Wall clock time and date at job start Mon Mar 30 2020 02:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50691 * 119.99944 * 2 1 4 4 N 1.46506 * 109.47112 * 125.00332 * 3 2 1 5 5 C 1.46500 * 120.00412 * 85.01793 * 4 3 2 6 6 C 1.50705 * 109.47070 * 95.45598 * 5 4 3 7 7 H 1.07997 * 119.99967 * 0.02562 * 6 5 4 8 8 C 1.37869 * 119.99802 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00062 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00022 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46749 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47096 * 119.99978 * 10 8 6 13 13 H 1.48497 * 109.47016 * 240.00273 * 10 8 6 14 14 C 1.34780 * 119.99260 * 264.74256 * 4 3 2 15 15 O 1.21617 * 120.00334 * 5.58497 * 14 4 3 16 16 C 1.47327 * 119.99696 * 185.58742 * 14 4 3 17 17 C 1.36417 * 126.23918 * 175.13030 * 16 14 4 18 18 N 1.35374 * 106.87658 * 179.97438 * 17 16 14 19 19 C 1.46498 * 126.13647 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.46907 * 120.00203 * 19 18 17 21 21 C 1.53008 * 109.46985 * 240.00008 * 19 18 17 22 22 C 1.35848 * 107.72704 * 0.02562 * 18 17 16 23 23 N 1.30176 * 109.00282 * 359.75957 * 22 18 17 24 24 H 1.07994 * 119.99816 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.00048 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99421 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47518 * 5.00113 * 3 2 1 28 28 H 1.09001 * 109.47180 * 244.99548 * 3 2 1 29 29 H 1.08998 * 109.47140 * 215.45701 * 5 4 3 30 30 H 1.09001 * 109.46673 * 335.46061 * 5 4 3 31 31 H 0.97000 * 119.99946 * 179.97438 * 9 8 6 32 32 H 1.08003 * 126.56223 * 359.93471 * 17 16 14 33 33 H 1.09000 * 109.47323 * 359.97438 * 19 18 17 34 34 H 1.08995 * 109.47832 * 60.00300 * 20 19 18 35 35 H 1.09010 * 109.46670 * 179.97438 * 20 19 18 36 36 H 1.09000 * 109.47011 * 299.99246 * 20 19 18 37 37 H 1.08993 * 109.47130 * 59.99897 * 21 19 18 38 38 H 1.08995 * 109.47040 * 180.02562 * 21 19 18 39 39 H 1.09000 * 109.46946 * 300.00055 * 21 19 18 40 40 H 1.07999 * 125.49702 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 4.3219 0.7271 1.0023 6 6 5.3237 1.7897 0.6302 7 1 5.0032 2.8131 0.5030 8 6 6.6495 1.4554 0.4531 9 7 7.0398 0.2092 0.6084 10 14 7.8914 2.7726 -0.0075 11 1 7.2033 4.0837 -0.1206 12 1 8.9396 2.8531 1.0413 13 1 8.5185 2.4283 -1.3088 14 6 2.6298 1.9177 2.2893 15 8 1.4957 2.3338 2.4301 16 6 3.6058 2.0543 3.3844 17 6 3.4052 2.7037 4.5672 18 7 4.5508 2.5871 5.2789 19 6 4.7965 3.1327 6.6161 20 6 5.1252 1.9911 7.5801 21 6 5.9740 4.1082 6.5605 22 6 5.4322 1.8745 4.5300 23 7 4.8672 1.5526 3.4023 24 1 -0.5399 0.9353 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8499 -0.9354 0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4025 -0.9314 29 1 4.6086 0.2738 1.9512 30 1 4.2988 -0.0381 0.2263 31 1 7.9725 -0.0261 0.4834 32 1 2.5048 3.2138 4.8764 33 1 3.9066 3.6574 6.9636 34 1 6.0153 1.4668 7.2326 35 1 5.3084 2.3971 8.5750 36 1 4.2863 1.2962 7.6198 37 1 5.7399 4.9215 5.8736 38 1 6.1571 4.5138 7.5554 39 1 6.8641 3.5839 6.2128 40 1 6.4378 1.6131 4.8247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293943860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:47 Heat of formation + Delta-G solvation = 40.050335 kcal Electronic energy + Delta-G solvation = -21971.416870 eV Core-core repulsion = 18787.827992 eV Total energy + Delta-G solvation = -3183.588878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.00091 -40.32277 -36.97758 -36.81751 -34.99573 -33.74647 -31.86370 -30.44160 -29.13650 -28.16850 -27.23953 -24.91545 -23.89526 -23.32132 -21.20386 -20.79744 -19.78393 -18.43309 -18.00284 -17.41815 -17.04365 -16.45192 -16.19191 -15.80846 -15.42786 -15.24140 -14.79157 -14.64141 -14.40124 -14.20646 -14.13243 -13.75375 -13.37707 -13.11150 -13.07443 -12.95790 -12.71856 -12.50786 -12.32795 -12.20268 -12.06524 -11.92638 -11.55388 -11.03583 -10.60768 -10.42955 -10.36300 -10.07541 -9.56798 -9.19412 -7.98033 -6.03661 0.77220 1.32109 1.39492 1.41898 1.52259 1.72712 1.86309 2.46454 2.65467 2.83997 3.33999 3.66206 3.72138 3.93260 4.00161 4.03603 4.16536 4.20049 4.32229 4.52949 4.62417 4.69803 4.73629 4.80269 4.85218 4.90632 5.02464 5.06975 5.12083 5.27215 5.35842 5.49650 5.67962 5.69233 5.85483 5.95525 6.02083 6.32888 6.40066 6.67961 6.98676 7.20087 7.50131 7.61252 9.09928 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011275 B = 0.007918 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.806492 B = 3535.208896 C = 5459.625908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.182 4.182 3 C 0.140 3.860 4 N -0.589 5.589 5 C 0.253 3.747 6 C -0.495 4.495 7 H 0.029 0.971 8 C 0.030 3.970 9 N -0.918 5.918 10 Si 0.942 3.058 11 H -0.282 1.282 12 H -0.277 1.277 13 H -0.281 1.281 14 C 0.591 3.409 15 O -0.598 6.598 16 C -0.094 4.094 17 C 0.035 3.965 18 N -0.443 5.443 19 C 0.120 3.880 20 C -0.157 4.157 21 C -0.160 4.160 22 C 0.167 3.833 23 N -0.441 5.441 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.002 0.998 31 H 0.259 0.741 32 H 0.201 0.799 33 H 0.119 0.881 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 4.523 13.626 14.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.018 3.982 4 N -0.317 5.317 5 C 0.133 3.867 6 C -0.535 4.535 7 H 0.048 0.952 8 C -0.168 4.168 9 N -0.559 5.559 10 Si 0.769 3.231 11 H -0.208 1.208 12 H -0.203 1.203 13 H -0.207 1.207 14 C 0.381 3.619 15 O -0.482 6.482 16 C -0.223 4.223 17 C -0.106 4.106 18 N -0.125 5.125 19 C 0.019 3.981 20 C -0.215 4.215 21 C -0.218 4.218 22 C -0.117 4.117 23 N -0.158 5.158 24 H 0.119 0.881 25 H 0.137 0.863 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.020 0.980 31 H 0.069 0.931 32 H 0.218 0.782 33 H 0.137 0.863 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.870 4.195 13.141 14.327 hybrid contribution 0.680 0.883 -0.132 1.122 sum -3.190 5.079 13.008 14.325 Atomic orbital electron populations 1.23964 0.94896 1.02819 0.98397 1.23226 0.96898 0.98086 1.01861 1.20528 0.92067 0.96309 0.89306 1.48132 1.17007 1.54946 1.11607 1.19401 0.76774 0.92488 0.98083 1.21235 0.93410 0.93628 1.45189 0.95248 1.25309 0.99129 0.96658 0.95732 1.70035 1.16577 1.18033 1.51233 0.85770 0.79636 0.79770 0.77881 1.20763 1.20321 1.20691 1.17374 0.85561 0.76862 0.82132 1.90609 1.20825 1.54047 1.82769 1.20540 0.94501 1.10299 0.96991 1.22631 0.92614 1.03268 0.92124 1.45942 1.10477 1.40150 1.15921 1.21890 1.01854 0.96121 0.78230 1.22156 1.02355 0.97237 0.99734 1.22178 0.96798 0.98373 1.04412 1.25564 0.98822 0.98989 0.88316 1.71234 1.05359 1.20777 1.18384 0.88112 0.86267 0.87971 0.90507 0.90377 0.92005 0.98015 0.93148 0.78200 0.86283 0.91936 0.87722 0.92662 0.93136 0.87593 0.92085 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 14.32 67.78 0.97 -3.92 16 2 C -0.18 -6.60 9.84 25.64 0.25 -6.34 16 3 C 0.14 5.87 5.84 85.63 0.50 6.37 16 4 N -0.59 -28.71 2.46 -834.50 -2.05 -30.76 16 5 C 0.25 13.72 4.77 85.63 0.41 14.13 16 6 C -0.50 -28.31 7.99 25.60 0.20 -28.11 16 7 H 0.03 1.76 7.81 -2.91 -0.02 1.74 16 8 C 0.03 1.71 5.46 84.65 0.46 2.17 16 9 N -0.92 -53.58 13.29 21.44 0.28 -53.29 16 10 Si 0.94 44.95 29.54 68.60 2.03 46.98 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 14 C 0.59 28.56 7.61 86.63 0.66 29.21 16 15 O -0.60 -29.21 16.44 -4.09 -0.07 -29.27 16 16 C -0.09 -4.16 6.57 40.50 0.27 -3.90 16 17 C 0.03 1.17 11.22 83.72 0.94 2.11 16 18 N -0.44 -12.27 2.59 -505.87 -1.31 -13.58 16 19 C 0.12 1.98 3.57 44.99 0.16 2.14 16 20 C -0.16 -2.09 9.24 71.98 0.67 -1.43 16 21 C -0.16 -2.35 9.24 71.98 0.67 -1.68 16 22 C 0.17 5.80 11.53 180.10 2.08 7.88 16 23 N -0.44 -20.07 6.90 -188.81 -1.30 -21.38 16 24 H 0.10 2.91 7.84 -2.91 -0.02 2.89 16 25 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 26 H 0.10 3.78 8.06 -2.91 -0.02 3.75 16 27 H 0.08 3.14 7.00 -2.39 -0.02 3.13 16 28 H 0.08 3.24 8.11 -2.39 -0.02 3.22 16 29 H 0.06 3.58 5.60 -2.39 -0.01 3.56 16 30 H 0.00 0.11 8.03 -2.39 -0.02 0.09 16 31 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.20 5.59 8.06 -2.91 -0.02 5.57 16 33 H 0.12 1.50 8.07 -2.39 -0.02 1.48 16 34 H 0.06 0.92 7.94 -2.39 -0.02 0.90 16 35 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 1.00 7.94 -2.39 -0.02 0.98 16 40 H 0.22 6.29 8.06 -2.91 -0.02 6.27 16 Total: -1.00 -73.35 341.18 6.82 -66.53 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.01 Total: 16.14 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 8.23 Total: 18.63 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -4.38 Total: -119.01 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.07 Total: -29.27 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -73.35 6.82 -66.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293943860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.585 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds