Wall clock time and date at job start Mon Mar 30 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21606 * 119.99522 * 359.97438 * 14 13 3 16 16 C 1.47426 * 120.00042 * 180.02562 * 14 13 3 17 17 C 1.38042 * 126.41717 * 0.02562 * 16 14 13 18 18 N 1.34258 * 107.41690 * 179.97438 * 17 16 14 19 19 C 1.46505 * 125.75370 * 179.97438 * 18 17 16 20 20 N 1.39929 * 108.49421 * 359.97438 * 18 17 16 21 21 C 1.30451 * 108.89834 * 359.73583 * 20 18 17 22 22 C 1.50695 * 125.99396 * 180.26671 * 21 20 18 23 23 C 1.53005 * 117.49672 * 8.78697 * 22 21 20 24 24 C 1.53000 * 60.00268 * 252.51418 * 23 22 21 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 32 32 H 1.08004 * 126.29338 * 359.97438 * 17 16 14 33 33 H 1.08996 * 109.47010 * 89.99810 * 19 18 17 34 34 H 1.08999 * 109.47121 * 209.99886 * 19 18 17 35 35 H 1.09001 * 109.46994 * 330.00422 * 19 18 17 36 36 H 1.09001 * 115.55386 * 154.50161 * 22 21 20 37 37 H 1.09002 * 117.49918 * 0.02562 * 23 22 21 38 38 H 1.09001 * 117.49298 * 145.02455 * 23 22 21 39 39 H 1.08997 * 117.49792 * 252.51242 * 24 23 22 40 40 H 1.08999 * 117.51698 * 107.48082 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3413 2.6325 0.4317 16 6 0.0455 3.3239 2.6266 17 6 0.8181 3.4385 3.7648 18 7 0.0935 4.1062 4.6768 19 6 0.5300 4.4494 6.0326 20 7 -1.1489 4.4190 4.1141 21 6 -1.1861 3.9635 2.8923 22 6 -2.3416 4.0931 1.9336 23 6 -3.5054 4.9958 2.3479 24 6 -3.6780 3.4756 2.3505 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 2.2720 2.1230 1.9978 32 1 1.8211 3.0605 3.8974 33 1 1.0195 5.4231 6.0210 34 1 -0.3352 4.4854 6.6946 35 1 1.2304 3.6949 6.3906 36 1 -2.0806 4.0613 0.8758 37 1 -3.4351 5.4963 3.3136 38 1 -4.0102 5.5583 1.5624 39 1 -4.2964 3.0380 1.5668 40 1 -3.7213 2.9753 3.3179 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292422831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:42 Heat of formation + Delta-G solvation = 58.517759 kcal Electronic energy + Delta-G solvation = -21698.884204 eV Core-core repulsion = 18516.096134 eV Total energy + Delta-G solvation = -3182.788070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26728 -38.46450 -36.97761 -34.89805 -32.97131 -32.34822 -31.12414 -29.74132 -27.33604 -26.74344 -23.59501 -22.75681 -22.29776 -22.01872 -20.16439 -19.22248 -18.97449 -17.67209 -16.29403 -15.67156 -15.54138 -15.19819 -15.03007 -14.57101 -14.27599 -14.09526 -13.41861 -13.02393 -12.85289 -12.67190 -12.55954 -11.87626 -11.71888 -11.42815 -11.41566 -11.21928 -10.97498 -10.88761 -10.78515 -10.66604 -10.29802 -10.18268 -10.08007 -9.55833 -9.07598 -9.00802 -8.87349 -8.44806 -8.40449 -7.68754 -6.08537 -4.17702 1.70978 2.36018 2.39006 3.26686 3.32418 3.33111 4.03363 4.20993 4.27693 4.35288 4.52669 4.62905 4.81882 4.93905 5.05079 5.17564 5.19430 5.22656 5.30018 5.66236 5.75634 5.77129 5.94534 5.98760 6.25559 6.44165 6.47443 6.55616 6.63731 6.75968 6.88316 7.13572 7.28821 7.45493 7.56323 7.66838 7.70307 7.83719 7.97536 8.24311 8.77175 8.85529 9.27770 9.50510 10.96669 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021070 B = 0.004789 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.572444 B = 5845.624010 C = 6735.295715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.707 5.707 14 C 0.579 3.421 15 O -0.547 6.547 16 C -0.267 4.267 17 C 0.090 3.910 18 N -0.368 5.368 19 C 0.101 3.899 20 N -0.307 5.307 21 C 0.159 3.841 22 C -0.075 4.075 23 C -0.172 4.172 24 C -0.160 4.160 25 H 0.020 0.980 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.098 0.902 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.383 0.617 32 H 0.182 0.818 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 6.198 14.201 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.364 3.636 15 O -0.426 6.426 16 C -0.282 4.282 17 C -0.060 4.060 18 N -0.147 5.147 19 C -0.040 4.040 20 N -0.129 5.129 21 C -0.008 4.008 22 C -0.095 4.095 23 C -0.210 4.210 24 C -0.198 4.198 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.215 0.785 32 H 0.199 0.801 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.159 0.841 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.549 6.722 14.394 17.589 hybrid contribution 2.040 -0.520 -0.137 2.110 sum -5.509 6.202 14.257 16.495 Atomic orbital electron populations 1.21835 0.98265 0.97895 1.01430 1.21928 0.92712 0.99842 1.02094 1.18749 0.93988 0.89131 0.81062 0.93218 1.21199 0.90814 1.38829 1.06354 0.92287 1.24873 0.98435 0.94875 0.95434 1.69888 1.35115 1.37494 1.09402 0.86545 0.85080 0.78241 0.77414 1.20249 1.21159 1.20249 1.46332 1.14380 1.56403 1.18341 1.17163 0.82530 0.78338 0.85538 1.90696 1.51579 1.60564 1.39806 1.20616 0.96475 1.13969 0.97116 1.23108 0.98094 0.95657 0.89190 1.48168 1.11300 1.43025 1.12251 1.21901 1.01357 1.02061 0.78729 1.77022 1.00008 1.25662 1.10170 1.21402 0.94175 0.93993 0.91226 1.20526 0.85048 1.05527 0.98369 1.22988 1.01542 0.93221 1.03227 1.22920 0.98320 0.95698 1.02878 0.96082 0.94044 0.93119 0.88391 0.95224 0.92557 0.78532 0.80067 0.90559 0.89247 0.89242 0.84063 0.88446 0.88487 0.88166 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.83 2.24 -69.09 -0.16 6.68 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.60 11.28 55.43 0.63 -23.97 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.71 -14.73 5.01 -56.01 -0.28 -15.01 16 14 C 0.58 11.96 6.38 -12.52 -0.08 11.88 16 15 O -0.55 -12.82 12.13 5.27 0.06 -12.76 16 16 C -0.27 -4.63 6.13 -105.07 -0.64 -5.27 16 17 C 0.09 1.20 10.99 -16.56 -0.18 1.02 16 18 N -0.37 -4.65 3.98 -67.60 -0.27 -4.92 16 19 C 0.10 0.73 11.44 59.85 0.68 1.41 16 20 N -0.31 -4.73 12.08 33.90 0.41 -4.32 16 21 C 0.16 2.67 6.79 -82.02 -0.56 2.11 16 22 C -0.07 -1.17 5.65 -91.77 -0.52 -1.69 16 23 C -0.17 -2.16 10.14 -26.73 -0.27 -2.43 16 24 C -0.16 -2.10 10.23 -26.73 -0.27 -2.37 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.93 5.65 -51.93 -0.29 0.63 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 28 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.38 6.83 7.46 -40.82 -0.30 6.52 16 32 H 0.18 1.80 7.46 -52.48 -0.39 1.40 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.14 2.46 6.74 -51.93 -0.35 2.11 16 37 H 0.10 1.22 7.90 -51.93 -0.41 0.81 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 331.08 15.07 4.99 4.99 Total: -1.00 -32.01 331.08 -7.48 -39.49 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.78 Total: 8.34 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -2.22 Total: -7.25 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.49 Total: -48.22 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.06 Total: -12.76 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.01 -7.48 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292422831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.008 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds