.55473 -14.26598 -14.13868 -13.36684 -13.06404 -12.88327 -12.65317 -12.54549 -11.89984 -11.70914 -11.44466 -11.40588 -11.23197 -10.95406 -10.87220 -10.80657 -10.67465 -10.28191 -10.18369 -10.09357 -9.56334 -9.07571 -8.99379 -8.87480 -8.45753 -8.40421 -7.68938 -6.09155 -4.18061 1.70924 2.35838 2.39238 3.24738 3.32690 3.34768 4.03366 4.20960 4.27518 4.35493 4.52290 4.63085 4.81963 4.93736 5.05223 5.17610 5.19494 5.22327 5.30119 5.66236 5.75757 5.77160 5.94635 5.98879 6.25726 6.43998 6.46748 6.54764 6.63535 6.75182 6.88339 7.12792 7.28293 7.44942 7.56057 7.66899 7.70266 7.83371 7.97348 8.23852 8.77298 8.85477 9.27724 9.50327 10.96218 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.004760 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.042089 B = 5880.763985 C = 6664.093835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.707 5.707 14 C 0.579 3.421 15 O -0.547 6.547 16 C -0.267 4.267 17 C 0.090 3.910 18 N -0.368 5.368 19 C 0.101 3.899 20 N -0.307 5.307 21 C 0.159 3.841 22 C -0.075 4.075 23 C -0.172 4.172 24 C -0.160 4.160 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.020 0.980 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.263 0.737 31 H 0.383 0.617 32 H 0.182 0.818 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 6.662 -14.051 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.355 5.355 14 C 0.364 3.636 15 O -0.426 6.426 16 C -0.282 4.282 17 C -0.060 4.060 18 N -0.147 5.147 19 C -0.041 4.041 20 N -0.129 5.129 21 C -0.008 4.008 22 C -0.095 4.095 23 C -0.210 4.210 24 C -0.198 4.198 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.215 0.785 32 H 0.199 0.801 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.159 0.841 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.356 7.185 -14.255 17.577 hybrid contribution 2.042 -0.499 0.172 2.110 sum -5.314 6.685 -14.083 16.470 Atomic orbital electron populations 1.21839 0.98303 0.97914 1.01397 1.21925 0.92695 0.99838 1.02097 1.18760 0.94035 0.89132 0.81077 0.93202 1.21273 0.90825 1.38762 1.06179 0.92180 1.24879 0.98449 0.94902 0.95441 1.69911 1.34933 1.37706 1.09354 0.86431 0.85085 0.77709 0.78072 1.19832 1.20924 1.20930 1.46333 1.14389 1.56393 1.18343 1.17160 0.82569 0.78310 0.85525 1.90693 1.51540 1.60667 1.39743 1.20613 0.96372 1.14109 0.97081 1.23110 0.98097 0.95717 0.89120 1.48167 1.11347 1.43019 1.12211 1.21899 1.01377 1.02056 0.78720 1.77026 0.99962 1.25652 1.10225 1.21402 0.94066 0.94052 0.91276 1.20524 0.90289 0.99504 0.99166 1.22986 0.94139 1.03995 0.99861 1.22923 1.03139 0.93274 1.00490 0.93112 0.94081 0.96051 0.95200 0.88402 0.92674 0.78526 0.80066 0.90591 0.89228 0.89229 0.84065 0.88449 0.88493 0.88149 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.81 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.60 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 N -0.71 -14.73 5.01 -56.02 -0.28 -15.01 16 14 C 0.58 11.96 6.38 -12.52 -0.08 11.88 16 15 O -0.55 -12.82 12.13 5.28 0.06 -12.76 16 16 C -0.27 -4.63 6.13 -105.07 -0.64 -5.27 16 17 C 0.09 1.21 10.99 -16.56 -0.18 1.02 16 18 N -0.37 -4.65 3.98 -67.60 -0.27 -4.92 16 19 C 0.10 0.73 11.44 59.84 0.68 1.41 16 20 N -0.31 -4.73 12.08 33.89 0.41 -4.32 16 21 C 0.16 2.67 6.80 -82.02 -0.56 2.11 16 22 C -0.07 -1.17 5.65 -91.77 -0.52 -1.69 16 23 C -0.17 -2.16 10.14 -26.73 -0.27 -2.43 16 24 C -0.16 -2.12 10.23 -26.73 -0.27 -2.39 16 25 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 26 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.38 6.83 7.46 -40.82 -0.30 6.53 16 32 H 0.18 1.80 7.46 -52.48 -0.39 1.41 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.14 2.46 6.73 -51.93 -0.35 2.11 16 37 H 0.10 1.22 7.90 -51.93 -0.41 0.81 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -32.05 331.09 -7.48 -39.54 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.78 Total: 8.28 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.22 Total: -7.25 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.49 Total: -48.22 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.06 Total: -12.76 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.05 -7.48 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292422821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.929 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds