Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 H 1.08990 * 109.47349 * 55.00198 * 3 2 1 5 5 C 1.50700 * 109.46966 * 174.99879 * 3 2 1 6 6 H 1.08010 * 120.00095 * 119.99671 * 5 3 2 7 7 C 1.37880 * 120.00306 * 300.00042 * 5 3 2 8 8 N 1.31519 * 119.99519 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00264 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47192 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46874 * 119.99969 * 9 7 5 12 12 H 1.48496 * 109.47072 * 240.00099 * 9 7 5 13 13 N 1.46497 * 109.46887 * 294.99862 * 3 2 1 14 14 C 1.34777 * 120.00018 * 85.00824 * 13 3 2 15 15 O 1.21598 * 119.99862 * 359.97438 * 14 13 3 16 16 C 1.47427 * 119.99802 * 179.97438 * 14 13 3 17 17 C 1.38043 * 126.41624 * 0.03399 * 16 14 13 18 18 N 1.34265 * 107.41926 * 179.97438 * 17 16 14 19 19 C 1.46490 * 125.75737 * 180.02562 * 18 17 16 20 20 N 1.39936 * 108.48879 * 0.02562 * 18 17 16 21 21 C 1.30454 * 108.89741 * 359.97438 * 20 18 17 22 22 C 1.50697 * 125.98657 * 180.02562 * 21 20 18 23 23 C 1.53000 * 117.50301 * 8.59622 * 22 21 20 24 24 C 1.52996 * 60.00329 * 252.51307 * 23 22 21 25 25 H 1.09001 * 109.47024 * 300.00316 * 1 2 3 26 26 H 1.08999 * 109.47220 * 59.99817 * 1 2 3 27 27 H 1.08997 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47024 * 239.99684 * 2 1 3 29 29 H 1.09004 * 109.46584 * 119.99891 * 2 1 3 30 30 H 0.96998 * 119.99342 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00133 * 264.99687 * 13 3 2 32 32 H 1.08003 * 126.29246 * 359.97375 * 17 16 14 33 33 H 1.09002 * 109.47729 * 270.00881 * 19 18 17 34 34 H 1.09002 * 109.46888 * 30.00778 * 19 18 17 35 35 H 1.09001 * 109.47601 * 150.00549 * 19 18 17 36 36 H 1.09000 * 115.54956 * 154.31086 * 22 21 20 37 37 H 1.09005 * 117.49496 * 0.02562 * 23 22 21 38 38 H 1.09000 * 117.50088 * 145.02253 * 23 22 21 39 39 H 1.09007 * 117.49698 * 252.51288 * 24 23 22 40 40 H 1.08995 * 117.52230 * 107.47746 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.5988 1.5451 0.1937 11 1 6.3999 1.6155 2.6092 12 1 6.4961 -0.5192 1.4627 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3415 2.6320 -0.4319 16 6 0.0454 3.3240 -2.6265 17 6 0.8175 3.4373 -3.7653 18 7 0.0926 4.1044 -4.6776 19 6 0.5285 4.4462 -6.0337 20 7 -1.1494 4.4181 -4.1144 21 6 -1.1883 3.9583 -2.8942 22 6 -2.3465 4.0818 -1.9380 23 6 -3.6641 4.6287 -2.4909 24 6 -2.8065 5.4923 -1.5639 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8901 30 1 3.8293 -0.0619 2.9494 31 1 2.2720 2.1231 -1.9978 32 1 1.8203 3.0589 -3.8980 33 1 1.0185 5.4198 -6.0234 34 1 1.2283 3.6910 -6.3916 35 1 -0.3370 4.4820 -6.6954 36 1 -2.4041 3.3128 -1.1676 37 1 -3.6934 4.8987 -3.5466 38 1 -4.5890 4.2193 -2.0845 39 1 -3.1671 5.6511 -0.5475 40 1 -2.2711 6.3309 -2.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292422821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = 37.584438 kcal Electronic energy + Delta-G solvation = -21689.801599 eV Core-core repulsion = 18506.105792 eV Total energy + Delta-G solvation = -3183.695807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.40558 -40.12458 -38.05942 -36.76199 -34.25816 -33.92240 -32.90053 -31.09688 -28.84958 -28.04364 -25.25628 -24.26560 -23.37410 -23.17361 -21.82308 -20.87622 -20.23210 -19.15453 -17.85608 -17.13963 -16.85270 -16.65324 -16.26333 -15.94731 -15.82116 -15.51922 -14.85887 -14.57230 -14.08320 -13.81990 -13.62605 -13.48309 -13.30060 -13.13543 -12.89361 -12.77341 -12.66804 -12.41052 -12.12181 -12.08649 -11.91400 -11.71284 -11.53708 -11.30745 -10.98032 -10.57904 -10.42977 -10.16390 -9.69970 -9.37470 -8.11439 -6.28267 0.60098 1.09276 1.46710 1.47655 1.49366 1.59395 2.40689 2.63775 2.80337 3.06341 3.18526 3.37601 3.61090 3.94928 4.02335 4.17549 4.34607 4.44581 4.46151 4.53427 4.55009 4.62887 4.71710 4.74467 4.78095 4.84587 4.94384 5.13549 5.23000 5.27084 5.32448 5.46212 5.50614 5.62414 5.71604 5.86058 5.93894 6.03046 6.23084 6.57542 6.80518 7.14666 7.39263 7.72789 8.94290 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.004760 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.042089 B = 5880.763985 C = 6664.093835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.544 4.544 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.703 5.703 14 C 0.578 3.422 15 O -0.585 6.585 16 C -0.311 4.311 17 C 0.117 3.883 18 N -0.357 5.357 19 C 0.087 3.913 20 N -0.320 5.320 21 C 0.146 3.854 22 C -0.107 4.107 23 C -0.147 4.147 24 C -0.155 4.155 25 H 0.025 0.975 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.264 0.736 31 H 0.400 0.600 32 H 0.221 0.779 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 7.254 -16.958 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.582 4.582 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.213 1.213 12 H -0.206 1.206 13 N -0.352 5.352 14 C 0.366 3.634 15 O -0.467 6.467 16 C -0.326 4.326 17 C -0.036 4.036 18 N -0.135 5.135 19 C -0.051 4.051 20 N -0.142 5.142 21 C -0.019 4.019 22 C -0.127 4.127 23 C -0.184 4.184 24 C -0.193 4.193 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.234 0.766 32 H 0.238 0.762 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.145 7.806 -17.236 19.894 hybrid contribution 1.638 -0.630 0.984 2.011 sum -4.507 7.177 -16.252 18.329 Atomic orbital electron populations 1.21663 0.97161 0.98873 1.00249 1.21774 0.93600 0.99282 1.01178 1.18335 0.93598 0.89014 0.81327 0.98509 1.21613 0.91364 1.38594 1.06622 0.90886 1.25765 1.03180 0.94487 0.95076 1.70069 1.36934 1.38527 1.09923 0.85336 0.79298 0.77727 0.78179 1.18251 1.21283 1.20564 1.46030 1.15105 1.56522 1.17497 1.17620 0.81775 0.77604 0.86392 1.90669 1.52528 1.61999 1.41542 1.20371 0.98112 1.17053 0.97091 1.23553 0.98774 0.93631 0.87657 1.48645 1.10171 1.41138 1.13548 1.22422 1.02603 1.04167 0.75931 1.76974 1.01631 1.26058 1.09535 1.21528 0.94196 0.94325 0.91901 1.20445 0.92301 1.00208 0.99733 1.23032 0.93402 1.02094 0.99899 1.22977 1.02938 0.92041 1.01318 0.95534 0.93935 0.93853 0.94085 0.91068 0.92723 0.76576 0.76235 0.88815 0.85902 0.88404 0.86832 0.88104 0.86643 0.87256 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.48 2.24 44.25 0.10 14.58 16 4 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 5 C -0.54 -28.47 8.73 25.60 0.22 -28.25 16 6 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.47 11.29 21.45 0.24 -52.23 16 9 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 10 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 12 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 13 N -0.70 -29.44 5.01 -449.39 -2.25 -31.69 16 14 C 0.58 24.48 6.38 86.66 0.55 25.04 16 15 O -0.59 -29.05 12.13 -4.03 -0.05 -29.10 16 16 C -0.31 -10.68 6.13 -20.15 -0.12 -10.80 16 17 C 0.12 2.82 10.99 84.27 0.93 3.74 16 18 N -0.36 -7.92 3.98 -367.79 -1.46 -9.39 16 19 C 0.09 0.89 11.44 127.77 1.46 2.35 16 20 N -0.32 -9.35 12.08 -46.68 -0.56 -9.91 16 21 C 0.15 4.91 6.80 43.51 0.30 5.21 16 22 C -0.11 -3.43 5.65 -11.54 -0.07 -3.50 16 23 C -0.15 -3.57 10.14 30.59 0.31 -3.26 16 24 C -0.15 -4.09 10.23 30.59 0.31 -3.77 16 25 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 26 H 0.04 1.94 5.64 -2.39 -0.01 1.93 16 27 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.07 3.96 5.95 -2.38 -0.01 3.95 16 30 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.40 13.71 7.46 -92.71 -0.69 13.01 16 32 H 0.22 3.39 7.46 -2.91 -0.02 3.36 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 4.25 6.73 -2.39 -0.02 4.24 16 37 H 0.10 2.39 7.90 -2.38 -0.02 2.37 16 38 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -72.94 331.09 3.52 -69.41 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.36 Total: 27.48 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 5.22 Total: -8.27 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -4.04 Total: -103.22 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.05 Total: -29.10 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -72.94 3.52 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292422821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.999 kcal (2) G-P(sol) polarization free energy of solvation -72.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds